Wall clock time and date at job start Sat Apr 11 2020 05:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46477 * 2 1 4 4 C 1.53008 * 109.46867 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46838 * 304.99997 * 4 3 2 6 6 C 1.52998 * 109.46808 * 64.99880 * 4 3 2 7 7 C 1.50696 * 109.47024 * 184.99947 * 4 3 2 8 8 O 1.21283 * 120.00283 * 0.02562 * 7 4 3 9 9 N 1.34781 * 119.99882 * 180.02562 * 7 4 3 10 10 C 1.46500 * 120.00005 * 180.02562 * 9 7 4 11 11 C 1.53936 * 113.83039 * 106.32600 * 10 9 7 12 12 N 1.47963 * 86.18081 * 90.64735 * 11 10 9 13 13 C 1.46905 * 110.99442 * 137.58205 * 12 11 10 14 14 C 1.50701 * 109.47159 * 70.64116 * 13 12 11 15 15 O 1.21279 * 119.99859 * 0.02562 * 14 13 12 16 16 N 1.34772 * 119.99976 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99894 * 0.02562 * 16 14 13 18 18 C 1.52999 * 109.47435 * 89.99246 * 17 16 14 19 19 C 1.46495 * 120.00208 * 179.97438 * 16 14 13 20 20 C 1.50698 * 109.46956 * 90.00130 * 19 16 14 21 21 H 1.08000 * 120.00414 * 0.02562 * 20 19 16 22 22 C 1.37878 * 120.00051 * 179.97438 * 20 19 16 23 23 N 1.31515 * 120.00262 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00112 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47071 * 60.00341 * 24 22 20 26 26 H 1.48504 * 109.47254 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46898 * 300.00076 * 24 22 20 28 28 C 1.47962 * 90.76258 * 24.69072 * 12 11 10 29 29 H 1.09008 * 109.47175 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47671 * 299.99550 * 1 2 3 31 31 H 1.08997 * 109.47486 * 60.00442 * 1 2 3 32 32 H 1.09000 * 109.47085 * 240.00011 * 2 1 3 33 33 H 1.09001 * 109.47011 * 119.99621 * 2 1 3 34 34 H 1.09000 * 109.47454 * 60.00237 * 3 2 1 35 35 H 1.08997 * 109.47623 * 299.99725 * 3 2 1 36 36 H 1.08999 * 109.46903 * 180.02562 * 6 4 3 37 37 H 1.08998 * 109.47333 * 299.99845 * 6 4 3 38 38 H 1.09005 * 109.47056 * 60.00318 * 6 4 3 39 39 H 0.97002 * 120.00027 * 359.97438 * 9 7 4 40 40 H 1.09002 * 112.93917 * 334.66429 * 10 9 7 41 41 H 1.09003 * 113.75649 * 204.96870 * 11 10 9 42 42 H 1.09007 * 113.75829 * 336.32990 * 11 10 9 43 43 H 1.08998 * 109.46445 * 190.64141 * 13 12 11 44 44 H 1.09000 * 109.47062 * 310.63837 * 13 12 11 45 45 H 1.09010 * 109.47034 * 209.99717 * 17 16 14 46 46 H 1.09001 * 109.46978 * 329.98945 * 17 16 14 47 47 H 1.08997 * 109.46886 * 60.00519 * 18 17 16 48 48 H 1.09001 * 109.47197 * 179.97438 * 18 17 16 49 49 H 1.08993 * 109.47495 * 300.00159 * 18 17 16 50 50 H 1.09003 * 109.47583 * 210.00172 * 19 16 14 51 51 H 1.08999 * 109.47355 * 330.00477 * 19 16 14 52 52 H 0.97001 * 120.00469 * 179.97438 * 23 22 20 53 53 H 1.08991 * 113.75516 * 220.99362 * 28 12 11 54 54 H 1.08998 * 113.86153 * 89.63735 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 1 3.9329 0.8534 0.8427 6 6 4.0804 0.8328 -1.3064 7 6 4.0721 2.8581 0.1245 8 8 3.2839 3.7764 0.2048 9 7 5.3971 3.1036 0.1459 10 6 5.8853 4.4795 0.2669 11 6 6.4659 4.8139 1.6528 12 7 7.7678 4.3741 1.1041 13 6 8.8465 5.2822 1.5163 14 6 9.1136 5.1089 2.9892 15 8 8.4692 4.3075 3.6322 16 7 10.0693 5.8437 3.5918 17 6 10.8481 6.8113 2.8150 18 6 10.1458 8.1703 2.8416 19 6 10.3286 5.6757 5.0238 20 6 11.3760 4.6107 5.2230 21 1 11.8059 4.1095 4.3685 22 6 11.7864 4.2770 6.4963 23 7 11.2633 4.8877 7.5371 24 14 13.0853 2.9574 6.7433 25 1 14.3386 3.3619 6.0570 26 1 13.3481 2.7870 8.1949 27 1 12.6013 1.6739 6.1743 28 6 7.3139 4.6795 -0.2707 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 5.1704 0.8325 -1.3058 37 1 3.7172 -0.1909 -1.3959 38 1 3.7174 1.4222 -2.1485 39 1 6.0276 2.3691 0.0820 40 1 5.1715 5.2173 -0.0994 41 1 6.4293 5.8750 1.8998 42 1 6.0885 4.1765 2.4525 43 1 9.7508 5.0510 0.9533 44 1 8.5493 6.3122 1.3195 45 1 11.8436 6.9081 3.2484 46 1 10.9325 6.4661 1.7845 47 1 10.0614 8.5155 3.8721 48 1 10.7255 8.8903 2.2640 49 1 9.1504 8.0735 2.4083 50 1 10.6840 6.6176 5.4417 51 1 9.4085 5.3790 5.5273 52 1 11.5517 4.6526 8.4329 53 1 7.6140 3.9348 -1.0078 54 1 7.5247 5.7008 -0.5880 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481550560.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:13 Heat of formation + Delta-G solvation = -79.163943 kcal Electronic energy + Delta-G solvation = -29991.485468 eV Core-core repulsion = 25962.809065 eV Total energy + Delta-G solvation = -4028.676403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.79850 -40.74406 -39.71415 -36.93510 -36.84409 -35.12309 -34.84899 -32.88863 -31.72636 -31.07361 -28.97696 -27.49911 -27.15283 -26.35244 -24.96752 -24.45703 -23.68095 -22.19660 -20.90860 -20.73776 -19.91383 -18.63783 -18.12771 -17.98109 -17.42138 -17.26342 -16.73087 -16.55950 -16.41060 -15.97174 -15.55125 -15.46746 -15.13447 -14.85846 -14.74754 -14.56240 -14.16386 -14.06554 -13.92326 -13.60835 -13.54202 -13.42638 -13.26422 -13.13665 -13.12591 -12.79973 -12.71337 -12.65349 -12.53516 -12.36319 -12.16231 -12.13441 -12.00174 -11.85284 -11.82593 -11.73441 -11.68752 -11.40884 -10.75757 -10.65463 -10.51959 -10.11883 -9.75276 -9.40781 -8.23082 -6.38203 1.34866 1.39720 1.46903 1.59837 1.87347 2.12389 2.26058 2.41201 2.95661 3.05942 3.44772 3.65248 3.69526 3.80775 3.82959 3.97785 4.09760 4.15033 4.29108 4.30631 4.37044 4.40526 4.42511 4.44895 4.47019 4.58893 4.63440 4.66591 4.78583 4.81626 4.85997 4.91482 4.93179 4.97615 4.98161 5.03197 5.04210 5.13225 5.19696 5.24360 5.28509 5.30702 5.37723 5.44195 5.49663 5.54537 5.57178 5.82572 5.92851 6.06134 6.55049 6.70049 6.83522 7.23535 7.28229 7.54036 8.83616 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.002203 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.265674 B =12704.196743 C =14011.950523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.097 4.097 4 C -0.108 4.108 5 H 0.107 0.893 6 C -0.139 4.139 7 C 0.515 3.485 8 O -0.585 6.585 9 N -0.696 5.696 10 C 0.120 3.880 11 C -0.001 4.001 12 N -0.480 5.480 13 C 0.016 3.984 14 C 0.494 3.506 15 O -0.585 6.585 16 N -0.606 5.606 17 C 0.100 3.900 18 C -0.160 4.160 19 C 0.264 3.736 20 C -0.541 4.541 21 H 0.053 0.947 22 C 0.004 3.996 23 N -0.930 5.930 24 Si 0.969 3.031 25 H -0.258 1.258 26 H -0.279 1.279 27 H -0.278 1.278 28 C 0.014 3.986 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.415 0.585 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.125 0.875 44 H 0.096 0.904 45 H 0.070 0.930 46 H 0.103 0.897 47 H 0.034 0.966 48 H 0.097 0.903 49 H 0.059 0.941 50 H 0.019 0.981 51 H -0.009 1.009 52 H 0.267 0.733 53 H 0.116 0.884 54 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.378 -3.091 -24.234 26.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.135 4.135 4 C -0.130 4.130 5 H 0.125 0.875 6 C -0.197 4.197 7 C 0.303 3.697 8 O -0.465 6.465 9 N -0.347 5.347 10 C 0.013 3.987 11 C -0.132 4.132 12 N -0.204 5.204 13 C -0.115 4.115 14 C 0.282 3.718 15 O -0.465 6.465 16 N -0.338 5.338 17 C -0.023 4.023 18 C -0.219 4.219 19 C 0.143 3.857 20 C -0.579 4.579 21 H 0.072 0.928 22 C -0.195 4.195 23 N -0.570 5.570 24 Si 0.793 3.207 25 H -0.183 1.183 26 H -0.204 1.204 27 H -0.204 1.204 28 C -0.115 4.115 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.252 0.748 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.143 0.857 44 H 0.114 0.886 45 H 0.089 0.911 46 H 0.121 0.879 47 H 0.054 0.946 48 H 0.115 0.885 49 H 0.078 0.922 50 H 0.037 0.963 51 H 0.009 0.991 52 H 0.075 0.925 53 H 0.134 0.866 54 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.958 -3.469 -23.486 26.582 hybrid contribution 0.667 0.182 1.250 1.429 sum -11.291 -3.287 -22.236 25.154 Atomic orbital electron populations 1.21779 0.95709 1.02074 1.01611 1.21587 0.96098 0.95252 1.02980 1.21385 0.92486 0.97707 1.01941 1.21397 0.97628 0.91440 1.02488 0.87504 1.21821 1.01885 1.01995 0.93966 1.21323 0.81941 0.92319 0.74117 1.90668 1.56349 1.47985 1.51506 1.45607 1.07046 1.08663 1.73382 1.22265 0.96351 0.85295 0.94756 1.24263 0.90858 0.99777 0.98290 1.68471 1.02223 1.44556 1.05125 1.22640 0.99449 0.98084 0.91327 1.21238 0.79571 0.80120 0.90829 1.90645 1.50845 1.37293 1.67685 1.48298 1.35744 1.39286 1.10477 1.21749 0.95206 0.88656 0.96648 1.22153 1.01315 0.96617 1.01772 1.18634 0.94368 0.95475 0.77241 1.21679 1.22295 1.21372 0.92576 0.92826 1.25908 0.99186 0.98879 0.95487 1.70053 1.44403 1.43606 0.98915 0.85455 0.79204 0.78779 0.77296 1.18255 1.20404 1.20355 1.24471 0.90989 1.04137 0.91883 0.91710 0.93539 0.92682 0.90143 0.91695 0.93527 0.92152 0.90977 0.89502 0.92369 0.74756 0.87961 0.90622 0.92602 0.85687 0.88627 0.91139 0.87865 0.94629 0.88474 0.92215 0.96267 0.99073 0.92457 0.86573 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.53 5.69 30.59 0.17 -1.35 16 3 C -0.10 -1.69 4.03 30.60 0.12 -1.56 16 4 C -0.11 -1.75 2.72 -11.54 -0.03 -1.78 16 5 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 6 C -0.14 -1.45 8.84 71.98 0.64 -0.81 16 7 C 0.51 11.86 7.15 87.65 0.63 12.48 16 8 O -0.59 -18.29 15.54 -3.04 -0.05 -18.34 16 9 N -0.70 -14.01 5.27 -446.11 -2.35 -16.36 16 10 C 0.12 2.52 4.40 46.56 0.20 2.73 16 11 C 0.00 -0.04 6.56 86.41 0.57 0.53 16 12 N -0.48 -12.46 5.95 -912.82 -5.43 -17.89 16 13 C 0.02 0.42 3.86 85.56 0.33 0.75 16 14 C 0.49 20.45 7.48 87.66 0.66 21.11 16 15 O -0.58 -30.95 15.13 -3.03 -0.05 -30.99 16 16 N -0.61 -25.58 2.46 -826.16 -2.03 -27.60 16 17 C 0.10 2.92 5.93 86.38 0.51 3.43 16 18 C -0.16 -3.80 10.24 71.98 0.74 -3.06 16 19 C 0.26 14.57 5.16 85.63 0.44 15.01 16 20 C -0.54 -31.69 9.39 25.60 0.24 -31.45 16 21 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 22 C 0.00 0.24 5.46 84.65 0.46 0.70 16 23 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 24 Si 0.97 45.52 29.54 68.60 2.03 47.55 16 25 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 28 C 0.01 0.21 7.71 86.41 0.67 0.88 16 29 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.76 6.57 -2.39 -0.02 0.75 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 1.02 7.95 -2.39 -0.02 1.01 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 0.61 7.56 -2.39 -0.02 0.59 16 37 H 0.09 0.64 6.57 -2.39 -0.02 0.63 16 38 H 0.06 0.65 8.14 -2.38 -0.02 0.64 16 39 H 0.42 6.89 8.16 -92.71 -0.76 6.14 16 40 H 0.10 2.22 7.51 -2.39 -0.02 2.20 16 41 H 0.08 2.05 7.78 -2.39 -0.02 2.04 16 42 H 0.06 2.04 8.09 -2.38 -0.02 2.02 16 43 H 0.13 2.68 7.40 -2.39 -0.02 2.66 16 44 H 0.10 1.91 6.74 -2.39 -0.02 1.90 16 45 H 0.07 2.24 8.07 -2.38 -0.02 2.22 16 46 H 0.10 2.20 6.44 -2.39 -0.02 2.19 16 47 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.06 1.28 7.22 -2.39 -0.02 1.27 16 50 H 0.02 1.08 8.07 -2.39 -0.02 1.06 16 51 H -0.01 -0.57 7.42 -2.39 -0.02 -0.59 16 52 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 53 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 54 H 0.11 1.15 7.80 -2.39 -0.02 1.13 16 Total: -1.00 -83.97 429.93 -0.42 -84.39 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.11 Total: 20.00 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 7.06 Total: 16.37 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -9.52 Total: -118.98 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -0.09 Total: -49.33 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -83.97 -0.42 -84.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481550560.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.228 kcal (2) G-P(sol) polarization free energy of solvation -83.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds