Wall clock time and date at job start Sat Apr 11 2020 05:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47303 * 2 1 4 4 C 1.52999 * 109.47303 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47004 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00472 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99538 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72653 * 7 5 4 9 9 H 1.08999 * 109.47480 * 35.27807 * 8 7 5 10 10 C 1.53008 * 109.47014 * 275.27733 * 8 7 5 11 11 C 1.52999 * 109.47493 * 155.28120 * 8 7 5 12 12 H 1.09005 * 109.49756 * 304.99964 * 11 8 7 13 13 C 1.53116 * 109.50284 * 65.07288 * 11 8 7 14 14 C 1.53125 * 109.16032 * 177.60057 * 13 11 8 15 15 C 1.53038 * 109.28079 * 302.35039 * 14 13 11 16 16 N 1.46845 * 109.52142 * 59.17434 * 15 14 13 17 17 C 1.46907 * 110.99902 * 174.16632 * 16 15 14 18 18 C 1.50702 * 109.46579 * 293.95636 * 17 16 15 19 19 O 1.21288 * 120.00182 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99697 * 180.02562 * 18 17 16 21 21 C 1.37096 * 120.00207 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99921 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00581 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99192 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00264 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47242 * 90.00227 * 25 23 21 27 27 H 1.48502 * 109.46623 * 210.00126 * 25 23 21 28 28 H 1.48491 * 109.47131 * 329.99755 * 25 23 21 29 29 C 1.46846 * 111.23742 * 298.28008 * 16 15 14 30 30 H 1.09007 * 109.47302 * 60.00055 * 1 2 3 31 31 H 1.08998 * 109.47611 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47378 * 300.00237 * 1 2 3 33 33 H 1.08995 * 109.46838 * 239.99550 * 2 1 3 34 34 H 1.09001 * 109.47054 * 119.99575 * 2 1 3 35 35 H 1.09000 * 109.47250 * 59.99315 * 3 2 1 36 36 H 1.09007 * 109.46897 * 300.00194 * 3 2 1 37 37 H 1.09003 * 109.46690 * 59.99829 * 4 3 2 38 38 H 1.08993 * 109.46773 * 300.00165 * 4 3 2 39 39 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 40 40 H 1.09005 * 109.46722 * 180.02562 * 10 8 7 41 41 H 1.09000 * 109.47169 * 299.99790 * 10 8 7 42 42 H 1.08995 * 109.47066 * 60.00517 * 10 8 7 43 43 H 1.08997 * 109.52916 * 297.50550 * 13 11 8 44 44 H 1.09001 * 109.52456 * 57.63741 * 13 11 8 45 45 H 1.09005 * 109.50121 * 62.29087 * 14 13 11 46 46 H 1.09002 * 109.50348 * 182.36502 * 14 13 11 47 47 H 1.08993 * 109.46832 * 179.19542 * 15 14 13 48 48 H 1.09000 * 109.45778 * 299.16409 * 15 14 13 49 49 H 1.08993 * 109.47096 * 53.95234 * 17 16 15 50 50 H 1.09001 * 109.47206 * 173.95956 * 17 16 15 51 51 H 0.97002 * 119.99936 * 359.97438 * 20 18 17 52 52 H 0.97005 * 119.99187 * 179.97438 * 24 23 21 53 53 H 1.09007 * 109.42997 * 301.69048 * 29 16 15 54 54 H 1.08997 * 109.50159 * 181.71691 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2842 3.7852 -0.0004 7 7 5.3974 3.1095 0.0009 8 6 5.8858 4.4907 -0.0057 9 1 5.2149 5.1161 0.5832 10 6 5.9331 5.0079 -1.4450 11 6 7.2901 4.5381 0.5996 12 1 7.2738 4.0879 1.5922 13 6 8.2597 3.7634 -0.2971 14 6 9.6728 3.8662 0.2838 15 6 10.0659 5.3408 0.3985 16 7 9.1084 6.0378 1.2667 17 6 9.5314 7.4232 1.5114 18 6 10.8082 7.4245 2.3119 19 8 11.3155 6.3748 2.6461 20 7 11.3857 8.5922 2.6574 21 6 12.5470 8.5935 3.3861 22 1 12.9992 7.6588 3.6829 23 6 13.1428 9.7974 3.7418 24 7 12.5927 10.9347 3.3801 25 14 14.7254 9.7990 4.7341 26 1 15.8884 9.7820 3.8110 27 1 14.7800 11.0207 5.5766 28 1 14.7658 8.5960 5.6035 29 6 7.7519 5.9932 0.7061 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 3.9337 0.9284 -0.8891 38 1 3.9329 0.9288 0.8908 39 1 6.0278 2.3722 0.0016 40 1 6.2969 6.0354 -1.4499 41 1 6.6040 4.3825 -2.0339 42 1 4.9327 4.9742 -1.8762 43 1 7.9590 2.7166 -0.3402 44 1 8.2459 4.1880 -1.3009 45 1 9.6945 3.4059 1.2716 46 1 10.3745 3.3519 -0.3728 47 1 11.0659 5.4180 0.8251 48 1 10.0573 5.7970 -0.5914 49 1 9.6993 7.9255 0.5588 50 1 8.7539 7.9478 2.0667 51 1 10.9798 9.4318 2.3904 52 1 13.0084 11.7752 3.6287 53 1 7.7540 6.4469 -0.2850 54 1 7.0714 6.5435 1.3558 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480374749.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:26 Heat of formation + Delta-G solvation = -121.753781 kcal Electronic energy + Delta-G solvation = -29702.132650 eV Core-core repulsion = 25671.609413 eV Total energy + Delta-G solvation = -4030.523237 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.26816 -40.49970 -39.42245 -36.99437 -36.12693 -35.83672 -34.03863 -33.24625 -32.84967 -31.21477 -29.66310 -28.88924 -26.50753 -26.13420 -24.85370 -24.02672 -22.46467 -21.84737 -21.15302 -20.94883 -20.06695 -19.83829 -18.00735 -17.76565 -17.14865 -16.84033 -16.62744 -16.47030 -16.23985 -15.85200 -15.65246 -15.53373 -15.26309 -15.01911 -14.80375 -14.61172 -14.41005 -14.07879 -13.95533 -13.81365 -13.48315 -13.42324 -13.21419 -13.19170 -12.97934 -12.78412 -12.59664 -12.41468 -12.41129 -12.16449 -12.12423 -12.05325 -11.90470 -11.84573 -11.58543 -11.43049 -11.41920 -11.32657 -11.12584 -10.78874 -10.23288 -10.04025 -9.98314 -9.14421 -8.45708 -5.94255 1.38063 1.41635 1.54451 1.72088 2.06667 2.20358 2.30463 2.80282 3.21185 3.40172 3.70122 3.76589 3.86020 3.91249 3.97305 4.08947 4.19529 4.25099 4.34721 4.37225 4.39865 4.40982 4.49430 4.50042 4.50984 4.54526 4.67546 4.68725 4.71017 4.80607 4.82610 4.91380 4.96784 5.01153 5.03786 5.06340 5.10778 5.13412 5.18484 5.30200 5.32527 5.34662 5.41054 5.41688 5.50941 5.54290 5.60284 5.92211 6.12577 6.28942 6.61908 6.63527 7.14094 7.34406 7.57792 8.13696 8.71756 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.028255 B = 0.001674 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.732030 B =16718.824693 C =16832.599058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.134 4.134 5 C 0.506 3.494 6 O -0.589 6.589 7 N -0.714 5.714 8 C 0.155 3.845 9 H 0.066 0.934 10 C -0.161 4.161 11 C -0.079 4.079 12 H 0.075 0.925 13 C -0.109 4.109 14 C -0.107 4.107 15 C 0.052 3.948 16 N -0.532 5.532 17 C 0.057 3.943 18 C 0.442 3.558 19 O -0.612 6.612 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.273 1.273 29 C 0.061 3.939 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.414 0.586 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.055 0.945 46 H 0.079 0.921 47 H 0.057 0.943 48 H 0.031 0.969 49 H 0.065 0.935 50 H 0.106 0.894 51 H 0.395 0.605 52 H 0.277 0.723 53 H 0.049 0.951 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.492 -19.511 -12.039 29.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.142 4.142 4 C -0.174 4.174 5 C 0.295 3.705 6 O -0.470 6.470 7 N -0.367 5.367 8 C 0.049 3.951 9 H 0.084 0.916 10 C -0.219 4.219 11 C -0.098 4.098 12 H 0.093 0.907 13 C -0.146 4.146 14 C -0.145 4.145 15 C -0.076 4.076 16 N -0.257 5.257 17 C -0.074 4.074 18 C 0.230 3.770 19 O -0.498 6.498 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.198 1.198 29 C -0.067 4.067 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.251 0.749 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.075 0.925 48 H 0.049 0.951 49 H 0.083 0.917 50 H 0.124 0.876 51 H 0.229 0.771 52 H 0.086 0.914 53 H 0.067 0.933 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.657 -19.601 -11.330 29.337 hybrid contribution 0.979 1.256 -0.113 1.597 sum -17.677 -18.345 -11.443 27.928 Atomic orbital electron populations 1.21795 0.96050 1.01989 1.01541 1.21521 0.95885 0.95362 1.02981 1.21332 0.93590 0.97419 1.01864 1.21748 0.97286 0.91786 1.06575 1.21405 0.82069 0.92708 0.74358 1.90692 1.56481 1.48260 1.51541 1.46065 1.07078 1.08810 1.74744 1.20710 0.93964 0.83419 0.96971 0.91564 1.22232 1.01715 1.02060 0.95854 1.21278 0.92967 0.95542 1.00042 0.90666 1.21712 0.93150 1.00966 0.98811 1.21489 0.97620 0.94121 1.01252 1.22177 0.96422 0.95636 0.93348 1.61399 1.02645 1.13135 1.48497 1.21706 0.95285 0.91198 0.99204 1.20750 0.87952 0.83646 0.84700 1.90456 1.67143 1.32334 1.59870 1.41942 1.23163 1.07380 1.48806 1.19659 1.01538 0.94052 1.30911 0.90295 1.26027 1.02495 0.93988 0.98751 1.69683 1.41574 0.97955 1.47044 0.84932 0.77502 0.77876 0.78056 1.19601 1.19626 1.19803 1.22179 0.88841 0.97071 0.98575 0.93116 0.91814 0.93311 0.90783 0.91048 0.93236 0.92923 0.86362 0.86776 0.74879 0.91253 0.90554 0.93703 0.89482 0.90570 0.92648 0.90291 0.92463 0.95094 0.91721 0.87612 0.77128 0.91374 0.93334 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.91 71.98 0.71 -0.84 16 2 C -0.12 -1.07 5.93 30.59 0.18 -0.89 16 3 C -0.10 -1.38 4.50 30.59 0.14 -1.24 16 4 C -0.13 -1.34 5.70 29.85 0.17 -1.17 16 5 C 0.51 9.05 7.79 87.66 0.68 9.73 16 6 O -0.59 -16.26 15.65 -3.04 -0.05 -16.30 16 7 N -0.71 -10.14 5.01 -442.52 -2.22 -12.36 16 8 C 0.15 2.75 2.35 44.99 0.11 2.85 16 9 H 0.07 1.51 7.58 -2.39 -0.02 1.49 16 10 C -0.16 -2.64 8.75 71.98 0.63 -2.01 16 11 C -0.08 -1.49 2.28 -10.74 -0.02 -1.52 16 12 H 0.07 1.63 8.14 -2.38 -0.02 1.62 16 13 C -0.11 -1.75 4.71 30.67 0.14 -1.61 16 14 C -0.11 -2.48 6.09 30.65 0.19 -2.30 16 15 C 0.05 1.61 5.11 86.33 0.44 2.05 16 16 N -0.53 -17.00 4.39 -900.93 -3.96 -20.96 16 17 C 0.06 2.02 5.45 85.56 0.47 2.49 16 18 C 0.44 21.24 7.46 87.66 0.65 21.90 16 19 O -0.61 -33.76 13.92 -3.06 -0.04 -33.81 16 20 N -0.58 -29.85 5.29 -306.99 -1.62 -31.47 16 21 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 24 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 25 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 29 C 0.06 1.44 4.52 86.32 0.39 1.83 16 30 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16 35 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 36 H 0.05 0.86 8.10 -2.38 -0.02 0.84 16 37 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.41 3.47 7.22 -92.71 -0.67 2.80 16 40 H 0.07 1.13 6.54 -2.38 -0.02 1.11 16 41 H 0.08 1.03 6.29 -2.39 -0.02 1.01 16 42 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.09 0.93 6.85 -2.39 -0.02 0.91 16 44 H 0.08 1.12 6.21 -2.39 -0.01 1.11 16 45 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 46 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.06 2.31 5.80 -2.39 -0.01 2.30 16 48 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.06 2.06 8.12 -2.39 -0.02 2.04 16 50 H 0.11 3.36 7.98 -2.39 -0.02 3.34 16 51 H 0.40 19.55 7.90 -92.71 -0.73 18.82 16 52 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 53 H 0.05 1.03 6.52 -2.38 -0.02 1.01 16 54 H 0.08 1.76 8.01 -2.39 -0.02 1.74 16 Total: -1.00 -73.56 418.35 0.07 -73.48 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: -0.51 Total: 35.17 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 6.16 Total: 10.87 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -7.51 Total: -114.63 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -0.09 Total: -50.11 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -73.56 0.07 -73.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480374749.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.270 kcal (2) G-P(sol) polarization free energy of solvation -73.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds