Wall clock time and date at job start Sat Apr 11 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46815 * 2 1 4 4 C 1.53007 * 109.46978 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47102 * 179.97438 * 4 3 2 6 6 O 1.21288 * 120.00116 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00154 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00133 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47400 * 325.00435 * 8 7 5 10 10 C 1.52998 * 109.46944 * 84.99964 * 8 7 5 11 11 C 1.52994 * 109.47256 * 204.99765 * 8 7 5 12 12 H 1.09004 * 109.53933 * 299.90464 * 11 8 7 13 13 C 1.53124 * 109.50053 * 60.00368 * 11 8 7 14 14 C 1.53126 * 109.15878 * 177.59573 * 13 11 8 15 15 C 1.53029 * 109.27795 * 302.34185 * 14 13 11 16 16 N 1.46854 * 109.52283 * 59.18140 * 15 14 13 17 17 C 1.46901 * 111.00034 * 174.15832 * 16 15 14 18 18 C 1.50708 * 109.46869 * 66.04579 * 17 16 15 19 19 O 1.21286 * 120.00084 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99636 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00031 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99687 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00239 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00225 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 120.00074 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47068 * 59.99946 * 25 23 21 27 27 H 1.48502 * 109.47093 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47004 * 300.00266 * 25 23 21 29 29 C 1.46843 * 111.19690 * 298.25524 * 16 15 14 30 30 H 1.09000 * 109.46999 * 60.00104 * 1 2 3 31 31 H 1.08999 * 109.47046 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47165 * 299.99777 * 1 2 3 33 33 H 1.09001 * 109.47557 * 240.00367 * 2 1 3 34 34 H 1.08999 * 109.47517 * 119.99984 * 2 1 3 35 35 H 1.09002 * 109.47199 * 60.00508 * 3 2 1 36 36 H 1.09000 * 109.47253 * 299.99741 * 3 2 1 37 37 H 1.08995 * 109.46943 * 60.00259 * 4 3 2 38 38 H 1.09000 * 109.47058 * 300.00033 * 4 3 2 39 39 H 0.97000 * 119.99585 * 359.97438 * 7 5 4 40 40 H 1.08999 * 109.47434 * 179.97438 * 10 8 7 41 41 H 1.08997 * 109.47542 * 299.99902 * 10 8 7 42 42 H 1.09003 * 109.47371 * 59.99738 * 10 8 7 43 43 H 1.08998 * 109.52745 * 57.68901 * 13 11 8 44 44 H 1.08999 * 109.52030 * 297.49357 * 13 11 8 45 45 H 1.08994 * 109.50285 * 62.28827 * 14 13 11 46 46 H 1.09001 * 109.50117 * 182.40406 * 14 13 11 47 47 H 1.08999 * 109.46487 * 179.19278 * 15 14 13 48 48 H 1.09001 * 109.46656 * 299.16371 * 15 14 13 49 49 H 1.08994 * 109.46985 * 186.04737 * 17 16 15 50 50 H 1.08998 * 109.47403 * 306.04857 * 17 16 15 51 51 H 0.97003 * 120.00617 * 359.97438 * 20 18 17 52 52 H 0.96997 * 120.00664 * 180.02562 * 24 23 21 53 53 H 1.09001 * 109.45906 * 181.75382 * 29 16 15 54 54 H 1.08994 * 109.46526 * 301.73687 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8634 0.0000 6 8 3.2841 3.7853 -0.0004 7 7 5.3973 3.1098 -0.0001 8 6 5.8856 4.4910 -0.0013 9 1 5.2130 5.1137 -0.5913 10 6 5.9369 5.0150 1.4353 11 6 7.2882 4.5356 -0.6108 12 1 7.9621 3.9146 -0.0205 13 6 7.2376 4.0114 -2.0486 14 6 8.6329 4.1155 -2.6708 15 6 9.1027 5.5709 -2.6171 16 7 9.1346 6.0251 -1.2210 17 6 9.7122 7.3719 -1.1186 18 6 8.8010 8.3622 -1.7972 19 8 7.7716 7.9833 -2.3146 20 7 9.1302 9.6687 -1.8289 21 6 8.3010 10.5697 -2.4457 22 1 7.3843 10.2323 -2.9064 23 6 8.6400 11.9168 -2.4780 24 7 9.7556 12.3272 -1.9179 25 14 7.5106 13.1443 -3.3191 26 1 6.1801 13.1249 -2.6599 27 1 8.0948 14.5056 -3.2161 28 1 7.3594 12.7779 -4.7501 29 6 7.7970 5.9789 -0.6169 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.9336 0.9287 -0.8891 38 1 3.9329 0.9289 0.8909 39 1 6.0276 2.3725 0.0006 40 1 6.3006 6.0425 1.4345 41 1 4.9377 4.9833 1.8695 42 1 6.6094 4.3923 2.0254 43 1 6.5343 4.6081 -2.6294 44 1 6.9171 2.9696 -2.0453 45 1 9.3278 3.4879 -2.1129 46 1 8.5943 3.7835 -3.7083 47 1 10.1018 5.6461 -3.0464 48 1 8.4149 6.1958 -3.1868 49 1 9.8232 7.6408 -0.0682 50 1 10.6889 7.3862 -1.6025 51 1 9.9533 9.9718 -1.4148 52 1 9.9922 13.2676 -1.9401 53 1 7.8478 6.3504 0.4066 54 1 7.1153 6.6017 -1.1959 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480374746.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:21 Heat of formation + Delta-G solvation = -123.283750 kcal Electronic energy + Delta-G solvation = -30370.246123 eV Core-core repulsion = 26339.656542 eV Total energy + Delta-G solvation = -4030.589581 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.35600 -40.69396 -39.13945 -36.96421 -36.14297 -35.84700 -33.99034 -33.28766 -33.01440 -31.22052 -29.71976 -28.90876 -26.55194 -25.99122 -24.67371 -23.84620 -22.26311 -21.73559 -21.40306 -21.07547 -20.60965 -19.82402 -18.00581 -17.80837 -17.29099 -16.86926 -16.78009 -16.37897 -16.04858 -15.76618 -15.70343 -15.53966 -15.15649 -15.04203 -14.77459 -14.62465 -14.51311 -14.12443 -13.84991 -13.68435 -13.54139 -13.39130 -13.25942 -13.21395 -13.01575 -12.55883 -12.51809 -12.48417 -12.42114 -12.17938 -12.16782 -12.06431 -11.88319 -11.84882 -11.56434 -11.44216 -11.37480 -11.29569 -11.19737 -10.94261 -10.76733 -10.05559 -10.01096 -8.99409 -8.48665 -5.98667 1.34081 1.36769 1.47232 1.71060 1.99939 2.21089 2.25846 3.02643 3.16831 3.25728 3.63228 3.84183 3.84827 3.94683 3.98871 4.07713 4.22502 4.28948 4.34586 4.39097 4.40071 4.44377 4.49666 4.54665 4.62249 4.66235 4.66865 4.71880 4.77986 4.81486 4.93405 4.95504 4.98353 4.99654 5.05170 5.08009 5.12041 5.14966 5.23702 5.27209 5.29085 5.32601 5.37182 5.39962 5.49145 5.53474 5.62546 5.89967 6.07642 6.14731 6.56654 6.64675 7.09288 7.36071 7.52962 8.08753 8.66127 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014390 B = 0.002194 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.374581 B =12759.037396 C =13857.331060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C -0.106 4.106 4 C -0.130 4.130 5 C 0.503 3.497 6 O -0.596 6.596 7 N -0.708 5.708 8 C 0.154 3.846 9 H 0.043 0.957 10 C -0.156 4.156 11 C -0.070 4.070 12 H 0.105 0.895 13 C -0.108 4.108 14 C -0.102 4.102 15 C 0.037 3.963 16 N -0.496 5.496 17 C 0.048 3.952 18 C 0.406 3.594 19 O -0.621 6.621 20 N -0.570 5.570 21 C -0.334 4.334 22 H 0.074 0.926 23 C -0.010 4.010 24 N -0.916 5.916 25 Si 0.988 3.012 26 H -0.275 1.275 27 H -0.268 1.268 28 H -0.273 1.273 29 C 0.041 3.959 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.418 0.582 40 H 0.058 0.942 41 H 0.041 0.959 42 H 0.082 0.918 43 H 0.026 0.974 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.021 0.979 49 H 0.110 0.890 50 H 0.111 0.889 51 H 0.396 0.604 52 H 0.278 0.722 53 H 0.070 0.930 54 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.988 -26.681 6.188 27.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.144 4.144 4 C -0.170 4.170 5 C 0.291 3.709 6 O -0.477 6.477 7 N -0.360 5.360 8 C 0.048 3.952 9 H 0.062 0.938 10 C -0.215 4.215 11 C -0.089 4.089 12 H 0.124 0.876 13 C -0.146 4.146 14 C -0.140 4.140 15 C -0.091 4.091 16 N -0.217 5.217 17 C -0.084 4.084 18 C 0.193 3.807 19 O -0.509 6.509 20 N -0.206 5.206 21 C -0.464 4.464 22 H 0.092 0.908 23 C -0.211 4.211 24 N -0.557 5.557 25 Si 0.812 3.188 26 H -0.200 1.200 27 H -0.192 1.192 28 H -0.198 1.198 29 C -0.088 4.088 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.255 0.745 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.101 0.899 43 H 0.045 0.955 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.040 0.960 49 H 0.128 0.872 50 H 0.129 0.871 51 H 0.230 0.770 52 H 0.088 0.912 53 H 0.088 0.912 54 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.801 -26.416 6.126 27.539 hybrid contribution -0.542 2.099 -0.818 2.317 sum -5.343 -24.317 5.307 25.457 Atomic orbital electron populations 1.21798 0.96152 1.02057 1.01434 1.21513 0.95802 0.95065 1.03167 1.21352 0.93797 0.97625 1.01649 1.21740 0.97105 0.91259 1.06853 1.21560 0.82085 0.92885 0.74353 1.90713 1.56683 1.48619 1.51646 1.45938 1.07097 1.08372 1.74627 1.20675 0.94697 0.83369 0.96492 0.93816 1.22130 1.01656 1.01695 0.95972 1.21274 0.94347 0.96296 0.97011 0.87649 1.21565 0.96961 1.01278 0.94808 1.21501 0.96525 0.94601 1.01359 1.22282 1.00698 0.97094 0.89066 1.62543 1.21991 1.19880 1.17333 1.22164 0.97494 0.86568 1.02137 1.22243 0.89153 0.84067 0.85234 1.90422 1.29353 1.78794 1.52360 1.42123 1.22320 1.06275 1.49927 1.19568 1.04369 0.88733 1.33749 0.90765 1.25986 0.98296 0.98961 0.97828 1.69650 1.23772 1.17777 1.44483 0.85062 0.77984 0.77228 0.78507 1.20034 1.19204 1.19848 1.22356 0.90425 0.96873 0.99100 0.93471 0.91569 0.93260 0.90796 0.90549 0.93206 0.93558 0.86365 0.86003 0.74472 0.92328 0.93933 0.89887 0.95493 0.89317 0.89287 0.90848 0.90860 0.96049 0.87223 0.87149 0.76986 0.91241 0.91173 0.94275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.24 5.93 30.59 0.18 -1.06 16 3 C -0.11 -1.70 4.50 30.60 0.14 -1.57 16 4 C -0.13 -1.60 5.70 29.85 0.17 -1.43 16 5 C 0.50 11.09 7.79 87.66 0.68 11.78 16 6 O -0.60 -20.12 15.65 -3.05 -0.05 -20.17 16 7 N -0.71 -12.81 4.43 -442.54 -1.96 -14.77 16 8 C 0.15 3.84 2.16 44.99 0.10 3.93 16 9 H 0.04 1.51 7.58 -2.39 -0.02 1.49 16 10 C -0.16 -3.75 9.14 71.98 0.66 -3.09 16 11 C -0.07 -1.65 1.99 -10.74 -0.02 -1.67 16 12 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 13 C -0.11 -2.52 5.09 30.68 0.16 -2.37 16 14 C -0.10 -2.32 6.09 30.65 0.19 -2.13 16 15 C 0.04 1.14 5.09 86.32 0.44 1.58 16 16 N -0.50 -15.37 4.86 -900.93 -4.38 -19.75 16 17 C 0.05 1.64 5.86 85.56 0.50 2.14 16 18 C 0.41 18.96 7.20 87.66 0.63 19.60 16 19 O -0.62 -33.32 11.20 -3.05 -0.03 -33.35 16 20 N -0.57 -29.25 5.29 -306.99 -1.62 -30.87 16 21 C -0.33 -19.19 9.68 84.04 0.81 -18.37 16 22 H 0.07 4.58 7.16 -2.91 -0.02 4.56 16 23 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 24 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 25 Si 0.99 43.83 29.55 68.60 2.03 45.86 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 29 C 0.04 1.31 3.88 86.33 0.34 1.65 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.08 0.60 8.14 -2.39 -0.02 0.59 16 35 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 36 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 37 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.42 4.21 8.40 -92.71 -0.78 3.43 16 40 H 0.06 1.55 6.45 -2.39 -0.02 1.53 16 41 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.09 1.49 7.53 -2.39 -0.02 1.47 16 45 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.07 2.10 8.06 -2.39 -0.02 2.08 16 48 H 0.02 0.87 6.00 -2.39 -0.01 0.85 16 49 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 50 H 0.11 3.30 8.06 -2.39 -0.02 3.28 16 51 H 0.40 19.34 7.90 -92.71 -0.73 18.61 16 52 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 53 H 0.07 2.17 6.46 -2.39 -0.02 2.15 16 54 H 0.04 1.68 5.36 -2.39 -0.01 1.67 16 Total: -1.00 -74.91 418.32 -0.20 -75.12 By element: Atomic # 1 Polarization: 40.24 SS G_CDS: -0.62 Total: 39.62 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 6.15 Total: 7.75 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -7.68 Total: -114.82 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -0.08 Total: -53.52 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -74.91 -0.20 -75.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480374746.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.166 kcal (2) G-P(sol) polarization free energy of solvation -74.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds