Wall clock time and date at job start Sat Apr 11 2020 05:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47334 * 2 1 4 4 C 1.53008 * 109.47047 * 119.99567 * 2 1 3 5 5 H 1.09003 * 109.46803 * 60.00269 * 4 2 1 6 6 C 1.52994 * 109.47145 * 300.00359 * 4 2 1 7 7 C 1.52999 * 109.47299 * 175.00002 * 6 4 2 8 8 N 1.46498 * 109.47070 * 180.02562 * 7 6 4 9 9 C 1.46506 * 120.00239 * 90.00054 * 8 7 6 10 10 C 1.34777 * 119.99828 * 269.71859 * 8 7 6 11 11 O 1.21283 * 120.00222 * 0.28168 * 10 8 7 12 12 C 1.50699 * 119.99772 * 180.27730 * 10 8 7 13 13 C 1.53779 * 113.61642 * 279.13550 * 12 10 8 14 14 C 1.53953 * 87.02241 * 220.05260 * 13 12 10 15 15 C 1.53778 * 87.11043 * 25.36334 * 14 13 12 16 16 N 1.46900 * 109.47195 * 180.02562 * 4 2 1 17 17 C 1.46901 * 110.99939 * 275.00064 * 16 4 2 18 18 C 1.50693 * 109.47319 * 180.02562 * 17 16 4 19 19 O 1.21294 * 119.99842 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00299 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00210 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00359 * 0.02562 * 21 20 18 23 23 C 1.38956 * 120.00238 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99956 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47256 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47216 * 119.99769 * 25 23 21 28 28 H 1.48499 * 109.46753 * 239.99764 * 25 23 21 29 29 H 1.09003 * 109.47099 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47488 * 300.00288 * 1 2 3 31 31 H 1.09003 * 109.47097 * 60.00503 * 1 2 3 32 32 H 1.08994 * 109.47488 * 239.99712 * 2 1 3 33 33 H 1.09001 * 109.47809 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.46618 * 299.99791 * 3 2 1 35 35 H 1.09003 * 109.47279 * 59.99609 * 3 2 1 36 36 H 1.09002 * 109.47518 * 54.99658 * 6 4 2 37 37 H 1.09001 * 109.47089 * 295.00329 * 6 4 2 38 38 H 1.08993 * 109.47367 * 59.99390 * 7 6 4 39 39 H 1.09001 * 109.46864 * 299.99564 * 7 6 4 40 40 H 1.08999 * 109.46892 * 269.72399 * 9 8 7 41 41 H 1.09000 * 109.46803 * 29.71572 * 9 8 7 42 42 H 1.09000 * 109.47214 * 149.72366 * 9 8 7 43 43 H 1.08996 * 112.85143 * 50.33810 * 12 10 8 44 44 H 1.08999 * 113.61449 * 334.57065 * 13 12 10 45 45 H 1.08999 * 113.61435 * 105.47321 * 13 12 10 46 46 H 1.08997 * 113.53469 * 270.81070 * 14 13 12 47 47 H 1.09002 * 113.66772 * 139.93851 * 14 13 12 48 48 H 1.09003 * 113.61058 * 220.09037 * 15 14 13 49 49 H 1.09000 * 113.68969 * 89.19827 * 15 14 13 50 50 H 1.00891 * 110.99796 * 151.04910 * 16 4 2 51 51 H 1.09007 * 109.47165 * 300.00398 * 17 16 4 52 52 H 1.09001 * 109.47286 * 59.99847 * 17 16 4 53 53 H 0.97003 * 120.00456 * 0.02562 * 20 18 17 54 54 H 0.96999 * 120.00132 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6766 -1.7489 1.2494 6 6 1.5299 0.0001 2.4985 7 6 1.9346 -0.7900 3.7446 8 7 1.4456 -0.0996 4.9407 9 6 0.1173 -0.4109 5.4746 10 6 2.2201 0.8177 5.5532 11 8 3.3198 1.0754 5.1112 12 6 1.7196 1.5234 6.7871 13 6 0.7703 2.6947 6.4846 14 6 1.4836 3.4596 7.6143 15 6 2.7047 2.5651 7.3432 16 7 3.5089 -0.7207 1.2497 17 6 4.0359 -1.8439 0.4631 18 6 5.5423 -1.8108 0.4870 19 8 6.1201 -0.9372 1.0987 20 7 6.2476 -2.7519 -0.1713 21 6 7.6180 -2.7215 -0.1500 22 1 8.1325 -1.9437 0.3947 23 6 8.3452 -3.6915 -0.8292 24 7 7.7192 -4.6382 -1.4915 25 14 10.2125 -3.6504 -0.7995 26 1 10.6694 -2.4930 0.0108 27 1 10.7258 -4.9083 -0.2001 28 1 10.7267 -3.5171 -2.1862 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9562 -0.8901 35 1 1.6766 1.9564 0.8900 36 1 0.4435 0.0783 2.4548 37 1 1.9644 0.9987 2.5443 38 1 3.0208 -0.8683 3.7883 39 1 1.4999 -1.7885 3.6988 40 1 -0.6210 0.2493 5.0195 41 1 -0.1323 -1.4471 5.2464 42 1 0.1170 -0.2663 6.5550 43 1 1.3384 0.8362 7.5424 44 1 0.9192 3.1339 5.4982 45 1 -0.2759 2.4750 6.6977 46 1 1.0367 3.3026 8.5959 47 1 1.6549 4.5124 7.3896 48 1 3.2181 2.2410 8.2485 49 1 3.3845 2.9677 6.5923 50 1 3.8702 -0.7379 2.1915 51 1 3.6866 -2.7832 0.8918 52 1 3.6866 -1.7621 -0.5662 53 1 5.7856 -3.4503 -0.6609 54 1 8.2267 -5.3151 -1.9659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485428364.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:27 Heat of formation + Delta-G solvation = -84.628890 kcal Electronic energy + Delta-G solvation = -30581.308880 eV Core-core repulsion = 26552.395499 eV Total energy + Delta-G solvation = -4028.913381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.46012 -40.35098 -39.27575 -38.31218 -36.61679 -36.02990 -34.47999 -33.28434 -32.30885 -28.85138 -28.00374 -27.90303 -27.40058 -26.54933 -26.05970 -24.89887 -23.54235 -21.12949 -21.12427 -19.94964 -19.85801 -19.75230 -18.38452 -17.90938 -17.37197 -16.85431 -16.61898 -16.51564 -16.29003 -16.03539 -15.65752 -15.56169 -15.36789 -14.98687 -14.72892 -14.32755 -14.02833 -13.93212 -13.75409 -13.58936 -13.51965 -13.36640 -13.23995 -13.12326 -13.00783 -12.92061 -12.86326 -12.79438 -12.61052 -12.43430 -12.14550 -12.10833 -11.78800 -11.68006 -11.61728 -11.53853 -11.40866 -11.30288 -11.25752 -10.62015 -10.35514 -10.03679 -9.65974 -9.24378 -8.49161 -5.97800 1.33933 1.38714 1.53566 1.62629 2.02768 2.04283 2.27396 2.92866 3.17644 3.46773 3.49628 3.62663 3.70091 3.85782 3.87522 3.91243 3.98592 4.15133 4.27956 4.29790 4.36043 4.38259 4.42273 4.50675 4.52883 4.59617 4.63496 4.65010 4.76604 4.79178 4.85177 4.87630 4.89088 4.95546 4.98380 5.04116 5.08565 5.11617 5.17603 5.19117 5.25228 5.32503 5.38557 5.50018 5.53935 5.58404 5.59747 5.91594 6.17058 6.40798 6.41785 6.58546 7.10739 7.22607 7.53689 8.10461 8.68597 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.002515 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.402688 B =11130.490894 C =12619.396112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 C -0.133 4.133 4 C 0.096 3.904 5 H 0.061 0.939 6 C -0.120 4.120 7 C 0.107 3.893 8 N -0.612 5.612 9 C 0.071 3.929 10 C 0.505 3.495 11 O -0.589 6.589 12 C -0.132 4.132 13 C -0.113 4.113 14 C -0.129 4.129 15 C -0.136 4.136 16 N -0.679 5.679 17 C 0.067 3.933 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.074 0.926 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.277 1.277 27 H -0.268 1.268 28 H -0.268 1.268 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.034 0.966 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.102 0.898 37 H 0.049 0.951 38 H 0.044 0.956 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.142 0.858 44 H 0.064 0.936 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.059 0.941 50 H 0.339 0.661 51 H 0.066 0.934 52 H 0.102 0.898 53 H 0.397 0.603 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.317 7.778 14.620 31.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 C -0.191 4.191 4 C -0.013 4.013 5 H 0.079 0.921 6 C -0.159 4.159 7 C -0.016 4.016 8 N -0.344 5.344 9 C -0.070 4.070 10 C 0.294 3.706 11 O -0.469 6.469 12 C -0.153 4.153 13 C -0.151 4.151 14 C -0.166 4.166 15 C -0.174 4.174 16 N -0.314 5.314 17 C -0.065 4.065 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.463 4.463 22 H 0.092 0.908 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.202 1.202 27 H -0.193 1.193 28 H -0.194 1.194 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.120 0.880 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.159 0.841 44 H 0.083 0.917 45 H 0.124 0.876 46 H 0.126 0.874 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.078 0.922 50 H 0.160 0.840 51 H 0.084 0.916 52 H 0.120 0.880 53 H 0.231 0.769 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.263 8.755 14.179 30.264 hybrid contribution 1.347 -1.194 -0.097 1.802 sum -23.916 7.562 14.082 28.766 Atomic orbital electron populations 1.21843 0.92978 1.02482 1.02416 1.21081 0.96470 0.96011 0.96756 1.21666 1.00506 0.96165 1.00738 1.21632 0.85701 0.98594 0.95417 0.92138 1.22047 1.02413 0.99157 0.92280 1.21550 0.99150 0.96352 0.84554 1.47974 1.18708 1.39889 1.27800 1.22138 0.81382 1.02847 1.00651 1.21384 0.84097 0.79113 0.85963 1.90759 1.23282 1.65133 1.67763 1.22936 1.00257 0.97100 0.94996 1.22805 0.99403 0.93770 0.99086 1.22856 0.95241 0.98796 0.99732 1.22841 0.97098 0.96693 1.00728 1.60105 1.07817 1.44439 1.18998 1.21565 0.90107 0.93847 1.00972 1.20966 0.90803 0.83075 0.82799 1.90517 1.72934 1.39350 1.48336 1.41922 1.06460 1.26430 1.46238 1.19665 0.82638 1.12423 1.31599 0.90794 1.26034 1.04998 0.94701 0.95483 1.69673 1.38109 1.15133 1.33090 0.84879 0.76834 0.78266 0.78393 1.20165 1.19293 1.19352 0.91631 0.91625 0.92171 0.92299 0.94697 0.92808 0.93115 0.87994 0.93263 0.93748 0.88190 0.90868 0.89520 0.89129 0.84067 0.91681 0.87602 0.87399 0.91059 0.90627 0.92221 0.84028 0.91579 0.88018 0.76915 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.85 71.98 0.64 -1.56 16 2 C -0.08 -1.94 2.84 -10.79 -0.03 -1.97 16 3 C -0.13 -3.58 8.68 71.98 0.63 -2.95 16 4 C 0.10 2.38 1.87 44.92 0.08 2.46 16 5 H 0.06 1.29 7.80 -2.39 -0.02 1.27 16 6 C -0.12 -2.65 4.41 30.59 0.13 -2.52 16 7 C 0.11 2.42 5.28 86.38 0.46 2.88 16 8 N -0.61 -11.71 2.87 -846.76 -2.43 -14.14 16 9 C 0.07 0.58 10.23 127.77 1.31 1.89 16 10 C 0.50 12.72 7.20 87.66 0.63 13.36 16 11 O -0.59 -22.35 15.49 -3.04 -0.05 -22.40 16 12 C -0.13 -2.09 2.93 -11.01 -0.03 -2.12 16 13 C -0.11 -1.31 7.55 31.18 0.24 -1.08 16 14 C -0.13 -1.46 8.09 31.18 0.25 -1.21 16 15 C -0.14 -2.51 7.40 31.12 0.23 -2.28 16 16 N -0.68 -24.05 5.17 -495.57 -2.56 -26.61 16 17 C 0.07 2.51 5.97 85.55 0.51 3.02 16 18 C 0.44 22.43 7.82 87.66 0.69 23.12 16 19 O -0.62 -38.01 15.78 -3.07 -0.05 -38.06 16 20 N -0.57 -31.11 5.29 -306.99 -1.62 -32.73 16 21 C -0.33 -19.96 9.68 84.04 0.81 -19.15 16 22 H 0.07 4.78 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 24 N -0.92 -50.98 13.05 21.67 0.28 -50.70 16 25 Si 0.99 44.78 29.55 68.60 2.03 46.81 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.90 6.32 -2.39 -0.02 0.89 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 1.49 7.45 -2.39 -0.02 1.47 16 33 H 0.03 1.20 7.60 -2.39 -0.02 1.18 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.05 1.30 6.54 -2.39 -0.02 1.28 16 36 H 0.10 1.61 6.17 -2.39 -0.01 1.60 16 37 H 0.05 1.42 6.71 -2.39 -0.02 1.41 16 38 H 0.04 1.41 5.70 -2.39 -0.01 1.40 16 39 H 0.10 1.69 7.89 -2.39 -0.02 1.67 16 40 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.09 0.48 7.89 -2.39 -0.02 0.46 16 42 H 0.09 0.40 6.25 -2.39 -0.01 0.39 16 43 H 0.14 1.34 7.02 -2.39 -0.02 1.32 16 44 H 0.06 1.03 8.09 -2.39 -0.02 1.02 16 45 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.11 0.71 8.14 -2.39 -0.02 0.70 16 47 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.06 1.54 7.45 -2.39 -0.02 1.53 16 50 H 0.34 13.56 6.17 -89.70 -0.55 13.01 16 51 H 0.07 2.13 8.06 -2.38 -0.02 2.11 16 52 H 0.10 3.45 7.44 -2.39 -0.02 3.43 16 53 H 0.40 20.24 7.90 -92.71 -0.73 19.51 16 54 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -82.06 421.87 2.22 -79.84 By element: Atomic # 1 Polarization: 46.70 SS G_CDS: -0.38 Total: 46.32 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 7.01 Total: 11.66 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -6.33 Total: -124.17 kcal Atomic # 8 Polarization: -60.36 SS G_CDS: -0.10 Total: -60.46 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -82.06 2.22 -79.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485428364.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.787 kcal (2) G-P(sol) polarization free energy of solvation -82.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds