Wall clock time and date at job start Sat Apr 11 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46938 * 2 1 4 4 C 1.52995 * 109.47093 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.47182 * 56.46938 * 4 3 2 6 6 O 1.42902 * 109.47020 * 296.47000 * 4 3 2 7 7 C 1.42911 * 113.99747 * 149.99693 * 6 4 3 8 8 C 1.50700 * 109.47328 * 176.46822 * 4 3 2 9 9 O 1.21280 * 120.00017 * 107.85924 * 8 4 3 10 10 N 1.34773 * 119.99893 * 287.86072 * 8 4 3 11 11 C 1.47022 * 125.65139 * 4.47251 * 10 8 4 12 12 C 1.54316 * 107.27637 * 180.96445 * 11 10 8 13 13 C 1.55161 * 102.86016 * 22.52579 * 12 11 10 14 14 H 1.08994 * 111.03854 * 82.39452 * 13 12 11 15 15 N 1.46904 * 110.99968 * 206.22565 * 13 12 11 16 16 C 1.46902 * 111.00264 * 297.52035 * 15 13 12 17 17 C 1.53232 * 109.33823 * 172.74591 * 16 15 13 18 18 N 1.47081 * 108.52134 * 53.83007 * 17 16 15 19 19 C 1.36938 * 120.88173 * 128.79023 * 18 17 16 20 20 H 1.07997 * 120.00168 * 207.82036 * 19 18 17 21 21 C 1.38814 * 119.99899 * 27.82009 * 19 18 17 22 22 N 1.31620 * 119.99981 * 15.49125 * 21 19 18 23 23 Si 1.86802 * 120.00137 * 195.48708 * 21 19 18 24 24 H 1.48496 * 109.47114 * 89.99832 * 23 21 19 25 25 H 1.48499 * 109.47331 * 210.00259 * 23 21 19 26 26 H 1.48497 * 109.47172 * 330.00132 * 23 21 19 27 27 C 1.47076 * 118.23868 * 308.81402 * 18 17 16 28 28 C 1.46897 * 110.99639 * 173.21787 * 15 13 12 29 29 C 1.47424 * 125.64495 * 184.77158 * 10 8 4 30 30 H 1.08991 * 109.47302 * 60.00257 * 1 2 3 31 31 H 1.09006 * 109.46871 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47278 * 299.99784 * 1 2 3 33 33 H 1.09002 * 109.46984 * 239.99791 * 2 1 3 34 34 H 1.09000 * 109.46754 * 119.99892 * 2 1 3 35 35 H 1.08998 * 109.46960 * 60.00021 * 3 2 1 36 36 H 1.09004 * 109.46728 * 299.99971 * 3 2 1 37 37 H 1.08998 * 109.46616 * 179.97438 * 7 6 4 38 38 H 1.08994 * 109.47092 * 299.99964 * 7 6 4 39 39 H 1.09002 * 109.46490 * 60.00570 * 7 6 4 40 40 H 1.08994 * 109.87807 * 300.51229 * 11 10 8 41 41 H 1.09006 * 109.88033 * 61.67457 * 11 10 8 42 42 H 1.08997 * 110.92434 * 264.10892 * 12 11 10 43 43 H 1.08999 * 110.58915 * 140.78399 * 12 11 10 44 44 H 1.09002 * 109.48942 * 292.70799 * 16 15 13 45 45 H 1.09000 * 109.49026 * 52.78525 * 16 15 13 46 46 H 1.08994 * 109.63312 * 294.11771 * 17 16 15 47 47 H 1.09004 * 109.62638 * 173.53850 * 17 16 15 48 48 H 0.97004 * 119.99607 * 180.02562 * 22 21 19 49 49 H 1.09004 * 109.62410 * 291.47568 * 27 18 17 50 50 H 1.09001 * 109.63175 * 170.89671 * 27 18 17 51 51 H 1.09002 * 109.49439 * 307.21214 * 28 15 13 52 52 H 1.08989 * 109.49673 * 67.26802 * 28 15 13 53 53 H 1.08997 * 110.37412 * 274.67964 * 29 10 8 54 54 H 1.09003 * 110.36511 * 37.00361 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9330 0.8750 -0.8576 6 8 4.0468 0.8419 1.2051 7 6 5.3065 0.1812 1.0667 8 6 4.0723 2.8607 -0.0882 9 8 4.5785 3.3856 0.8809 10 7 3.9589 3.5456 -1.2433 11 6 3.2870 3.0677 -2.4606 12 6 3.4293 4.1739 -3.5270 13 6 4.6666 4.9706 -3.0352 14 1 5.5924 4.4881 -3.3481 15 7 4.6169 6.3621 -3.5036 16 6 4.6541 6.4254 -4.9707 17 6 4.4188 7.8706 -5.4224 18 7 5.3893 8.7381 -4.7376 19 6 6.1633 9.6206 -5.4428 20 1 7.1319 9.9116 -5.0642 21 6 5.7027 10.1413 -6.6444 22 7 4.4289 10.0406 -6.9601 23 14 6.8907 10.9850 -7.8133 24 1 7.4581 9.9830 -8.7509 25 1 6.1695 12.0304 -8.5829 26 1 7.9890 11.6124 -7.0352 27 6 5.5070 8.6321 -3.2754 28 6 5.6995 7.1568 -2.9082 29 6 4.4935 4.8958 -1.4976 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 5.5990 -0.2477 2.0251 38 1 5.2210 -0.6120 0.3241 39 1 6.0603 0.9001 0.7455 40 1 3.7609 2.1504 -2.8096 41 1 2.2318 2.8872 -2.2550 42 1 2.5445 4.8100 -3.5486 43 1 3.6164 3.7383 -4.5085 44 1 5.6282 6.0877 -5.3247 45 1 3.8747 5.7842 -5.3823 46 1 3.4059 8.1760 -5.1600 47 1 4.5587 7.9446 -6.5009 48 1 4.1072 10.4041 -7.7999 49 1 4.5986 9.0106 -2.8067 50 1 6.3663 9.2094 -2.9343 51 1 5.6781 7.0461 -1.8241 52 1 6.6589 6.8087 -3.2905 53 1 3.7876 5.6536 -1.1579 54 1 5.4555 5.0226 -1.0010 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484702172.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:02 Heat of formation + Delta-G solvation = -68.923700 kcal Electronic energy + Delta-G solvation = -30929.219732 eV Core-core repulsion = 26900.987379 eV Total energy + Delta-G solvation = -4028.232352 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.56053 -40.12501 -38.75714 -37.91408 -36.00007 -35.54521 -33.44364 -31.91333 -31.83131 -30.80931 -29.56021 -27.82396 -27.25309 -25.88656 -24.71963 -24.48398 -23.29416 -22.06742 -21.62520 -20.82542 -20.45308 -18.83932 -18.59821 -17.85261 -17.52470 -16.87456 -16.56788 -16.49173 -15.86853 -15.77046 -15.59391 -15.48658 -15.26608 -15.14860 -14.87372 -14.76817 -14.61236 -14.24621 -13.92940 -13.88990 -13.70122 -13.31755 -13.17295 -13.01130 -12.98258 -12.69825 -12.55764 -12.53791 -12.38247 -12.18099 -12.05505 -12.02783 -11.95867 -11.88359 -11.82333 -11.57041 -11.45150 -11.41244 -11.36271 -10.59529 -10.37586 -9.75226 -9.33233 -8.67424 -7.88044 -5.34309 1.43484 1.46744 1.47205 1.56564 1.72759 2.50003 2.72938 2.94633 3.24238 3.27414 3.60592 3.64703 3.68755 3.83570 3.85330 4.06103 4.13371 4.22382 4.26475 4.31239 4.31894 4.37220 4.43150 4.48537 4.52653 4.56468 4.60326 4.67873 4.68623 4.71979 4.78534 4.81084 4.86961 4.87781 4.97410 4.99058 5.01504 5.05252 5.15775 5.18517 5.25051 5.28820 5.36936 5.37419 5.51532 5.60922 5.70672 5.97828 6.12240 6.23084 6.37742 6.42742 7.02328 7.13751 7.83132 8.37558 9.18504 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024681 B = 0.002156 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.192668 B =12983.783475 C =13609.310333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.113 4.113 4 C 0.085 3.915 5 H 0.115 0.885 6 O -0.379 6.379 7 C 0.024 3.976 8 C 0.498 3.502 9 O -0.580 6.580 10 N -0.613 5.613 11 C 0.097 3.903 12 C -0.118 4.118 13 C 0.072 3.928 14 H 0.054 0.946 15 N -0.527 5.527 16 C 0.055 3.945 17 C 0.185 3.815 18 N -0.615 5.615 19 C -0.265 4.265 20 H 0.064 0.936 21 C -0.049 4.049 22 N -0.934 5.934 23 Si 0.969 3.031 24 H -0.283 1.283 25 H -0.294 1.294 26 H -0.272 1.272 27 C 0.145 3.855 28 C 0.054 3.946 29 C 0.119 3.881 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.027 0.973 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.019 0.981 45 H 0.093 0.907 46 H 0.000 1.000 47 H 0.058 0.942 48 H 0.251 0.749 49 H 0.016 0.984 50 H 0.057 0.943 51 H 0.083 0.917 52 H 0.024 0.976 53 H 0.067 0.933 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.193 -25.648 9.508 27.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.150 4.150 4 C 0.024 3.976 5 H 0.133 0.867 6 O -0.297 6.297 7 C -0.072 4.072 8 C 0.287 3.713 9 O -0.459 6.459 10 N -0.349 5.349 11 C -0.025 4.025 12 C -0.156 4.156 13 C -0.037 4.037 14 H 0.071 0.929 15 N -0.252 5.252 16 C -0.074 4.074 17 C 0.059 3.941 18 N -0.339 5.339 19 C -0.395 4.395 20 H 0.082 0.918 21 C -0.245 4.245 22 N -0.580 5.580 23 Si 0.797 3.203 24 H -0.210 1.210 25 H -0.220 1.220 26 H -0.196 1.196 27 C 0.020 3.980 28 C -0.075 4.075 29 C -0.004 4.004 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.046 0.954 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.104 0.896 43 H 0.121 0.879 44 H 0.037 0.963 45 H 0.111 0.889 46 H 0.018 0.982 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.034 0.966 50 H 0.075 0.925 51 H 0.101 0.899 52 H 0.042 0.958 53 H 0.085 0.915 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.530 -25.151 10.306 27.737 hybrid contribution 1.640 0.996 -0.951 2.141 sum -3.891 -24.154 9.355 26.193 Atomic orbital electron populations 1.21775 0.95051 1.02272 1.01978 1.21433 0.96324 0.94404 1.02998 1.21784 0.89507 1.00009 1.03727 1.22210 0.97187 0.88128 0.90091 0.86724 1.87980 1.37672 1.71371 1.32652 1.23029 0.84102 0.95910 1.04197 1.21859 0.78631 0.89866 0.80937 1.90695 1.46756 1.71333 1.37146 1.48602 1.55853 1.17245 1.13168 1.22474 0.98962 0.98286 0.82767 1.22727 0.97613 0.96121 0.99107 1.22744 0.98751 0.88894 0.93360 0.92861 1.61925 1.45935 1.09432 1.07955 1.22580 0.99485 0.98613 0.86685 1.20652 0.90280 0.86679 0.96478 1.44405 1.45113 1.42825 1.01559 1.19497 0.97015 1.19461 1.03495 0.91834 1.25812 0.96933 0.99911 1.01847 1.70170 1.13603 1.50254 1.23937 0.85247 0.78387 0.77733 0.78934 1.20989 1.22042 1.19641 1.21087 0.98278 0.94155 0.84522 1.22447 0.91615 0.94558 0.98868 1.22043 0.98710 0.84435 0.95211 0.91880 0.91841 0.93481 0.90134 0.92070 0.92439 0.88147 0.88238 0.91069 0.95395 0.88358 0.88498 0.89641 0.87934 0.96258 0.88885 0.98159 0.92373 0.93982 0.96638 0.92492 0.89860 0.95814 0.91514 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 71.98 0.71 -0.68 16 2 C -0.11 -1.13 5.82 30.60 0.18 -0.95 16 3 C -0.11 -1.52 4.84 30.59 0.15 -1.37 16 4 C 0.09 1.45 1.93 29.85 0.06 1.50 16 5 H 0.12 1.21 7.50 -2.38 -0.02 1.19 16 6 O -0.38 -7.93 9.39 -130.23 -1.22 -9.15 16 7 C 0.02 0.35 10.81 113.37 1.23 1.58 16 8 C 0.50 12.41 7.13 87.66 0.62 13.03 16 9 O -0.58 -20.51 16.84 15.72 0.26 -20.24 16 10 N -0.61 -13.08 3.33 -811.82 -2.70 -15.78 16 11 C 0.10 1.25 6.05 86.73 0.52 1.78 16 12 C -0.12 -1.99 5.37 31.78 0.17 -1.82 16 13 C 0.07 1.74 2.71 46.31 0.13 1.86 16 14 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 15 N -0.53 -16.95 4.53 -861.92 -3.90 -20.85 16 16 C 0.06 1.97 5.49 86.38 0.47 2.44 16 17 C 0.18 8.83 5.40 86.35 0.47 9.29 16 18 N -0.61 -31.39 3.03 -698.14 -2.12 -33.51 16 19 C -0.26 -14.70 9.63 84.03 0.81 -13.89 16 20 H 0.06 3.47 7.88 -2.91 -0.02 3.44 16 21 C -0.05 -2.77 4.96 84.86 0.42 -2.34 16 22 N -0.93 -54.92 11.15 21.65 0.24 -54.68 16 23 Si 0.97 44.78 29.58 68.60 2.03 46.81 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 27 C 0.15 6.24 6.69 86.35 0.58 6.82 16 28 C 0.05 1.89 5.47 86.38 0.47 2.37 16 29 C 0.12 3.06 5.28 86.86 0.46 3.52 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.75 7.78 -2.39 -0.02 0.73 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.10 0.99 5.50 -2.38 -0.01 0.98 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 39 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.10 0.76 7.95 -2.39 -0.02 0.74 16 41 H 0.10 0.88 6.02 -2.38 -0.01 0.87 16 42 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.10 1.37 7.94 -2.39 -0.02 1.35 16 44 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.09 2.74 6.89 -2.39 -0.02 2.73 16 46 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 47 H 0.06 3.11 6.16 -2.38 -0.01 3.09 16 48 H 0.25 14.25 8.31 -92.71 -0.77 13.47 16 49 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 50 H 0.06 2.38 7.95 -2.39 -0.02 2.36 16 51 H 0.08 2.56 6.78 -2.39 -0.02 2.55 16 52 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 53 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 54 H 0.06 1.67 7.79 -2.39 -0.02 1.65 16 Total: -1.00 -74.11 413.16 0.89 -73.22 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.85 Total: 11.03 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 7.45 Total: 23.14 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -8.48 Total: -124.81 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.96 Total: -29.39 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -74.11 0.89 -73.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484702172.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.296 kcal (2) G-P(sol) polarization free energy of solvation -74.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds