Wall clock time and date at job start Sat Apr 11 2020 05:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46868 * 2 1 4 4 C 1.53002 * 109.46868 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47181 * 299.99902 * 4 3 2 6 6 C 1.52995 * 109.47167 * 60.00088 * 4 3 2 7 7 C 1.52998 * 109.47582 * 59.99917 * 6 4 3 8 8 C 1.50705 * 109.46947 * 179.97438 * 4 3 2 9 9 O 1.21281 * 120.00003 * 0.02562 * 8 4 3 10 10 N 1.34777 * 119.99779 * 179.97438 * 8 4 3 11 11 C 1.46500 * 119.99716 * 179.97438 * 10 8 4 12 12 H 1.08996 * 112.85254 * 336.20239 * 11 10 8 13 13 C 1.53781 * 113.68391 * 107.47272 * 11 10 8 14 14 C 1.53774 * 87.08382 * 89.12684 * 13 11 10 15 15 H 1.09001 * 113.69339 * 270.87334 * 14 13 11 16 16 N 1.46905 * 113.61578 * 139.98004 * 14 13 11 17 17 C 1.46892 * 110.99935 * 107.50348 * 16 14 13 18 18 C 1.50706 * 109.47092 * 179.97438 * 17 16 14 19 19 O 1.21292 * 119.99873 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00146 * 180.02562 * 18 17 16 21 21 C 1.37095 * 119.99970 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99992 * 359.97438 * 21 20 18 23 23 C 1.38956 * 120.00025 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99490 * 0.27571 * 23 21 20 25 25 Si 1.86800 * 119.99850 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47364 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46883 * 120.00239 * 25 23 21 28 28 H 1.48497 * 109.46870 * 240.00049 * 25 23 21 29 29 C 1.53774 * 87.08197 * 25.43136 * 14 13 11 30 30 H 1.09002 * 109.47206 * 60.00080 * 1 2 3 31 31 H 1.09003 * 109.46809 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47430 * 300.00034 * 1 2 3 33 33 H 1.08997 * 109.46960 * 239.99745 * 2 1 3 34 34 H 1.09002 * 109.47206 * 119.99920 * 2 1 3 35 35 H 1.08997 * 109.47538 * 60.00099 * 3 2 1 36 36 H 1.09002 * 109.47142 * 299.99959 * 3 2 1 37 37 H 1.09007 * 109.46971 * 299.99900 * 5 4 3 38 38 H 1.09000 * 109.47324 * 59.99796 * 5 4 3 39 39 H 1.08994 * 109.47367 * 180.02562 * 5 4 3 40 40 H 1.08999 * 109.47327 * 180.02562 * 6 4 3 41 41 H 1.09003 * 109.47179 * 299.99678 * 6 4 3 42 42 H 1.09007 * 109.46865 * 300.00056 * 7 6 4 43 43 H 1.09003 * 109.47059 * 59.99688 * 7 6 4 44 44 H 1.08997 * 109.47405 * 180.02562 * 7 6 4 45 45 H 0.96994 * 119.99936 * 0.02562 * 10 8 4 46 46 H 1.08998 * 113.61755 * 334.57651 * 13 11 10 47 47 H 1.09004 * 113.61281 * 203.67738 * 13 11 10 48 48 H 1.00903 * 110.99624 * 231.45810 * 16 14 13 49 49 H 1.09001 * 109.47511 * 60.00413 * 17 16 14 50 50 H 1.09000 * 109.47198 * 299.99775 * 17 16 14 51 51 H 0.96999 * 120.00043 * 359.97438 * 20 18 17 52 52 H 0.96991 * 120.00673 * 359.71788 * 24 23 21 53 53 H 1.08997 * 113.62065 * 89.11674 * 29 14 13 54 54 H 1.09009 * 113.61633 * 220.02149 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0794 0.7215 1.2502 6 6 4.0805 0.7211 -1.2482 7 6 3.5711 1.4421 -2.4978 8 6 4.0723 2.8634 0.0000 9 8 3.2841 3.7852 -0.0004 10 7 5.3974 3.1097 0.0009 11 6 5.8856 4.4909 -0.0002 12 1 5.1606 5.1958 -0.4070 13 6 6.4889 4.9340 1.3431 14 6 7.8352 4.4016 0.8246 15 1 8.0068 3.3494 1.0516 16 7 8.9792 5.2545 1.1737 17 6 9.8048 4.6277 2.2145 18 6 10.9661 5.5294 2.5453 19 8 11.0937 6.5896 1.9701 20 7 11.8635 5.1572 3.4794 21 6 12.9197 5.9777 3.7806 22 1 13.0328 6.9222 3.2691 23 6 13.8447 5.5943 4.7441 24 7 13.7099 4.4427 5.3626 25 14 15.2841 6.7120 5.1540 26 1 15.2121 7.9383 4.3195 27 1 15.2266 7.0869 6.5899 28 1 16.5578 5.9997 4.8791 29 6 7.2955 4.6454 -0.5946 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 3.7157 1.2355 2.1400 38 1 3.7161 -0.3062 1.2503 39 1 5.1694 0.7219 1.2509 40 1 5.1705 0.7207 -1.2476 41 1 3.7172 -0.3066 -1.2482 42 1 2.4810 1.4421 -2.4983 43 1 3.9344 2.4698 -2.4978 44 1 3.9344 0.9279 -3.3876 45 1 6.0276 2.3724 0.0016 46 1 6.1015 4.3816 2.1992 47 1 6.4749 6.0135 1.4932 48 1 9.5304 5.4721 0.3570 49 1 10.1801 3.6703 1.8531 50 1 9.2024 4.4677 3.1087 51 1 11.7617 4.3092 3.9391 52 1 12.9627 3.8622 5.1496 53 1 7.5020 5.6459 -0.9744 54 1 7.5592 3.8599 -1.3030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490939538.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:22 Heat of formation + Delta-G solvation = -101.260281 kcal Electronic energy + Delta-G solvation = -29760.749330 eV Core-core repulsion = 25731.114758 eV Total energy + Delta-G solvation = -4029.634572 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.75132 -40.47874 -39.81401 -37.80566 -36.50787 -35.53687 -34.18810 -33.22699 -32.92203 -31.35277 -28.42334 -27.52252 -26.73206 -26.18937 -25.28418 -24.17684 -23.68947 -22.19236 -21.53712 -20.38174 -19.98853 -19.81957 -18.24441 -17.68419 -17.30691 -16.90492 -16.74951 -16.60324 -16.22016 -15.98355 -15.80195 -15.60114 -15.26581 -14.99152 -14.77373 -14.55488 -14.33155 -14.13372 -13.90511 -13.47795 -13.42619 -13.31901 -13.28522 -13.09932 -13.00038 -12.78624 -12.73777 -12.63830 -12.58924 -12.10412 -11.96560 -11.88869 -11.83104 -11.77712 -11.57747 -11.52510 -11.52422 -11.36928 -11.21272 -10.63382 -10.40693 -10.11143 -10.06753 -9.37776 -8.93571 -6.07531 1.52325 1.54105 1.63019 1.81842 2.00466 2.11560 2.39812 2.82681 3.15915 3.38135 3.51277 3.55165 3.60866 3.65161 3.83734 3.93215 4.06635 4.09577 4.11932 4.23771 4.31836 4.34539 4.39117 4.47050 4.51389 4.53904 4.66184 4.70471 4.77438 4.81835 4.82376 4.88286 4.91837 4.95970 5.00738 5.03860 5.08775 5.12438 5.13505 5.18099 5.24518 5.28334 5.39411 5.45347 5.53223 5.58382 5.62182 5.94890 6.05688 6.35998 6.54106 6.57650 6.74009 7.25486 7.43609 7.91976 8.54418 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024284 B = 0.001709 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.722593 B =16375.551732 C =16910.712560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.094 4.094 4 C -0.073 4.073 5 C -0.143 4.143 6 C -0.109 4.109 7 C -0.158 4.158 8 C 0.524 3.476 9 O -0.584 6.584 10 N -0.699 5.699 11 C 0.126 3.874 12 H 0.086 0.914 13 C -0.138 4.138 14 C 0.062 3.938 15 H 0.091 0.909 16 N -0.672 5.672 17 C 0.066 3.934 18 C 0.440 3.560 19 O -0.619 6.619 20 N -0.587 5.587 21 C -0.411 4.411 22 H 0.072 0.928 23 C -0.041 4.041 24 N -0.917 5.917 25 Si 1.138 2.862 26 H -0.281 1.281 27 H -0.272 1.272 28 H -0.270 1.270 29 C -0.132 4.132 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.056 0.944 43 H 0.032 0.968 44 H 0.070 0.930 45 H 0.413 0.587 46 H 0.063 0.937 47 H 0.081 0.919 48 H 0.348 0.652 49 H 0.072 0.928 50 H 0.099 0.901 51 H 0.385 0.615 52 H 0.260 0.740 53 H 0.098 0.902 54 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.564 -16.266 -13.375 30.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.132 4.132 4 C -0.077 4.077 5 C -0.201 4.201 6 C -0.147 4.147 7 C -0.215 4.215 8 C 0.312 3.688 9 O -0.464 6.464 10 N -0.350 5.350 11 C 0.019 3.981 12 H 0.104 0.896 13 C -0.178 4.178 14 C -0.047 4.047 15 H 0.109 0.891 16 N -0.305 5.305 17 C -0.066 4.066 18 C 0.228 3.772 19 O -0.504 6.504 20 N -0.226 5.226 21 C -0.540 4.540 22 H 0.090 0.910 23 C -0.240 4.240 24 N -0.556 5.556 25 Si 0.958 3.042 26 H -0.206 1.206 27 H -0.198 1.198 28 H -0.195 1.195 29 C -0.171 4.171 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.075 0.925 43 H 0.051 0.949 44 H 0.089 0.911 45 H 0.250 0.750 46 H 0.082 0.918 47 H 0.100 0.900 48 H 0.168 0.832 49 H 0.090 0.910 50 H 0.118 0.882 51 H 0.219 0.781 52 H 0.071 0.929 53 H 0.117 0.883 54 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.022 -14.375 -12.364 29.060 hybrid contribution -0.785 -0.922 -0.954 1.542 sum -22.806 -15.297 -13.319 30.521 Atomic orbital electron populations 1.21782 0.95978 1.02017 1.01429 1.21651 0.95791 0.95195 1.03235 1.21434 0.92198 0.97886 1.01714 1.20903 0.97304 0.90340 0.99112 1.21956 1.01950 1.01566 0.94601 1.21675 1.01450 1.00304 0.91222 1.21863 1.01578 0.99616 0.98431 1.21147 0.81955 0.92005 0.73668 1.90680 1.56449 1.47971 1.51286 1.45612 1.07041 1.07815 1.74529 1.21542 0.95362 0.84167 0.97032 0.89571 1.23509 0.95369 1.01720 0.97228 1.23210 0.89598 0.95634 0.96296 0.89100 1.60176 1.11463 1.45145 1.13686 1.21593 0.92353 0.94695 0.97993 1.20942 0.85403 0.88599 0.82241 1.90501 1.77673 1.26946 1.55312 1.42000 1.23972 1.20304 1.36305 1.20583 1.05385 1.03859 1.24219 0.91008 1.27811 1.03655 0.99835 0.92673 1.70908 1.31995 1.10393 1.42335 0.82553 0.71870 0.72971 0.76811 1.20595 1.19755 1.19544 1.23499 0.93467 1.04203 0.95926 0.93198 0.91676 0.93454 0.90383 0.90701 0.93507 0.92489 0.93293 0.89028 0.90909 0.90203 0.88399 0.92540 0.94863 0.91106 0.75024 0.91826 0.90026 0.83242 0.90990 0.88249 0.78100 0.92891 0.88335 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 71.98 0.71 -0.84 16 2 C -0.12 -1.13 5.23 30.59 0.16 -0.97 16 3 C -0.09 -1.39 3.21 30.59 0.10 -1.29 16 4 C -0.07 -0.93 0.43 -52.93 -0.02 -0.95 16 5 C -0.14 -1.35 8.02 71.98 0.58 -0.77 16 6 C -0.11 -0.91 4.54 30.59 0.14 -0.77 16 7 C -0.16 -1.82 9.31 71.98 0.67 -1.15 16 8 C 0.52 10.25 5.21 87.66 0.46 10.71 16 9 O -0.58 -16.98 15.58 -3.03 -0.05 -17.03 16 10 N -0.70 -10.90 5.05 -440.03 -2.22 -13.12 16 11 C 0.13 2.42 4.32 45.52 0.20 2.62 16 12 H 0.09 2.03 7.46 -2.39 -0.02 2.01 16 13 C -0.14 -3.11 7.68 31.12 0.24 -2.87 16 14 C 0.06 1.28 4.02 45.44 0.18 1.47 16 15 H 0.09 1.52 7.87 -2.39 -0.02 1.50 16 16 N -0.67 -19.96 6.18 -492.87 -3.05 -23.01 16 17 C 0.07 2.15 6.01 85.56 0.51 2.67 16 18 C 0.44 20.74 7.82 87.66 0.69 21.42 16 19 O -0.62 -34.48 15.78 -3.07 -0.05 -34.53 16 20 N -0.59 -29.66 5.28 -306.98 -1.62 -31.28 16 21 C -0.41 -23.58 9.68 84.04 0.81 -22.76 16 22 H 0.07 4.46 7.16 -2.91 -0.02 4.44 16 23 C -0.04 -2.25 5.50 84.93 0.47 -1.78 16 24 N -0.92 -50.85 13.68 21.66 0.30 -50.55 16 25 Si 1.14 48.66 29.92 68.60 2.05 50.71 16 26 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 29 C -0.13 -2.24 7.40 31.12 0.23 -2.01 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.54 6.43 -2.39 -0.02 0.53 16 34 H 0.07 0.57 6.43 -2.39 -0.02 0.55 16 35 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 36 H 0.06 1.01 6.39 -2.39 -0.02 0.99 16 37 H 0.05 0.61 8.14 -2.38 -0.02 0.60 16 38 H 0.09 0.54 6.43 -2.39 -0.02 0.52 16 39 H 0.07 0.51 7.56 -2.39 -0.02 0.49 16 40 H 0.08 0.47 7.57 -2.39 -0.02 0.45 16 41 H 0.10 0.49 6.43 -2.39 -0.02 0.48 16 42 H 0.06 0.71 6.43 -2.38 -0.02 0.69 16 43 H 0.03 0.52 7.22 -2.39 -0.02 0.51 16 44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.41 4.12 7.54 -92.71 -0.70 3.42 16 46 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 48 H 0.35 10.75 8.24 -89.69 -0.74 10.01 16 49 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 50 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 51 H 0.38 17.73 6.73 -92.71 -0.62 17.10 16 52 H 0.26 13.90 6.77 -92.72 -0.63 13.27 16 53 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 54 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -76.21 421.40 0.48 -75.74 By element: Atomic # 1 Polarization: 41.37 SS G_CDS: -1.01 Total: 40.36 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 6.12 Total: 2.71 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -6.60 Total: -117.96 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -0.10 Total: -51.56 kcal Atomic # 14 Polarization: 48.66 SS G_CDS: 2.05 Total: 50.71 kcal Total: -76.21 0.48 -75.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490939538.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.525 kcal (2) G-P(sol) polarization free energy of solvation -76.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds