Wall clock time and date at job start Sat Apr 11 2020 05:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46987 * 2 1 4 4 C 1.53005 * 109.46987 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46896 * 304.99738 * 4 3 2 6 6 C 1.52998 * 109.47068 * 64.99502 * 4 3 2 7 7 C 1.50700 * 109.47416 * 184.99997 * 4 3 2 8 8 O 1.21284 * 119.99815 * 359.97438 * 7 4 3 9 9 N 1.34770 * 120.00254 * 179.97438 * 7 4 3 10 10 C 1.46496 * 120.00242 * 179.97438 * 9 7 4 11 11 C 1.53008 * 109.52094 * 59.87497 * 10 9 7 12 12 C 1.53117 * 109.52778 * 179.97438 * 10 9 7 13 13 C 1.53046 * 109.30682 * 62.29447 * 12 10 9 14 14 N 1.46923 * 109.47659 * 59.16670 * 13 12 10 15 15 C 1.46895 * 110.98674 * 174.17961 * 14 13 12 16 16 C 1.50706 * 109.47190 * 190.61731 * 15 14 13 17 17 O 1.21284 * 119.99964 * 6.26249 * 16 15 14 18 18 N 1.34776 * 120.00031 * 186.26543 * 16 15 14 19 19 C 1.37096 * 120.00038 * 179.97438 * 18 16 15 20 20 H 1.08001 * 119.99870 * 0.02562 * 19 18 16 21 21 C 1.38944 * 119.99947 * 179.97438 * 19 18 16 22 22 N 1.31417 * 120.00091 * 179.97438 * 21 19 18 23 23 Si 1.86809 * 120.00286 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47167 * 89.99441 * 23 21 19 25 25 H 1.48493 * 109.47011 * 210.00085 * 23 21 19 26 26 H 1.48504 * 109.46753 * 329.99577 * 23 21 19 27 27 C 1.46852 * 111.21787 * 298.28157 * 14 13 12 28 28 C 1.53033 * 109.52633 * 61.74278 * 27 14 13 29 29 H 1.09000 * 109.47258 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46938 * 300.00315 * 1 2 3 31 31 H 1.09003 * 109.47072 * 59.99683 * 1 2 3 32 32 H 1.09000 * 109.46938 * 239.99685 * 2 1 3 33 33 H 1.09003 * 109.46635 * 120.00007 * 2 1 3 34 34 H 1.09000 * 109.47539 * 60.00052 * 3 2 1 35 35 H 1.09003 * 109.47439 * 299.99515 * 3 2 1 36 36 H 1.09000 * 109.47495 * 179.97438 * 6 4 3 37 37 H 1.08998 * 109.47760 * 300.00653 * 6 4 3 38 38 H 1.09008 * 109.47118 * 60.00274 * 6 4 3 39 39 H 0.97003 * 119.99990 * 0.02562 * 9 7 4 40 40 H 1.08998 * 109.47039 * 180.12484 * 11 10 9 41 41 H 1.08996 * 109.46867 * 300.13033 * 11 10 9 42 42 H 1.09009 * 109.46817 * 60.12382 * 11 10 9 43 43 H 1.08992 * 109.50899 * 182.25670 * 12 10 9 44 44 H 1.09011 * 109.50268 * 302.34343 * 12 10 9 45 45 H 1.09006 * 109.45940 * 179.21660 * 13 12 10 46 46 H 1.09000 * 109.46432 * 299.18347 * 13 12 10 47 47 H 1.08998 * 109.46905 * 310.61593 * 15 14 13 48 48 H 1.09002 * 109.47368 * 70.61307 * 15 14 13 49 49 H 0.97004 * 120.00043 * 359.97438 * 18 16 15 50 50 H 0.97001 * 120.00001 * 180.02562 * 22 21 19 51 51 H 1.09009 * 109.45839 * 301.72619 * 27 14 13 52 52 H 1.08996 * 109.46412 * 181.76498 * 27 14 13 53 53 H 1.09005 * 109.50402 * 180.87724 * 28 27 14 54 54 H 1.08999 * 109.53051 * 60.78287 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0806 0.8325 -1.3063 7 6 4.0724 2.8579 0.1245 8 8 3.2842 3.7763 0.2039 9 7 5.3974 3.1031 0.1470 10 6 5.8857 4.4791 0.2668 11 6 5.3726 5.0919 1.5715 12 6 7.4169 4.4804 0.2690 13 6 7.9253 3.9221 -1.0623 14 7 7.4181 4.7489 -2.1659 15 6 7.9964 4.3266 -3.4484 16 6 7.6652 5.3452 -4.5085 17 8 7.1112 6.3800 -4.2032 18 7 7.9847 5.1063 -5.7959 19 6 7.6830 6.0328 -6.7604 20 1 7.1896 6.9543 -6.4884 21 6 8.0129 5.7867 -8.0875 22 7 7.7232 6.6746 -9.0121 23 14 8.8669 4.1932 -8.5577 24 1 7.8480 3.1617 -8.8787 25 1 9.7280 4.4249 -9.7451 26 1 9.7035 3.7265 -7.4230 27 6 5.9507 4.7250 -2.2169 28 6 5.3842 5.3067 -0.9198 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 5.1706 0.8329 -1.3061 37 1 3.7172 -0.1912 -1.3960 38 1 3.7176 1.4218 -2.1485 39 1 6.0278 2.3686 0.0831 40 1 5.7346 6.1164 1.6587 41 1 4.2827 5.0906 1.5695 42 1 5.7352 4.5053 2.4157 43 1 7.7798 5.5000 0.3984 44 1 7.7802 3.8581 1.0870 45 1 9.0152 3.9349 -1.0689 46 1 7.5735 2.8977 -1.1846 47 1 9.0787 4.2441 -3.3493 48 1 7.5828 3.3589 -3.7325 49 1 8.4282 4.2789 -6.0401 50 1 7.9531 6.5026 -9.9386 51 1 5.6081 3.6967 -2.3339 52 1 5.6069 5.3205 -3.0626 53 1 4.2950 5.2744 -0.9516 54 1 5.7145 6.3394 -0.8088 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483963151.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:50 Heat of formation + Delta-G solvation = -109.473555 kcal Electronic energy + Delta-G solvation = -31276.010168 eV Core-core repulsion = 27246.019442 eV Total energy + Delta-G solvation = -4029.990726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.77754 -40.46906 -39.24806 -37.01064 -36.28582 -35.75390 -33.78245 -33.62495 -32.02982 -31.86180 -30.27934 -27.76515 -27.51950 -25.70755 -25.09532 -24.28305 -22.91664 -22.08520 -21.26025 -20.78265 -20.23303 -20.06073 -18.18584 -17.71895 -16.97274 -16.81274 -16.59673 -16.48849 -16.14937 -15.79012 -15.45488 -15.32261 -15.11392 -14.97089 -14.86201 -14.71060 -14.43261 -14.10907 -13.93713 -13.81410 -13.54030 -13.31860 -13.26324 -13.11787 -13.01035 -12.88297 -12.71971 -12.58433 -12.42346 -12.35369 -12.17536 -12.09530 -11.97653 -11.83819 -11.71686 -11.64533 -11.47522 -11.39762 -11.34019 -10.40085 -10.36796 -10.23568 -9.97478 -9.13637 -8.41065 -6.01987 1.29135 1.35364 1.44359 1.73821 1.97706 2.23103 2.24628 2.65077 3.15091 3.21901 3.61259 3.78088 3.81280 3.82798 3.95058 3.97940 4.12278 4.26152 4.29480 4.31437 4.36684 4.39588 4.40928 4.51258 4.53274 4.60552 4.65105 4.78008 4.79323 4.80601 4.85861 4.90245 4.94271 4.98194 4.98930 5.02537 5.10070 5.14594 5.19566 5.24026 5.28760 5.29810 5.34451 5.44015 5.50411 5.53524 5.68541 5.91341 6.04829 6.27643 6.60929 6.68413 6.89508 7.38664 7.40918 7.99713 8.76949 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.002801 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.662349 B = 9993.359460 C =11380.744167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.103 4.103 5 H 0.124 0.876 6 C -0.143 4.143 7 C 0.511 3.489 8 O -0.576 6.576 9 N -0.708 5.708 10 C 0.180 3.820 11 C -0.155 4.155 12 C -0.110 4.110 13 C 0.053 3.947 14 N -0.536 5.536 15 C 0.056 3.944 16 C 0.448 3.552 17 O -0.607 6.607 18 N -0.594 5.594 19 C -0.327 4.327 20 H 0.051 0.949 21 C -0.018 4.018 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.228 1.228 27 C 0.073 3.927 28 C -0.115 4.115 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.037 0.963 39 H 0.412 0.588 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.098 0.902 46 H 0.052 0.948 47 H 0.126 0.874 48 H 0.075 0.925 49 H 0.389 0.611 50 H 0.279 0.721 51 H 0.032 0.968 52 H 0.039 0.961 53 H 0.059 0.941 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.423 -22.266 23.422 32.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.137 4.137 4 C -0.125 4.125 5 H 0.142 0.858 6 C -0.201 4.201 7 C 0.299 3.701 8 O -0.455 6.455 9 N -0.361 5.361 10 C 0.094 3.906 11 C -0.213 4.213 12 C -0.148 4.148 13 C -0.074 4.074 14 N -0.261 5.261 15 C -0.075 4.075 16 C 0.236 3.764 17 O -0.491 6.491 18 N -0.236 5.236 19 C -0.456 4.456 20 H 0.069 0.931 21 C -0.216 4.216 22 N -0.578 5.578 23 Si 0.786 3.214 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.151 1.151 27 C -0.055 4.055 28 C -0.154 4.154 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.056 0.944 39 H 0.249 0.751 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.128 0.872 45 H 0.117 0.883 46 H 0.070 0.930 47 H 0.144 0.856 48 H 0.093 0.907 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.050 0.950 52 H 0.058 0.942 53 H 0.078 0.922 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.191 -20.358 23.581 31.229 hybrid contribution -0.076 -0.650 -1.416 1.560 sum -2.268 -21.008 22.164 30.622 Atomic orbital electron populations 1.21792 0.96077 1.02037 1.01419 1.21570 0.95808 0.95212 1.03080 1.21379 0.93068 0.97631 1.01596 1.21369 0.97162 0.91958 1.01962 0.85827 1.21838 1.01894 1.01886 0.94433 1.21219 0.82289 0.92064 0.74550 1.90650 1.56565 1.47646 1.50657 1.46057 1.06894 1.08781 1.74373 1.20277 0.94727 0.81516 0.94033 1.22105 1.01910 1.01134 0.96119 1.21887 0.91442 1.03938 0.97492 1.22294 1.01195 0.94404 0.89464 1.61445 1.06657 1.55120 1.02885 1.21817 1.02691 0.94728 0.88227 1.21036 0.82495 0.89390 0.83464 1.90544 1.46456 1.30338 1.81746 1.42049 1.55665 1.19352 1.06522 1.18970 1.38184 1.00462 0.87970 0.93067 1.26157 0.98152 1.02849 0.94463 1.69819 1.48157 1.37597 1.02224 0.85341 0.79112 0.77166 0.79738 1.18249 1.20018 1.15114 1.21823 0.87488 0.98178 0.97984 1.21831 1.00190 0.99366 0.94027 0.91601 0.93081 0.93643 0.90904 0.90523 0.92725 0.93825 0.90800 0.89325 0.94388 0.75096 0.91729 0.92979 0.90749 0.90218 0.87228 0.88341 0.92961 0.85645 0.90684 0.77516 0.91195 0.94960 0.94249 0.92205 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.91 71.98 0.71 -1.28 16 2 C -0.12 -1.40 5.69 30.59 0.17 -1.23 16 3 C -0.10 -1.68 4.03 30.59 0.12 -1.56 16 4 C -0.10 -1.45 2.72 -11.54 -0.03 -1.48 16 5 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 6 C -0.14 -1.72 8.84 71.98 0.64 -1.08 16 7 C 0.51 10.75 6.58 87.66 0.58 11.33 16 8 O -0.58 -17.51 12.14 -3.04 -0.04 -17.54 16 9 N -0.71 -11.76 4.06 -422.57 -1.72 -13.47 16 10 C 0.18 3.73 0.66 3.68 0.00 3.73 16 11 C -0.15 -3.18 8.41 71.98 0.61 -2.57 16 12 C -0.11 -1.73 4.92 30.65 0.15 -1.58 16 13 C 0.05 0.93 5.31 86.31 0.46 1.39 16 14 N -0.54 -15.72 4.35 -900.69 -3.92 -19.64 16 15 C 0.06 1.71 5.45 85.56 0.47 2.17 16 16 C 0.45 20.62 7.31 87.66 0.64 21.27 16 17 O -0.61 -34.70 14.29 -3.04 -0.04 -34.74 16 18 N -0.59 -28.36 5.09 -306.99 -1.56 -29.92 16 19 C -0.33 -19.49 10.16 84.04 0.85 -18.64 16 20 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 21 C -0.02 -1.02 5.50 84.92 0.47 -0.55 16 22 N -0.94 -57.45 13.96 21.66 0.30 -57.14 16 23 Si 0.97 38.92 27.74 68.60 1.90 40.82 16 24 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 25 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 26 H -0.23 -7.59 6.52 99.48 0.65 -6.95 16 27 C 0.07 2.44 4.97 86.32 0.43 2.87 16 28 C -0.12 -3.53 4.72 30.64 0.14 -3.39 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.75 6.57 -2.39 -0.02 0.73 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 1.09 7.96 -2.39 -0.02 1.07 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.65 7.56 -2.39 -0.02 0.63 16 37 H 0.09 0.75 6.57 -2.39 -0.02 0.73 16 38 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.41 4.12 6.89 -92.71 -0.64 3.48 16 40 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.05 1.36 6.16 -2.39 -0.01 1.35 16 42 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.10 1.39 8.01 -2.38 -0.02 1.37 16 46 H 0.05 0.68 7.02 -2.39 -0.02 0.67 16 47 H 0.13 2.98 7.98 -2.39 -0.02 2.96 16 48 H 0.08 1.87 8.12 -2.39 -0.02 1.85 16 49 H 0.39 15.22 5.76 -92.71 -0.53 14.68 16 50 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 51 H 0.03 0.97 7.69 -2.38 -0.02 0.95 16 52 H 0.04 1.74 6.06 -2.39 -0.01 1.73 16 53 H 0.06 2.12 6.15 -2.38 -0.01 2.10 16 54 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -84.87 409.41 1.00 -83.87 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: -0.34 Total: 38.38 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 6.41 Total: 9.40 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -6.89 Total: -120.18 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -0.08 Total: -52.29 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 1.90 Total: 40.82 kcal Total: -84.87 1.00 -83.87 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483963151.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.608 kcal (2) G-P(sol) polarization free energy of solvation -84.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds