Wall clock time and date at job start Sat Apr 11 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47445 * 2 1 4 4 C 1.52997 * 109.47010 * 180.02562 * 3 2 1 5 5 C 1.50705 * 109.46748 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99935 * 359.97438 * 5 4 3 7 7 N 1.34773 * 119.99875 * 180.02562 * 5 4 3 8 8 C 1.46505 * 119.99899 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.47264 * 34.99839 * 8 7 5 10 10 C 1.52997 * 109.46944 * 274.99511 * 8 7 5 11 11 C 1.52998 * 109.47034 * 154.99545 * 8 7 5 12 12 H 1.08999 * 109.50958 * 60.07626 * 11 8 7 13 13 C 1.53126 * 109.50673 * 299.99746 * 11 8 7 14 14 C 1.53109 * 109.16214 * 182.36593 * 13 11 8 15 15 C 1.53044 * 109.28150 * 57.65538 * 14 13 11 16 16 N 1.46846 * 109.51968 * 300.81833 * 15 14 13 17 17 C 1.46901 * 110.99738 * 185.83487 * 16 15 14 18 18 C 1.50701 * 109.46921 * 66.04780 * 17 16 15 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00506 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 120.00009 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47177 * 89.99959 * 25 23 21 27 27 H 1.48505 * 109.47036 * 210.00243 * 25 23 21 28 28 H 1.48499 * 109.46776 * 329.99732 * 25 23 21 29 29 C 1.46854 * 111.19765 * 61.74063 * 16 15 14 30 30 H 1.08994 * 109.46906 * 300.00129 * 1 2 3 31 31 H 1.09007 * 109.46903 * 60.00017 * 1 2 3 32 32 H 1.08994 * 109.47323 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46800 * 240.00239 * 2 1 3 34 34 H 1.08997 * 109.47220 * 120.00393 * 2 1 3 35 35 H 1.08993 * 109.46745 * 59.99715 * 3 2 1 36 36 H 1.09007 * 109.47056 * 299.99889 * 3 2 1 37 37 H 1.08996 * 109.47634 * 60.00584 * 4 3 2 38 38 H 1.08999 * 109.47356 * 299.99349 * 4 3 2 39 39 H 0.96998 * 120.00087 * 359.97438 * 7 5 4 40 40 H 1.09001 * 109.47221 * 60.00061 * 10 8 7 41 41 H 1.09002 * 109.46974 * 180.02562 * 10 8 7 42 42 H 1.09007 * 109.46954 * 299.99732 * 10 8 7 43 43 H 1.08999 * 109.51776 * 62.45488 * 13 11 8 44 44 H 1.09003 * 109.56860 * 302.30298 * 13 11 8 45 45 H 1.09001 * 109.50885 * 297.71081 * 14 13 11 46 46 H 1.09008 * 109.53797 * 177.61369 * 14 13 11 47 47 H 1.08999 * 109.46106 * 180.80329 * 15 14 13 48 48 H 1.09001 * 109.45129 * 60.82697 * 15 14 13 49 49 H 1.09002 * 109.47401 * 306.04808 * 17 16 15 50 50 H 1.09001 * 109.46874 * 186.04821 * 17 16 15 51 51 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 52 52 H 0.96993 * 120.00255 * 180.02562 * 24 23 21 53 53 H 1.09005 * 109.46009 * 58.26928 * 29 16 15 54 54 H 1.08998 * 109.46194 * 178.23807 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0724 2.8632 0.0000 6 8 3.2843 3.7851 0.0004 7 7 5.3975 3.1095 -0.0009 8 6 5.8858 4.4907 0.0002 9 1 5.2139 5.1132 0.5910 10 6 5.9361 5.0151 -1.4362 11 6 7.2889 4.5350 0.6087 12 1 7.9618 3.9138 0.0177 13 6 7.2395 4.0104 2.0465 14 6 8.6354 4.1133 2.6672 15 6 9.1063 5.5685 2.6135 16 7 9.1371 6.0230 1.2175 17 6 9.7155 7.3695 1.1150 18 6 11.1694 7.3230 1.5092 19 8 11.6741 6.2715 1.8422 20 7 11.9090 8.4496 1.4906 21 6 13.2317 8.4072 1.8487 22 1 13.6808 7.4711 2.1461 23 6 13.9940 9.5686 1.8301 24 7 15.2620 9.5280 2.1729 25 14 13.2169 11.1878 1.3165 26 1 12.6582 11.8697 2.5114 27 1 14.2468 12.0540 0.6885 28 1 12.1280 10.9268 0.3411 29 6 7.7988 5.9779 0.6147 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8899 36 1 1.6768 1.9564 -0.8901 37 1 3.9331 0.9288 -0.8908 38 1 3.9338 0.9285 0.8891 39 1 6.0278 2.3722 -0.0016 40 1 4.9365 4.9835 -1.8697 41 1 6.2999 6.0426 -1.4354 42 1 6.6082 4.3925 -2.0269 43 1 6.9181 2.9689 2.0432 44 1 6.5370 4.6066 2.6287 45 1 9.3294 3.4854 2.1085 46 1 8.5983 3.7809 3.7047 47 1 10.1058 5.6428 3.0419 48 1 8.4192 6.1936 3.1839 49 1 9.1801 8.0466 1.7806 50 1 9.6286 7.7250 0.0883 51 1 11.5054 9.2903 1.2239 52 1 15.7941 10.3389 2.1602 53 1 7.1181 6.6012 1.1946 54 1 7.8488 6.3497 -0.4087 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480374754.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:35 Heat of formation + Delta-G solvation = -119.009443 kcal Electronic energy + Delta-G solvation = -29761.781364 eV Core-core repulsion = 25731.377131 eV Total energy + Delta-G solvation = -4030.404233 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.22294 -40.56887 -39.43200 -36.98045 -36.12051 -35.87402 -34.10509 -33.68147 -33.01275 -31.21678 -29.69346 -29.14883 -26.41224 -25.94170 -24.69688 -23.77534 -22.29502 -21.72074 -21.35789 -21.20748 -20.55802 -20.14855 -17.95929 -17.79814 -17.17263 -16.84031 -16.82472 -16.54813 -16.30018 -15.68992 -15.51375 -15.26546 -15.09879 -14.89995 -14.78024 -14.62267 -14.53356 -14.35143 -14.10069 -13.86984 -13.76679 -13.47900 -13.38785 -13.20443 -13.05484 -12.65245 -12.57058 -12.48568 -12.40591 -12.16798 -12.05486 -11.98195 -11.89069 -11.83933 -11.59933 -11.53376 -11.43123 -11.31726 -11.22962 -10.76264 -10.31311 -10.20602 -10.01690 -9.18274 -8.40237 -6.00597 1.30543 1.35447 1.44366 1.73210 1.97749 2.21823 2.23576 2.66236 3.16170 3.22451 3.63089 3.83106 3.86004 3.89996 3.97695 4.08917 4.13732 4.20680 4.35896 4.36347 4.37656 4.40924 4.44642 4.48176 4.50617 4.54182 4.66127 4.68113 4.74413 4.80323 4.84551 4.89266 4.96824 4.97107 5.02706 5.04677 5.08567 5.13464 5.20045 5.30039 5.31352 5.32312 5.40973 5.47559 5.51850 5.54875 5.61814 5.92464 6.06623 6.25580 6.61588 6.64686 6.90197 7.35303 7.41793 7.99248 8.77433 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.033291 B = 0.001744 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.859854 B =16047.660335 C =16543.536277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.103 4.103 4 C -0.135 4.135 5 C 0.508 3.492 6 O -0.589 6.589 7 N -0.714 5.714 8 C 0.156 3.844 9 H 0.068 0.932 10 C -0.161 4.161 11 C -0.080 4.080 12 H 0.087 0.913 13 C -0.104 4.104 14 C -0.107 4.107 15 C 0.050 3.950 16 N -0.531 5.531 17 C 0.053 3.947 18 C 0.452 3.548 19 O -0.603 6.603 20 N -0.594 5.594 21 C -0.326 4.326 22 H 0.056 0.944 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.963 3.037 26 H -0.259 1.259 27 H -0.275 1.275 28 H -0.231 1.231 29 C 0.062 3.938 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.414 0.586 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.030 0.970 49 H 0.073 0.927 50 H 0.121 0.879 51 H 0.388 0.612 52 H 0.278 0.722 53 H 0.039 0.961 54 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.624 -14.471 -6.649 32.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.158 4.158 3 C -0.141 4.141 4 C -0.175 4.175 5 C 0.296 3.704 6 O -0.469 6.469 7 N -0.366 5.366 8 C 0.051 3.949 9 H 0.087 0.913 10 C -0.219 4.219 11 C -0.099 4.099 12 H 0.105 0.895 13 C -0.142 4.142 14 C -0.145 4.145 15 C -0.077 4.077 16 N -0.256 5.256 17 C -0.078 4.078 18 C 0.240 3.760 19 O -0.487 6.487 20 N -0.236 5.236 21 C -0.455 4.455 22 H 0.074 0.926 23 C -0.212 4.212 24 N -0.576 5.576 25 Si 0.783 3.217 26 H -0.183 1.183 27 H -0.201 1.201 28 H -0.154 1.154 29 C -0.066 4.066 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.251 0.749 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.075 0.925 48 H 0.048 0.952 49 H 0.091 0.909 50 H 0.138 0.862 51 H 0.224 0.776 52 H 0.088 0.912 53 H 0.057 0.943 54 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -28.341 -14.755 -6.653 32.637 hybrid contribution 0.344 1.477 0.495 1.595 sum -27.997 -13.278 -6.158 31.592 Atomic orbital electron populations 1.21792 0.96045 1.01973 1.01556 1.21526 0.95891 0.95440 1.02943 1.21324 0.93596 0.97345 1.01874 1.21748 0.97268 0.91929 1.06516 1.21343 0.82038 0.92607 0.74369 1.90689 1.56455 1.48218 1.51585 1.46036 1.07075 1.08832 1.74647 1.20745 0.94047 0.83403 0.96746 0.91334 1.22185 1.01618 1.02276 0.95817 1.21326 0.94819 0.96751 0.96998 0.89471 1.21565 0.95786 1.01998 0.94855 1.21482 0.97036 0.94858 1.01132 1.22176 1.00436 0.96953 0.88170 1.61429 1.22447 1.23079 1.18641 1.21816 0.90504 0.91455 1.04014 1.20868 0.89662 0.83427 0.82029 1.90515 1.74383 1.31384 1.52382 1.42051 1.09587 1.09635 1.62287 1.18997 0.85772 0.96773 1.43984 0.92600 1.26068 0.95690 1.02671 0.96800 1.69800 1.08358 1.30859 1.48598 0.85397 0.79349 0.77092 0.79892 1.18334 1.20055 1.15446 1.22220 0.87413 0.96610 1.00365 0.93217 0.93159 0.91868 0.90934 0.91004 0.93084 0.93014 0.86626 0.86691 0.74911 0.93648 0.90667 0.91395 0.89961 0.92526 0.92201 0.90942 0.92501 0.95211 0.90877 0.86151 0.77612 0.91212 0.94276 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.91 71.98 0.71 -0.75 16 2 C -0.12 -1.00 5.93 30.60 0.18 -0.82 16 3 C -0.10 -1.28 4.50 30.59 0.14 -1.14 16 4 C -0.14 -1.24 5.70 29.85 0.17 -1.07 16 5 C 0.51 8.40 7.79 87.66 0.68 9.08 16 6 O -0.59 -15.34 15.65 -3.03 -0.05 -15.39 16 7 N -0.71 -9.23 4.43 -442.53 -1.96 -11.18 16 8 C 0.16 2.51 2.16 44.99 0.10 2.61 16 9 H 0.07 1.41 7.58 -2.39 -0.02 1.39 16 10 C -0.16 -2.52 9.14 71.98 0.66 -1.86 16 11 C -0.08 -1.37 1.98 -10.74 -0.02 -1.39 16 12 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 13 C -0.10 -1.84 5.09 30.67 0.16 -1.69 16 14 C -0.11 -2.56 6.09 30.65 0.19 -2.38 16 15 C 0.05 1.54 5.11 86.33 0.44 1.98 16 16 N -0.53 -15.59 4.39 -900.89 -3.96 -19.55 16 17 C 0.05 1.64 5.45 85.56 0.47 2.11 16 18 C 0.45 20.37 7.46 87.66 0.65 21.02 16 19 O -0.60 -32.98 13.92 -3.07 -0.04 -33.02 16 20 N -0.59 -28.00 5.09 -306.98 -1.56 -29.56 16 21 C -0.33 -19.10 10.16 84.04 0.85 -18.24 16 22 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 23 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 24 N -0.94 -56.49 13.96 21.66 0.30 -56.19 16 25 Si 0.96 38.87 27.74 68.60 1.90 40.78 16 26 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 27 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 28 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 29 C 0.06 1.28 4.37 86.32 0.38 1.65 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 36 H 0.05 0.81 8.10 -2.38 -0.02 0.79 16 37 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.41 3.14 8.40 -92.71 -0.78 2.36 16 40 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 1.09 6.46 -2.39 -0.02 1.07 16 42 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.08 1.12 7.53 -2.39 -0.02 1.10 16 44 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 47 H 0.06 2.28 5.80 -2.39 -0.01 2.26 16 48 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.07 1.94 8.12 -2.39 -0.02 1.92 16 50 H 0.12 3.02 7.98 -2.39 -0.02 3.00 16 51 H 0.39 15.21 5.76 -92.71 -0.53 14.67 16 52 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 53 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 54 H 0.09 1.67 6.35 -2.39 -0.02 1.66 16 Total: -1.00 -80.47 420.26 0.37 -80.10 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: -0.49 Total: 35.19 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 6.22 Total: 8.82 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -7.18 Total: -116.48 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.09 Total: -48.41 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 1.90 Total: 40.78 kcal Total: -80.47 0.37 -80.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480374754.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.910 kcal (2) G-P(sol) polarization free energy of solvation -80.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds