Wall clock time and date at job start Sat Apr 11 2020 05:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53007 * 109.47358 * 2 1 4 4 C 1.53001 * 109.47023 * 239.99920 * 2 1 3 5 5 C 1.50703 * 109.47398 * 120.00241 * 2 1 3 6 6 O 1.21283 * 119.99488 * 359.97438 * 5 2 1 7 7 N 1.34777 * 120.00290 * 180.02562 * 5 2 1 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 2 9 9 C 1.50700 * 109.46769 * 179.72341 * 8 7 5 10 10 O 1.21275 * 120.00486 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99600 * 179.97438 * 9 8 7 12 12 C 1.46924 * 120.63028 * 359.71961 * 11 9 8 13 13 C 1.52761 * 109.00517 * 233.58160 * 12 11 9 14 14 C 1.53038 * 109.38734 * 305.59033 * 13 12 11 15 15 C 1.53038 * 109.53664 * 61.23576 * 14 13 12 16 16 H 1.09001 * 109.49642 * 58.59363 * 15 14 13 17 17 C 1.53011 * 109.49670 * 178.68455 * 15 14 13 18 18 C 1.53001 * 109.46799 * 184.84306 * 17 15 14 19 19 N 1.46507 * 109.46595 * 180.02562 * 18 17 15 20 20 C 1.36934 * 119.99781 * 179.97438 * 19 18 17 21 21 H 1.08009 * 120.00145 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00176 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99864 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00113 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47036 * 60.00180 * 24 22 20 26 26 H 1.48504 * 109.46746 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46905 * 299.99928 * 24 22 20 28 28 C 1.46930 * 120.62709 * 179.97438 * 11 9 8 29 29 H 1.09011 * 109.47182 * 299.99947 * 1 2 3 30 30 H 1.09007 * 109.47253 * 59.99564 * 1 2 3 31 31 H 1.08998 * 109.47508 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46852 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.46731 * 300.00313 * 3 2 1 34 34 H 1.09003 * 109.46582 * 60.00448 * 3 2 1 35 35 H 1.08992 * 109.47503 * 300.00327 * 4 2 1 36 36 H 1.08998 * 109.46818 * 60.00401 * 4 2 1 37 37 H 1.09008 * 109.47076 * 179.97438 * 4 2 1 38 38 H 0.97001 * 119.99727 * 359.97438 * 7 5 2 39 39 H 1.09004 * 109.46963 * 299.72135 * 8 7 5 40 40 H 1.08994 * 109.47567 * 59.72287 * 8 7 5 41 41 H 1.09000 * 109.58872 * 353.41667 * 12 11 9 42 42 H 1.09008 * 109.58796 * 113.84770 * 12 11 9 43 43 H 1.09006 * 109.56355 * 185.55057 * 13 12 11 44 44 H 1.09000 * 109.36036 * 65.50489 * 13 12 11 45 45 H 1.09000 * 109.46049 * 301.22145 * 14 13 12 46 46 H 1.08997 * 109.45037 * 181.25578 * 14 13 12 47 47 H 1.08999 * 109.46660 * 304.84103 * 17 15 14 48 48 H 1.09000 * 109.46766 * 64.84074 * 17 15 14 49 49 H 1.08997 * 109.46868 * 299.99543 * 18 17 15 50 50 H 1.08998 * 109.47138 * 60.00200 * 18 17 15 51 51 H 0.96998 * 120.00192 * 0.02562 * 19 18 17 52 52 H 0.96997 * 119.99797 * 179.97438 * 23 22 20 53 53 H 1.08994 * 109.58685 * 246.15630 * 28 11 9 54 54 H 1.08992 * 109.58707 * 6.44665 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 8 1.2441 -1.1710 2.0290 7 7 3.3574 -0.8332 1.4440 8 6 3.8457 -1.5291 2.6370 9 6 5.3527 -1.5333 2.6345 10 8 5.9591 -1.0073 1.7255 11 7 6.0265 -2.1218 3.6426 12 6 5.3060 -2.7578 4.7539 13 6 5.8179 -2.1822 6.0730 14 6 7.3389 -2.3376 6.1388 15 6 7.9830 -1.5606 4.9884 16 1 7.7022 -0.5096 5.0570 17 6 9.5053 -1.6896 5.0742 18 6 10.1526 -0.8159 3.9979 19 7 11.6101 -0.9399 4.0796 20 6 12.4063 -0.2445 3.2093 21 1 11.9598 0.3958 2.4628 22 6 13.7873 -0.3616 3.2870 23 7 14.3314 -1.1414 4.1971 24 14 14.8734 0.5877 2.1002 25 1 14.6272 2.0433 2.2601 26 1 16.2996 0.2916 2.3895 27 1 14.5569 0.1821 0.7071 28 6 7.4957 -2.1345 3.6539 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6765 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 3.9877 -0.4645 0.8055 39 1 3.4852 -1.0172 3.5293 40 1 3.4795 -2.5557 2.6343 41 1 4.2386 -2.5579 4.6593 42 1 5.4815 -3.8335 4.7353 43 1 5.3612 -2.7165 6.9061 44 1 5.5573 -1.1254 6.1315 45 1 7.6001 -3.3926 6.0555 46 1 7.7029 -1.9474 7.0893 47 1 9.8426 -1.3637 6.0581 48 1 9.7910 -2.7299 4.9182 49 1 9.8152 -1.1418 3.0140 50 1 9.8667 0.2243 4.1539 51 1 12.0110 -1.5152 4.7498 52 1 15.2964 -1.2235 4.2512 53 1 7.8531 -3.1583 3.5438 54 1 7.8727 -1.5255 2.8323 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481990702.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:27 Heat of formation + Delta-G solvation = -110.333852 kcal Electronic energy + Delta-G solvation = -30001.854829 eV Core-core repulsion = 25971.826797 eV Total energy + Delta-G solvation = -4030.028031 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.73193 -40.91045 -39.02487 -36.99695 -36.65340 -35.64080 -35.03230 -33.44162 -32.35734 -30.00844 -28.69465 -28.25826 -27.93486 -26.19121 -25.87317 -24.03339 -23.66050 -22.23039 -21.45344 -20.82126 -19.95381 -19.15187 -18.28143 -17.87302 -17.20910 -17.05182 -16.75152 -16.62888 -16.11877 -15.84229 -15.51150 -15.34163 -15.29028 -14.94890 -14.79539 -14.71744 -14.61601 -14.27951 -14.07014 -13.94748 -13.50051 -13.43153 -13.33297 -13.08620 -12.98159 -12.90173 -12.81369 -12.64343 -12.59085 -12.31782 -12.18562 -11.97516 -11.92497 -11.89661 -11.88248 -11.76398 -11.58262 -11.21232 -11.00067 -10.93077 -10.81778 -10.29606 -9.73137 -9.03401 -7.98241 -5.27575 1.37686 1.44559 1.48161 1.54457 1.54529 1.62966 2.25893 2.53653 3.26445 3.34511 3.56412 3.63580 3.80824 3.82860 3.88459 3.89878 4.05310 4.07986 4.18120 4.22467 4.30362 4.32879 4.39964 4.49357 4.52906 4.68146 4.69107 4.69608 4.71317 4.80920 4.83905 4.86129 4.90388 4.92273 4.94149 4.99517 5.03906 5.09510 5.17103 5.22377 5.25436 5.29621 5.31589 5.35386 5.37283 5.44152 5.46735 5.51421 6.24471 6.25682 6.38554 6.93317 7.09501 7.30300 8.05873 8.30388 9.24860 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.002152 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.856353 B =13009.963874 C =14910.258648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.523 3.477 6 O -0.574 6.574 7 N -0.717 5.717 8 C 0.106 3.894 9 C 0.506 3.494 10 O -0.577 6.577 11 N -0.601 5.601 12 C 0.096 3.904 13 C -0.129 4.129 14 C -0.113 4.113 15 C -0.084 4.084 16 H 0.063 0.937 17 C -0.105 4.105 18 C 0.150 3.850 19 N -0.747 5.747 20 C -0.251 4.251 21 H 0.070 0.930 22 C -0.075 4.075 23 N -0.967 5.967 24 Si 0.975 3.025 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.278 1.278 28 C 0.117 3.883 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.413 0.587 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.015 0.985 50 H 0.009 0.991 51 H 0.375 0.625 52 H 0.253 0.747 53 H 0.076 0.924 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.101 -2.376 -2.428 31.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.087 4.087 3 C -0.198 4.198 4 C -0.198 4.198 5 C 0.311 3.689 6 O -0.454 6.454 7 N -0.371 5.371 8 C -0.021 4.021 9 C 0.294 3.706 10 O -0.457 6.457 11 N -0.333 5.333 12 C -0.025 4.025 13 C -0.167 4.167 14 C -0.150 4.150 15 C -0.104 4.104 16 H 0.082 0.918 17 C -0.143 4.143 18 C 0.024 3.976 19 N -0.389 5.389 20 C -0.383 4.383 21 H 0.088 0.912 22 C -0.268 4.268 23 N -0.618 5.618 24 Si 0.803 3.197 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.006 4.006 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.252 0.748 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.124 0.876 42 H 0.109 0.891 43 H 0.123 0.877 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.033 0.967 50 H 0.027 0.973 51 H 0.207 0.793 52 H 0.062 0.938 53 H 0.094 0.906 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -31.302 -2.331 -2.456 31.485 hybrid contribution 1.700 0.443 -0.480 1.821 sum -29.602 -1.887 -2.935 29.807 Atomic orbital electron populations 1.21661 0.91467 1.02390 1.02709 1.20871 0.98284 0.96976 0.92545 1.21902 1.01431 0.92812 1.03705 1.21898 1.01442 1.00419 0.96045 1.21128 0.81200 0.78740 0.87823 1.90670 1.56014 1.50312 1.48379 1.45857 1.07737 1.58263 1.25279 1.21152 0.89360 1.00765 0.90823 1.20868 0.90490 0.77517 0.81715 1.90707 1.70644 1.47009 1.37343 1.48160 1.06885 1.55476 1.22798 1.22083 0.97224 0.98355 0.84831 1.21840 0.95254 1.02147 0.97496 1.21582 0.95471 1.00680 0.97290 1.21337 0.93630 1.00220 0.95214 0.91825 1.21600 0.94300 0.99876 0.98553 1.20851 0.83181 0.96652 0.96917 1.42579 1.01471 1.54971 1.39917 1.19579 0.89004 1.19815 1.09925 0.91227 1.25603 0.98026 1.01802 1.01327 1.69803 1.10278 1.43597 1.38084 0.85192 0.77518 0.78387 0.78560 1.20382 1.21655 1.20441 1.21668 0.78884 1.01694 0.98315 0.92975 0.89670 0.92906 0.92080 0.89236 0.92526 0.92433 0.89251 0.92049 0.74845 0.87154 0.86964 0.87551 0.89118 0.87672 0.91892 0.90709 0.90956 0.91521 0.91542 0.96678 0.97282 0.79291 0.93844 0.90565 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 7.76 71.98 0.56 -1.08 16 2 C -0.08 -1.15 0.87 -52.93 -0.05 -1.20 16 3 C -0.14 -1.61 8.37 71.98 0.60 -1.01 16 4 C -0.14 -1.56 8.37 71.98 0.60 -0.95 16 5 C 0.52 10.18 6.48 87.66 0.57 10.75 16 6 O -0.57 -14.61 15.98 -3.04 -0.05 -14.66 16 7 N -0.72 -13.25 5.31 -466.79 -2.48 -15.73 16 8 C 0.11 1.79 4.50 85.63 0.39 2.18 16 9 C 0.51 11.37 7.77 87.66 0.68 12.05 16 10 O -0.58 -17.76 15.08 -3.01 -0.05 -17.80 16 11 N -0.60 -11.86 2.98 -819.67 -2.44 -14.30 16 12 C 0.10 1.11 6.31 86.22 0.54 1.65 16 13 C -0.13 -1.49 6.06 30.53 0.19 -1.30 16 14 C -0.11 -1.86 5.17 30.62 0.16 -1.70 16 15 C -0.08 -2.01 2.34 -10.70 -0.03 -2.03 16 16 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 17 C -0.10 -3.27 4.80 30.60 0.15 -3.12 16 18 C 0.15 6.32 6.02 86.38 0.52 6.84 16 19 N -0.75 -39.75 5.60 -343.44 -1.92 -41.68 16 20 C -0.25 -14.74 9.99 84.03 0.84 -13.90 16 21 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 22 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 23 N -0.97 -60.22 13.06 21.65 0.28 -59.93 16 24 Si 0.98 47.35 29.55 68.60 2.03 49.37 16 25 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 28 C 0.12 2.92 5.33 86.37 0.46 3.38 16 29 H 0.05 0.79 8.10 -2.38 -0.02 0.77 16 30 H 0.08 0.71 8.14 -2.38 -0.02 0.70 16 31 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 32 H 0.06 0.73 7.56 -2.39 -0.02 0.72 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.06 0.71 7.57 -2.38 -0.02 0.69 16 38 H 0.41 7.78 6.27 -92.71 -0.58 7.20 16 39 H 0.11 1.62 7.68 -2.38 -0.02 1.60 16 40 H 0.11 1.60 7.95 -2.39 -0.02 1.58 16 41 H 0.11 0.79 5.93 -2.39 -0.01 0.78 16 42 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.02 0.66 6.70 -2.39 -0.02 0.65 16 50 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 51 H 0.38 20.80 7.67 -92.71 -0.71 20.09 16 52 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 53 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 54 H 0.07 2.15 5.73 -2.39 -0.01 2.13 16 Total: -1.00 -76.48 422.06 1.61 -74.87 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -0.41 Total: 33.28 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 6.65 Total: 6.58 kcal Atomic # 7 Polarization: -125.08 SS G_CDS: -6.56 Total: -131.64 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.09 Total: -32.46 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.37 kcal Total: -76.48 1.61 -74.87 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481990702.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.464 kcal (2) G-P(sol) polarization free energy of solvation -76.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds