Wall clock time and date at job start Sat Apr 11 2020 05:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47366 * 2 1 4 4 C 1.53007 * 109.46926 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47345 * 304.99947 * 4 3 2 6 6 C 1.52998 * 109.47119 * 65.00478 * 4 3 2 7 7 C 1.50707 * 109.46982 * 185.00068 * 4 3 2 8 8 O 1.21283 * 119.99655 * 0.02562 * 7 4 3 9 9 N 1.34770 * 119.99952 * 180.02562 * 7 4 3 10 10 C 1.46499 * 119.99981 * 180.02562 * 9 7 4 11 11 C 1.53004 * 109.47218 * 174.85708 * 10 9 7 12 12 N 1.46904 * 110.05401 * 302.09784 * 11 10 9 13 13 C 1.46907 * 110.99568 * 303.61913 * 12 11 10 14 14 C 1.50697 * 109.46744 * 185.60351 * 13 12 11 15 15 O 1.21291 * 120.00241 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99815 * 179.97438 * 14 13 12 17 17 C 1.37099 * 119.99730 * 180.02562 * 16 14 13 18 18 H 1.07997 * 119.99835 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99678 * 180.02562 * 17 16 14 20 20 N 1.31412 * 119.99962 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99879 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47285 * 90.00226 * 21 19 17 23 23 H 1.48502 * 109.46901 * 210.00515 * 21 19 17 24 24 H 1.48506 * 109.47076 * 330.00180 * 21 19 17 25 25 C 1.53874 * 110.03342 * 180.67705 * 11 10 9 26 26 C 1.54265 * 106.60016 * 240.71312 * 25 11 10 27 27 C 1.54887 * 104.19424 * 336.39409 * 26 25 11 28 28 C 1.54265 * 110.03202 * 63.50765 * 11 10 9 29 29 H 1.09005 * 109.46656 * 300.00203 * 1 2 3 30 30 H 1.09004 * 109.47034 * 59.99681 * 1 2 3 31 31 H 1.08995 * 109.47740 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46656 * 239.99797 * 2 1 3 33 33 H 1.09004 * 109.47034 * 120.00319 * 2 1 3 34 34 H 1.08997 * 109.47108 * 60.00243 * 3 2 1 35 35 H 1.08995 * 109.47437 * 299.99891 * 3 2 1 36 36 H 1.09009 * 109.46737 * 299.99758 * 6 4 3 37 37 H 1.09003 * 109.47322 * 59.99263 * 6 4 3 38 38 H 1.08994 * 109.47496 * 179.97438 * 6 4 3 39 39 H 0.97001 * 119.99961 * 359.97438 * 9 7 4 40 40 H 1.08996 * 109.47215 * 54.85568 * 10 9 7 41 41 H 1.09001 * 109.46721 * 294.85159 * 10 9 7 42 42 H 1.00903 * 111.00461 * 67.57313 * 12 11 10 43 43 H 1.08993 * 109.47089 * 305.60923 * 13 12 11 44 44 H 1.08999 * 109.46953 * 65.60672 * 13 12 11 45 45 H 0.96997 * 119.99816 * 0.02562 * 16 14 13 46 46 H 0.96994 * 120.00143 * 179.97438 * 20 19 17 47 47 H 1.08996 * 110.02989 * 121.43066 * 25 11 10 48 48 H 1.09003 * 110.02928 * 359.97438 * 25 11 10 49 49 H 1.08998 * 110.48246 * 95.06468 * 26 25 11 50 50 H 1.08997 * 110.48625 * 217.71136 * 26 25 11 51 51 H 1.09002 * 110.75879 * 156.25543 * 27 26 25 52 52 H 1.09000 * 110.75515 * 279.62451 * 27 26 25 53 53 H 1.09006 * 110.48490 * 24.22313 * 28 11 10 54 54 H 1.08999 * 110.49407 * 261.57404 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9338 0.8528 0.8409 6 6 4.0795 0.8330 -1.3083 7 6 4.0726 2.8577 0.1232 8 8 3.2845 3.7760 0.2045 9 7 5.3976 3.1030 0.1436 10 6 5.8861 4.4789 0.2646 11 6 7.4108 4.4694 0.3922 12 7 7.8140 3.6668 1.5546 13 6 7.1796 4.1635 2.7829 14 6 7.7205 3.4072 3.9688 15 8 8.5530 2.5400 3.8067 16 7 7.2800 3.6950 5.2097 17 6 7.7725 3.0072 6.2886 18 1 8.5137 2.2351 6.1442 19 6 7.3180 3.3037 7.5678 20 7 6.4157 4.2428 7.7433 21 14 7.9895 2.3671 9.0379 22 1 9.1850 3.0701 9.5687 23 1 6.9489 2.2929 10.0948 24 1 8.3683 0.9937 8.6189 25 6 7.9365 5.9083 0.5371 26 6 8.8719 6.1588 -0.6638 27 6 9.3266 4.7418 -1.0931 28 6 8.0449 3.8957 -0.8917 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9562 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 3.7160 -0.1908 -1.3979 37 1 3.7158 1.4225 -2.1499 38 1 5.1695 0.8333 -1.3090 39 1 6.0279 2.3685 0.0790 40 1 5.4503 4.9427 1.1495 41 1 5.5992 5.0454 -0.6213 42 1 7.6058 2.6902 1.4095 43 1 7.3959 5.2254 2.8997 44 1 6.1014 4.0172 2.7197 45 1 6.6146 4.3887 5.3393 46 1 6.0982 4.4495 8.6362 47 1 8.4909 6.0110 1.4699 48 1 7.1055 6.6133 0.5161 49 1 8.3302 6.6472 -1.4738 50 1 9.7295 6.7592 -0.3606 51 1 9.6337 4.7349 -2.1389 52 1 10.1310 4.3832 -0.4508 53 1 7.3697 4.0188 -1.7386 54 1 8.2992 2.8447 -0.7550 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482213079.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:38 Heat of formation + Delta-G solvation = -127.062172 kcal Electronic energy + Delta-G solvation = -30824.487423 eV Core-core repulsion = 26793.733997 eV Total energy + Delta-G solvation = -4030.753426 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.47015 -40.38088 -39.57075 -36.95395 -36.07573 -35.73146 -34.61079 -33.26037 -32.87516 -30.16094 -29.78407 -27.98903 -27.51953 -26.34459 -25.38801 -24.22785 -22.23700 -21.67171 -20.98943 -20.84337 -20.01238 -19.76524 -18.25625 -17.85429 -17.39057 -16.88485 -16.78672 -16.40464 -16.29920 -15.98647 -15.79166 -15.56509 -15.32050 -14.97375 -14.82498 -14.56139 -14.32736 -14.09524 -13.96388 -13.75544 -13.51963 -13.45615 -13.15964 -13.05768 -12.78852 -12.76522 -12.45074 -12.40771 -12.17524 -12.14079 -12.05724 -11.90274 -11.87892 -11.86816 -11.75074 -11.70600 -11.51324 -11.43710 -11.34604 -10.77093 -10.36878 -10.16416 -10.02959 -9.37809 -8.47500 -5.96761 1.37062 1.40567 1.53617 1.59804 2.03113 2.12227 2.27949 2.86005 3.19283 3.43699 3.55158 3.60132 3.72969 3.80297 3.86757 3.93848 4.21576 4.26906 4.29935 4.31755 4.35771 4.36587 4.39137 4.47296 4.58067 4.60090 4.62893 4.72080 4.78887 4.86500 4.88564 4.93347 4.94131 4.99959 5.01482 5.10028 5.10674 5.14923 5.20444 5.27206 5.28589 5.30715 5.37596 5.39597 5.41439 5.48938 5.58848 5.87940 6.07781 6.38737 6.45331 6.57823 7.11014 7.18109 7.54253 8.08900 8.70002 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.006885 B = 0.003505 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4066.112466 B = 7986.956521 C =11127.759948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.097 4.097 4 C -0.110 4.110 5 H 0.104 0.896 6 C -0.139 4.139 7 C 0.512 3.488 8 O -0.584 6.584 9 N -0.717 5.717 10 C 0.096 3.904 11 C 0.107 3.893 12 N -0.652 5.652 13 C 0.065 3.935 14 C 0.441 3.559 15 O -0.616 6.616 16 N -0.575 5.575 17 C -0.332 4.332 18 H 0.081 0.919 19 C -0.014 4.014 20 N -0.922 5.922 21 Si 0.994 3.006 22 H -0.271 1.271 23 H -0.272 1.272 24 H -0.270 1.270 25 C -0.117 4.117 26 C -0.116 4.116 27 C -0.116 4.116 28 C -0.107 4.107 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.408 0.592 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.343 0.657 43 H 0.099 0.901 44 H 0.052 0.948 45 H 0.393 0.607 46 H 0.277 0.723 47 H 0.061 0.939 48 H 0.073 0.927 49 H 0.079 0.921 50 H 0.066 0.934 51 H 0.082 0.918 52 H 0.056 0.944 53 H 0.087 0.913 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.792 -2.984 -21.979 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.135 4.135 4 C -0.131 4.131 5 H 0.122 0.878 6 C -0.196 4.196 7 C 0.300 3.700 8 O -0.464 6.464 9 N -0.370 5.370 10 C -0.030 4.030 11 C 0.016 3.984 12 N -0.284 5.284 13 C -0.067 4.067 14 C 0.229 3.771 15 O -0.503 6.503 16 N -0.212 5.212 17 C -0.462 4.462 18 H 0.099 0.901 19 C -0.214 4.214 20 N -0.563 5.563 21 Si 0.817 3.183 22 H -0.196 1.196 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.155 4.155 26 C -0.154 4.154 27 C -0.153 4.153 28 C -0.144 4.144 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.245 0.755 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.163 0.837 43 H 0.117 0.883 44 H 0.069 0.931 45 H 0.227 0.773 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.091 0.909 49 H 0.098 0.902 50 H 0.085 0.915 51 H 0.100 0.900 52 H 0.075 0.925 53 H 0.105 0.895 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.290 -2.483 -21.748 22.305 hybrid contribution -0.853 -0.265 1.321 1.595 sum -5.143 -2.748 -20.426 21.242 Atomic orbital electron populations 1.21778 0.95635 1.02124 1.01600 1.21585 0.96176 0.95185 1.02951 1.21378 0.92515 0.97765 1.01859 1.21409 0.97701 0.91597 1.02442 0.87791 1.21819 1.01848 1.02044 0.93879 1.21271 0.82015 0.92246 0.74464 1.90675 1.56368 1.48058 1.51300 1.45929 1.07072 1.09559 1.74400 1.22158 0.95521 0.83563 1.01779 1.22012 0.90042 0.95249 0.91113 1.60351 1.61150 1.06769 1.00101 1.21480 0.96355 0.99908 0.88981 1.20760 0.85116 0.86510 0.84732 1.90483 1.37016 1.36821 1.85930 1.41963 1.38799 1.35124 1.05355 1.19677 1.22799 1.17858 0.85844 0.90086 1.26074 0.96493 0.97706 1.01127 1.69685 1.30316 1.31673 1.24667 0.84917 0.78021 0.78373 0.76974 1.19634 1.19663 1.19492 1.22254 0.99642 0.93605 1.00005 1.22301 0.98681 0.97447 0.96922 1.22398 0.96909 0.94606 1.01435 1.22432 0.97369 1.00087 0.94551 0.93661 0.92570 0.91612 0.90006 0.91870 0.93720 0.92099 0.89423 0.92338 0.90976 0.75499 0.93135 0.90574 0.83726 0.88301 0.93064 0.77342 0.91355 0.92037 0.90884 0.90248 0.91537 0.89983 0.92526 0.89457 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 71.98 0.71 -1.57 16 2 C -0.12 -1.83 5.69 30.59 0.17 -1.66 16 3 C -0.10 -1.95 4.03 30.60 0.12 -1.82 16 4 C -0.11 -2.06 2.73 -11.54 -0.03 -2.09 16 5 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 6 C -0.14 -1.72 8.84 71.98 0.64 -1.08 16 7 C 0.51 12.92 7.15 87.66 0.63 13.54 16 8 O -0.58 -19.77 15.91 -3.04 -0.05 -19.82 16 9 N -0.72 -15.25 5.05 -463.06 -2.34 -17.59 16 10 C 0.10 2.18 3.68 86.38 0.32 2.50 16 11 C 0.11 2.32 0.55 4.25 0.00 2.32 16 12 N -0.65 -19.04 5.51 -470.55 -2.59 -21.63 16 13 C 0.07 2.29 5.28 85.55 0.45 2.74 16 14 C 0.44 21.11 7.83 87.65 0.69 21.80 16 15 O -0.62 -33.62 15.90 -3.06 -0.05 -33.67 16 16 N -0.58 -30.13 5.29 -306.98 -1.62 -31.75 16 17 C -0.33 -19.06 9.68 84.04 0.81 -18.24 16 18 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 19 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 20 N -0.92 -50.86 13.05 21.66 0.28 -50.58 16 21 Si 0.99 43.32 29.55 68.60 2.03 45.35 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 C -0.12 -2.50 5.54 31.32 0.17 -2.32 16 26 C -0.12 -1.97 6.83 31.67 0.22 -1.76 16 27 C -0.12 -1.96 6.91 31.88 0.22 -1.74 16 28 C -0.11 -1.79 5.48 31.67 0.17 -1.61 16 29 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.95 6.56 -2.38 -0.02 0.94 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 34 H 0.04 1.12 7.95 -2.39 -0.02 1.10 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 0.82 6.56 -2.38 -0.02 0.80 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.73 7.56 -2.39 -0.02 0.71 16 39 H 0.41 7.07 6.61 -92.71 -0.61 6.46 16 40 H 0.05 1.41 6.65 -2.39 -0.02 1.39 16 41 H 0.08 1.65 8.10 -2.39 -0.02 1.63 16 42 H 0.34 9.97 7.35 -89.69 -0.66 9.31 16 43 H 0.10 3.27 6.52 -2.39 -0.02 3.26 16 44 H 0.05 1.76 6.67 -2.39 -0.02 1.74 16 45 H 0.39 19.99 7.90 -92.71 -0.73 19.26 16 46 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 47 H 0.06 1.60 6.78 -2.39 -0.02 1.59 16 48 H 0.07 1.44 7.67 -2.39 -0.02 1.42 16 49 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 53 H 0.09 1.20 7.83 -2.38 -0.02 1.18 16 54 H 0.07 1.24 7.87 -2.39 -0.02 1.22 16 Total: -1.00 -71.71 420.84 0.33 -71.38 By element: Atomic # 1 Polarization: 50.74 SS G_CDS: -1.10 Total: 49.64 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 5.77 Total: 8.68 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -6.27 Total: -121.55 kcal Atomic # 8 Polarization: -53.40 SS G_CDS: -0.10 Total: -53.49 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -71.71 0.33 -71.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482213079.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.682 kcal (2) G-P(sol) polarization free energy of solvation -71.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds