Wall clock time and date at job start Sat Apr 11 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46660 * 2 1 4 4 C 1.53000 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47143 * 54.99744 * 4 3 2 6 6 C 1.53004 * 109.46958 * 294.99866 * 4 3 2 7 7 C 1.50697 * 109.47599 * 175.00212 * 4 3 2 8 8 O 1.21286 * 119.99808 * 15.67517 * 7 4 3 9 9 N 1.34776 * 120.00350 * 195.68939 * 7 4 3 10 10 C 1.46922 * 120.63193 * 4.42518 * 9 7 4 11 11 C 1.53190 * 108.77751 * 233.63686 * 10 9 7 12 12 C 1.53035 * 109.31507 * 305.36527 * 11 10 9 13 13 C 1.53045 * 109.53806 * 61.36453 * 12 11 10 14 14 C 1.46923 * 120.63051 * 184.45731 * 9 7 4 15 15 H 1.09005 * 109.58860 * 246.15206 * 14 9 7 16 16 C 1.53006 * 109.70703 * 6.50620 * 14 9 7 17 17 N 1.46898 * 109.47334 * 178.49568 * 16 14 9 18 18 C 1.46900 * 111.00093 * 186.15881 * 17 16 14 19 19 C 1.50694 * 109.47174 * 179.97438 * 18 17 16 20 20 O 1.21293 * 120.00415 * 0.02562 * 19 18 17 21 21 N 1.34783 * 119.99753 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99482 * 180.02562 * 21 19 18 23 23 H 1.08003 * 120.00756 * 0.02562 * 22 21 19 24 24 C 1.38956 * 119.99696 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99726 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99921 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46923 * 60.00527 * 26 24 22 28 28 H 1.48504 * 109.46698 * 180.02562 * 26 24 22 29 29 H 1.48491 * 109.47288 * 300.00252 * 26 24 22 30 30 H 1.08991 * 109.47518 * 60.00296 * 1 2 3 31 31 H 1.09003 * 109.46536 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47237 * 299.99490 * 1 2 3 33 33 H 1.08994 * 109.47237 * 240.00509 * 2 1 3 34 34 H 1.08991 * 109.47518 * 119.99703 * 2 1 3 35 35 H 1.09004 * 109.47395 * 60.00455 * 3 2 1 36 36 H 1.09002 * 109.47341 * 300.00091 * 3 2 1 37 37 H 1.08993 * 109.47190 * 305.79719 * 6 4 3 38 38 H 1.08996 * 109.46860 * 65.80306 * 6 4 3 39 39 H 1.09004 * 109.47037 * 185.79646 * 6 4 3 40 40 H 1.08997 * 109.58746 * 113.84460 * 10 9 7 41 41 H 1.09002 * 109.58328 * 353.42762 * 10 9 7 42 42 H 1.09000 * 109.49709 * 185.40849 * 11 10 9 43 43 H 1.09002 * 109.52290 * 65.33207 * 11 10 9 44 44 H 1.09005 * 109.45798 * 301.34550 * 12 11 10 45 45 H 1.09002 * 109.45159 * 181.37965 * 12 11 10 46 46 H 1.09005 * 109.49670 * 178.68863 * 13 12 11 47 47 H 1.08990 * 109.52129 * 58.60195 * 13 12 11 48 48 H 1.09008 * 109.46507 * 298.49606 * 16 14 9 49 49 H 1.08996 * 109.46917 * 58.49025 * 16 14 9 50 50 H 1.00902 * 110.99955 * 62.21028 * 17 16 14 51 51 H 1.09002 * 109.47068 * 300.00452 * 18 17 16 52 52 H 1.09000 * 109.46552 * 59.99857 * 18 17 16 53 53 H 0.96998 * 120.00051 * 0.02562 * 21 19 18 54 54 H 0.97006 * 119.99471 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 -0.0006 5 1 3.9329 0.8533 -0.8427 6 6 4.0805 0.8329 1.3065 7 6 4.0722 2.8581 -0.1244 8 8 3.3209 3.7881 0.0796 9 7 5.3561 3.0905 -0.4621 10 6 6.2525 1.9786 -0.8067 11 6 7.5070 2.0673 0.0680 12 6 8.1362 3.4535 -0.0883 13 6 7.1446 4.5214 0.3795 14 6 5.8861 4.4605 -0.4918 15 1 6.1377 4.7328 -1.5169 16 6 4.8371 5.4314 0.0539 17 7 5.3851 6.7944 0.0555 18 6 4.4617 7.7324 0.7076 19 6 5.0568 9.1167 0.6906 20 8 6.1432 9.3038 0.1846 21 7 4.3819 10.1472 1.2378 22 6 4.9231 11.4066 1.2218 23 1 5.8901 11.5733 0.7706 24 6 4.2271 12.4691 1.7854 25 7 3.0504 12.2664 2.3341 26 14 4.9649 14.1851 1.7644 27 1 5.1910 14.6095 0.3594 28 1 4.0316 15.1332 2.4242 29 1 6.2586 14.1768 2.4933 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5137 0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.6765 1.9564 -0.8900 37 1 3.6352 1.3587 2.1510 38 1 3.8045 -0.2207 1.3479 39 1 5.1656 0.9263 1.3515 40 1 6.5340 2.0484 -1.8574 41 1 5.7460 1.0309 -0.6242 42 1 8.2221 1.3059 -0.2433 43 1 7.2356 1.9066 1.1114 44 1 8.3852 3.6232 -1.1359 45 1 9.0427 3.5108 0.5143 46 1 7.6020 5.5068 0.2896 47 1 6.8761 4.3383 1.4198 48 1 3.9483 5.3979 -0.5763 49 1 4.5718 5.1453 1.0717 50 1 5.6054 7.0966 -0.8817 51 1 3.5119 7.7382 0.1728 52 1 4.2960 7.4211 1.7390 53 1 3.5133 9.9976 1.6428 54 1 2.5647 13.0081 2.7279 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484615191.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:56 Heat of formation + Delta-G solvation = -104.567777 kcal Electronic energy + Delta-G solvation = -30527.743344 eV Core-core repulsion = 26497.965349 eV Total energy + Delta-G solvation = -4029.777996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.78742 -40.16921 -38.68895 -37.21480 -36.55946 -35.82811 -34.01512 -33.33889 -32.99360 -31.97154 -29.02134 -27.56003 -27.20305 -25.97242 -25.03597 -24.33336 -22.79011 -21.97596 -21.30289 -21.08823 -19.97104 -19.53206 -18.34204 -17.59171 -17.22717 -16.80951 -16.55997 -16.34874 -16.16126 -15.95457 -15.46367 -15.31270 -15.23885 -15.17089 -14.87200 -14.55474 -14.33153 -14.25252 -13.95011 -13.63959 -13.51048 -13.36074 -13.33065 -13.12126 -12.98244 -12.93277 -12.75744 -12.65150 -12.45361 -12.14570 -12.13064 -11.98215 -11.89293 -11.82521 -11.72587 -11.55742 -11.52297 -11.39687 -11.36039 -10.45162 -10.31751 -10.04794 -9.58594 -9.15971 -8.48233 -5.97998 1.38786 1.39977 1.52028 1.63984 1.92420 2.00725 2.28236 2.92555 3.17975 3.43387 3.59520 3.76602 3.82183 3.89144 3.99119 4.00086 4.10921 4.25917 4.27175 4.30459 4.32807 4.37063 4.38574 4.45128 4.51385 4.56378 4.63472 4.69553 4.75598 4.80349 4.87967 4.92636 4.94158 5.01500 5.02297 5.04202 5.11541 5.15285 5.23182 5.24991 5.30248 5.32326 5.38259 5.43791 5.50445 5.51915 5.64192 5.83638 6.03815 6.35715 6.48656 6.56655 7.08938 7.23876 7.51819 8.06438 8.69238 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013553 B = 0.002272 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.524357 B =12323.098736 C =14063.494488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.099 4.099 4 C -0.103 4.103 5 H 0.120 0.880 6 C -0.141 4.141 7 C 0.505 3.495 8 O -0.576 6.576 9 N -0.605 5.605 10 C 0.099 3.901 11 C -0.130 4.130 12 C -0.120 4.120 13 C -0.115 4.115 14 C 0.154 3.846 15 H 0.073 0.927 16 C 0.082 3.918 17 N -0.678 5.678 18 C 0.072 3.928 19 C 0.441 3.559 20 O -0.618 6.618 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.081 0.919 24 C -0.016 4.016 25 N -0.922 5.922 26 Si 0.998 3.002 27 H -0.270 1.270 28 H -0.270 1.270 29 H -0.270 1.270 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.043 0.957 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.048 0.952 48 H 0.045 0.955 49 H 0.058 0.942 50 H 0.342 0.658 51 H 0.055 0.945 52 H 0.093 0.907 53 H 0.395 0.605 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 -32.185 -5.428 32.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.137 4.137 4 C -0.124 4.124 5 H 0.138 0.862 6 C -0.198 4.198 7 C 0.295 3.705 8 O -0.455 6.455 9 N -0.338 5.338 10 C -0.022 4.022 11 C -0.168 4.168 12 C -0.157 4.157 13 C -0.153 4.153 14 C 0.050 3.950 15 H 0.091 0.909 16 C -0.046 4.046 17 N -0.312 5.312 18 C -0.061 4.061 19 C 0.228 3.772 20 O -0.505 6.505 21 N -0.210 5.210 22 C -0.465 4.465 23 H 0.099 0.901 24 C -0.215 4.215 25 N -0.563 5.563 26 Si 0.821 3.179 27 H -0.195 1.195 28 H -0.194 1.194 29 H -0.196 1.196 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.131 0.869 42 H 0.120 0.880 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.076 0.924 50 H 0.160 0.840 51 H 0.073 0.927 52 H 0.111 0.889 53 H 0.229 0.771 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.542 -31.570 -4.994 32.064 hybrid contribution -1.080 1.551 -0.233 1.904 sum 1.462 -30.019 -5.228 30.506 Atomic orbital electron populations 1.21793 0.96149 1.02057 1.01379 1.21550 0.95714 0.94996 1.03229 1.21412 0.92844 0.97882 1.01592 1.21404 0.97153 0.91559 1.02256 0.86199 1.21847 1.01662 1.02157 0.94177 1.21471 0.81323 0.92591 0.75143 1.90737 1.57094 1.45940 1.51743 1.48313 1.10453 1.07427 1.67606 1.22145 0.90741 0.89298 0.99998 1.21926 0.97027 0.97440 1.00368 1.21555 0.97837 0.94372 1.01943 1.21755 0.94938 1.00218 0.98413 1.21078 0.93546 0.81001 0.99362 0.90945 1.22357 0.94733 0.86408 1.01091 1.60055 1.44453 1.01760 1.24957 1.21382 0.94055 0.89425 1.01217 1.20698 0.86541 0.87082 0.82844 1.90467 1.23473 1.85559 1.50981 1.41943 1.19968 1.07097 1.52005 1.19677 1.04358 0.84911 1.37538 0.90053 1.26140 0.95993 1.03772 0.95629 1.69690 1.13628 1.34624 1.38365 0.84925 0.77997 0.76251 0.78759 1.19504 1.19416 1.19558 0.93359 0.91525 0.93517 0.90573 0.90528 0.93310 0.93312 0.93803 0.88747 0.91169 0.89934 0.86888 0.87975 0.91845 0.91224 0.91232 0.91554 0.93332 0.93693 0.92358 0.84010 0.92724 0.88917 0.77138 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.23 5.69 30.59 0.17 -1.06 16 3 C -0.10 -1.62 4.01 30.59 0.12 -1.49 16 4 C -0.10 -1.41 1.86 -11.54 -0.02 -1.43 16 5 H 0.12 0.96 6.85 -2.39 -0.02 0.94 16 6 C -0.14 -1.49 8.44 71.98 0.61 -0.88 16 7 C 0.50 11.24 6.76 87.66 0.59 11.83 16 8 O -0.58 -18.15 11.63 -3.05 -0.04 -18.18 16 9 N -0.60 -11.55 2.97 -795.03 -2.36 -13.92 16 10 C 0.10 1.01 5.62 86.36 0.49 1.50 16 11 C -0.13 -1.30 6.08 30.67 0.19 -1.11 16 12 C -0.12 -1.85 5.88 30.62 0.18 -1.67 16 13 C -0.11 -2.70 5.12 30.67 0.16 -2.54 16 14 C 0.15 3.78 3.19 44.98 0.14 3.92 16 15 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 16 C 0.08 2.63 3.56 86.31 0.31 2.94 16 17 N -0.68 -25.03 5.41 -517.93 -2.80 -27.84 16 18 C 0.07 2.94 6.15 85.55 0.53 3.46 16 19 C 0.44 22.79 7.82 87.65 0.69 23.47 16 20 O -0.62 -36.00 15.78 -3.07 -0.05 -36.05 16 21 N -0.57 -31.53 5.29 -306.98 -1.62 -33.15 16 22 C -0.34 -19.90 9.68 84.04 0.81 -19.09 16 23 H 0.08 5.07 7.16 -2.91 -0.02 5.05 16 24 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 25 N -0.92 -51.97 13.05 21.66 0.28 -51.69 16 26 Si 1.00 44.29 29.55 68.60 2.03 46.32 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 29 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 0.63 6.70 -2.39 -0.02 0.62 16 35 H 0.05 1.02 8.08 -2.39 -0.02 1.00 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.09 0.54 6.86 -2.39 -0.02 0.52 16 39 H 0.07 0.64 6.46 -2.39 -0.02 0.62 16 40 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.11 0.58 4.87 -2.39 -0.01 0.57 16 42 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.06 0.72 7.78 -2.39 -0.02 0.70 16 44 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.07 1.91 7.77 -2.38 -0.02 1.89 16 47 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.05 1.59 6.26 -2.38 -0.01 1.58 16 49 H 0.06 2.07 7.21 -2.39 -0.02 2.05 16 50 H 0.34 12.81 8.49 -89.69 -0.76 12.05 16 51 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 52 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 53 H 0.40 20.91 7.90 -92.71 -0.73 20.18 16 54 H 0.28 14.64 8.31 -92.70 -0.77 13.87 16 Total: -1.00 -74.49 414.95 0.98 -73.51 By element: Atomic # 1 Polarization: 45.30 SS G_CDS: -0.60 Total: 44.70 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 6.14 Total: 16.31 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -6.50 Total: -126.59 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -0.08 Total: -54.24 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -74.49 0.98 -73.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484615191.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.061 kcal (2) G-P(sol) polarization free energy of solvation -74.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds