Wall clock time and date at job start Sat Apr 11 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.46883 * 2 1 4 4 C 1.53005 * 109.47046 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47274 * 55.00168 * 4 3 2 6 6 C 1.53003 * 109.46747 * 294.99766 * 4 3 2 7 7 C 1.50697 * 109.46811 * 175.00129 * 4 3 2 8 8 O 1.21278 * 120.00602 * 16.46427 * 7 4 3 9 9 N 1.34777 * 119.99776 * 196.46463 * 7 4 3 10 10 C 1.46928 * 120.63149 * 5.51353 * 9 7 4 11 11 C 1.53199 * 108.77181 * 126.36743 * 10 9 7 12 12 C 1.53045 * 109.31176 * 54.64259 * 11 10 9 13 13 C 1.53043 * 109.53399 * 298.63194 * 12 11 10 14 14 H 1.09003 * 109.49630 * 301.41280 * 13 12 11 15 15 C 1.50696 * 109.49664 * 181.34936 * 13 12 11 16 16 O 1.21283 * 120.00231 * 239.99864 * 15 13 12 17 17 N 1.34780 * 120.00052 * 59.99702 * 15 13 12 18 18 C 1.46498 * 119.99974 * 179.97438 * 17 15 13 19 19 C 1.53009 * 109.46960 * 180.02562 * 18 17 15 20 20 N 1.46499 * 109.47014 * 180.02562 * 19 18 17 21 21 C 1.36935 * 119.99709 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00565 * 359.97438 * 21 20 19 23 23 C 1.38813 * 119.99570 * 180.02562 * 21 20 19 24 24 N 1.31615 * 120.00484 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99664 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47296 * 89.99796 * 25 23 21 27 27 H 1.48498 * 109.47183 * 209.99777 * 25 23 21 28 28 H 1.48503 * 109.47488 * 329.99477 * 25 23 21 29 29 C 1.46929 * 120.63115 * 185.23785 * 9 7 4 30 30 H 1.09002 * 109.47443 * 60.00247 * 1 2 3 31 31 H 1.09000 * 109.47044 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47601 * 299.99844 * 1 2 3 33 33 H 1.08997 * 109.47601 * 240.00156 * 2 1 3 34 34 H 1.09002 * 109.47443 * 119.99753 * 2 1 3 35 35 H 1.09003 * 109.47003 * 60.00416 * 3 2 1 36 36 H 1.08996 * 109.46973 * 299.99667 * 3 2 1 37 37 H 1.08993 * 109.47400 * 301.03946 * 6 4 3 38 38 H 1.08998 * 109.47315 * 61.04331 * 6 4 3 39 39 H 1.09008 * 109.46915 * 181.04130 * 6 4 3 40 40 H 1.08992 * 109.59241 * 246.15701 * 10 9 7 41 41 H 1.08998 * 109.58347 * 6.59155 * 10 9 7 42 42 H 1.08997 * 109.49467 * 174.58901 * 11 10 9 43 43 H 1.08997 * 109.50258 * 294.68605 * 11 10 9 44 44 H 1.08996 * 109.46195 * 58.64929 * 12 11 10 45 45 H 1.08993 * 109.45689 * 178.61549 * 12 11 10 46 46 H 0.97002 * 119.99555 * 0.02562 * 17 15 13 47 47 H 1.09000 * 109.47483 * 299.99947 * 18 17 15 48 48 H 1.08997 * 109.47043 * 60.00836 * 18 17 15 49 49 H 1.09000 * 109.46828 * 300.00163 * 19 18 17 50 50 H 1.09003 * 109.46976 * 60.00123 * 19 18 17 51 51 H 0.97002 * 119.99749 * 359.97438 * 20 19 18 52 52 H 0.96996 * 120.00004 * 179.97438 * 24 23 21 53 53 H 1.08999 * 109.58618 * 353.41886 * 29 9 7 54 54 H 1.08999 * 109.58377 * 113.84276 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 6 4.0804 0.8328 1.3065 7 6 4.0721 2.8581 -0.1244 8 8 3.3247 3.7880 0.0935 9 7 5.3519 3.0906 -0.4774 10 6 6.2359 1.9815 -0.8613 11 6 6.8457 2.2892 -2.2326 12 6 7.5350 3.6548 -2.1850 13 6 6.5033 4.7379 -1.8612 14 1 5.7188 4.7308 -2.6180 15 6 7.1767 6.0859 -1.8473 16 8 7.1653 6.7591 -0.8385 17 7 7.7916 6.5436 -2.9559 18 6 8.4458 7.8543 -2.9425 19 6 9.0611 8.1313 -4.3157 20 7 9.7158 9.4418 -4.3022 21 6 10.3397 9.9071 -5.4288 22 1 10.3496 9.3079 -6.3272 23 6 10.9605 11.1486 -5.4157 24 7 10.9489 11.8788 -4.3207 25 14 11.8123 11.7831 -6.9524 26 1 10.8435 12.5528 -7.7734 27 1 12.9422 12.6648 -6.5638 28 1 12.3286 10.6360 -7.7417 29 6 5.8879 4.4585 -0.4913 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8901 36 1 1.6766 1.9563 -0.8900 37 1 3.7023 1.4113 2.1493 38 1 3.7325 -0.1970 1.3873 39 1 5.1703 0.8498 1.3140 40 1 7.0309 1.8756 -0.1233 41 1 5.6601 1.0577 -0.9166 42 1 7.5767 1.5215 -2.4861 43 1 6.0581 2.3053 -2.9858 44 1 8.3060 3.6459 -1.4146 45 1 7.9910 3.8653 -3.1524 46 1 7.8004 6.0053 -3.7628 47 1 7.7103 8.6251 -2.7122 48 1 9.2293 7.8616 -2.1848 49 1 9.7965 7.3605 -4.5465 50 1 8.2773 8.1241 -5.0732 51 1 9.7065 9.9802 -3.4953 52 1 11.3830 12.7461 -4.3116 53 1 5.0826 5.1684 -0.3024 54 1 6.6539 4.5586 0.2776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480607489.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:39 Heat of formation + Delta-G solvation = -113.329746 kcal Electronic energy + Delta-G solvation = -29560.938822 eV Core-core repulsion = 25530.780879 eV Total energy + Delta-G solvation = -4030.157943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.78029 -40.76621 -38.39577 -37.31963 -36.92061 -35.56954 -34.35079 -33.12971 -32.78470 -32.07168 -29.48669 -27.55554 -26.86502 -26.05081 -25.02605 -24.05493 -23.08092 -22.53553 -21.69455 -20.89028 -19.79403 -19.33944 -18.47379 -17.90435 -17.14726 -16.85622 -16.79921 -16.54615 -16.38125 -15.92427 -15.69489 -15.35288 -15.32669 -15.05942 -14.89720 -14.82978 -14.58520 -14.27896 -14.20309 -13.80609 -13.66375 -13.39846 -13.13261 -13.09777 -13.05086 -12.76818 -12.68206 -12.58197 -12.51360 -12.26497 -12.09505 -12.06927 -11.92782 -11.86567 -11.82884 -11.65996 -11.64873 -11.38307 -11.00084 -10.94121 -10.63820 -10.19552 -9.72103 -9.07781 -7.97602 -5.29288 1.48051 1.50580 1.52541 1.56932 1.59002 1.75557 2.20993 2.57734 3.36835 3.39216 3.53200 3.71967 3.76000 3.79597 3.95200 3.99231 4.05256 4.06380 4.17362 4.19549 4.20506 4.31791 4.34806 4.37617 4.52441 4.55924 4.60364 4.67193 4.74545 4.78909 4.81650 4.89591 4.90683 4.94586 5.00295 5.04217 5.07651 5.10315 5.11490 5.14100 5.25047 5.31217 5.33153 5.37265 5.45117 5.46277 5.48112 5.52560 6.22802 6.37935 6.47355 7.12534 7.17372 7.29147 8.00903 8.23756 9.26049 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.028917 B = 0.001602 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.051973 B =17478.993198 C =17592.292221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C -0.101 4.101 4 C -0.101 4.101 5 H 0.126 0.874 6 C -0.142 4.142 7 C 0.509 3.491 8 O -0.592 6.592 9 N -0.607 5.607 10 C 0.093 3.907 11 C -0.127 4.127 12 C -0.111 4.111 13 C -0.106 4.106 14 H 0.112 0.888 15 C 0.516 3.484 16 O -0.587 6.587 17 N -0.706 5.706 18 C 0.127 3.873 19 C 0.150 3.850 20 N -0.748 5.748 21 C -0.249 4.249 22 H 0.084 0.916 23 C -0.076 4.076 24 N -0.971 5.971 25 Si 0.980 3.020 26 H -0.287 1.287 27 H -0.296 1.296 28 H -0.264 1.264 29 C 0.134 3.866 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.042 0.958 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.418 0.582 47 H 0.048 0.952 48 H 0.054 0.946 49 H 0.041 0.959 50 H 0.036 0.964 51 H 0.373 0.627 52 H 0.252 0.748 53 H 0.061 0.939 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.558 -35.518 6.364 38.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.139 4.139 4 C -0.122 4.122 5 H 0.144 0.856 6 C -0.199 4.199 7 C 0.299 3.701 8 O -0.472 6.472 9 N -0.339 5.339 10 C -0.028 4.028 11 C -0.165 4.165 12 C -0.149 4.149 13 C -0.128 4.128 14 H 0.129 0.871 15 C 0.303 3.697 16 O -0.467 6.467 17 N -0.358 5.358 18 C 0.002 3.998 19 C 0.023 3.977 20 N -0.391 5.391 21 C -0.381 4.381 22 H 0.102 0.898 23 C -0.269 4.269 24 N -0.621 5.621 25 Si 0.808 3.192 26 H -0.214 1.214 27 H -0.223 1.223 28 H -0.189 1.189 29 C 0.010 3.990 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.135 0.865 42 H 0.130 0.870 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.109 0.891 46 H 0.255 0.745 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.059 0.941 50 H 0.054 0.946 51 H 0.205 0.795 52 H 0.061 0.939 53 H 0.079 0.921 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.881 -34.590 7.004 38.302 hybrid contribution 0.403 1.650 -0.472 1.763 sum -14.478 -32.940 6.533 36.570 Atomic orbital electron populations 1.21793 0.96143 1.02066 1.01397 1.21561 0.95723 0.94863 1.03358 1.21430 0.92825 0.98022 1.01637 1.21416 0.97193 0.90963 1.02623 0.85589 1.21836 1.01970 1.02089 0.93995 1.21553 0.80887 0.92720 0.74922 1.90692 1.56615 1.47701 1.52241 1.48235 1.11315 1.07681 1.66718 1.22258 0.94250 0.89132 0.97132 1.21946 1.01249 0.96527 0.96753 1.21612 0.96246 0.93453 1.03582 1.21509 0.99900 0.91492 0.99904 0.87054 1.21056 0.77845 0.88418 0.82420 1.90719 1.61346 1.60494 1.34181 1.45705 1.55477 1.19616 1.15050 1.21154 0.96092 0.84615 0.97938 1.20851 0.95181 0.87787 0.93896 1.42434 1.65713 1.17887 1.13069 1.19667 1.26263 1.00273 0.91883 0.89777 1.25676 1.02843 0.97810 1.00532 1.69839 1.50363 1.13021 1.28904 0.85056 0.77452 0.78092 0.78612 1.21389 1.22316 1.18869 1.20975 0.98178 0.83984 0.95829 0.93329 0.91571 0.93477 0.90439 0.90440 0.93332 0.93229 0.93917 0.88623 0.90895 0.89878 0.86464 0.86998 0.90566 0.91216 0.89125 0.74492 0.93320 0.92717 0.94083 0.94580 0.79541 0.93934 0.92071 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.12 -0.91 5.69 30.59 0.17 -0.74 16 3 C -0.10 -1.37 4.02 30.60 0.12 -1.25 16 4 C -0.10 -1.11 1.87 -11.54 -0.02 -1.13 16 5 H 0.13 0.58 6.50 -2.39 -0.02 0.56 16 6 C -0.14 -1.10 8.73 71.98 0.63 -0.47 16 7 C 0.51 10.28 6.88 87.66 0.60 10.89 16 8 O -0.59 -18.47 15.52 -3.02 -0.05 -18.51 16 9 N -0.61 -9.99 2.98 -819.74 -2.44 -12.43 16 10 C 0.09 0.63 5.49 86.36 0.47 1.10 16 11 C -0.13 -0.67 6.08 30.68 0.19 -0.48 16 12 C -0.11 -1.22 5.08 30.62 0.16 -1.07 16 13 C -0.11 -1.99 2.66 -11.61 -0.03 -2.02 16 14 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 15 C 0.52 14.30 7.16 87.66 0.63 14.93 16 16 O -0.59 -22.35 15.92 -3.04 -0.05 -22.40 16 17 N -0.71 -18.05 5.44 -463.05 -2.52 -20.57 16 18 C 0.13 4.37 5.79 86.38 0.50 4.87 16 19 C 0.15 5.65 6.37 86.38 0.55 6.20 16 20 N -0.75 -38.10 5.60 -343.44 -1.92 -40.02 16 21 C -0.25 -13.77 9.99 84.03 0.84 -12.93 16 22 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 23 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 24 N -0.97 -60.17 13.06 21.65 0.28 -59.88 16 25 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 26 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 27 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 28 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 29 C 0.13 3.08 5.06 86.22 0.44 3.51 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.08 0.43 6.59 -2.39 -0.02 0.41 16 35 H 0.05 0.88 8.08 -2.39 -0.02 0.86 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 37 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.10 0.31 6.62 -2.39 -0.02 0.29 16 39 H 0.07 0.41 7.16 -2.38 -0.02 0.39 16 40 H 0.08 0.45 8.14 -2.39 -0.02 0.44 16 41 H 0.12 0.16 5.31 -2.39 -0.01 0.15 16 42 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.09 0.77 7.53 -2.39 -0.02 0.75 16 46 H 0.42 7.55 7.87 -92.71 -0.73 6.82 16 47 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 51 H 0.37 20.68 7.67 -92.71 -0.71 19.97 16 52 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 53 H 0.06 1.88 7.00 -2.39 -0.02 1.86 16 54 H 0.07 1.66 7.94 -2.39 -0.02 1.64 16 Total: -1.00 -81.35 422.21 1.20 -80.15 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: -0.56 Total: 29.22 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 6.43 Total: 16.77 kcal Atomic # 7 Polarization: -126.30 SS G_CDS: -6.60 Total: -132.90 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.10 Total: -40.92 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -81.35 1.20 -80.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480607489.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.177 kcal (2) G-P(sol) polarization free energy of solvation -81.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds