Wall clock time and date at job start Sat Apr 11 2020 05:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47629 * 2 1 4 4 C 1.52990 * 109.47420 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47337 * 305.00069 * 4 3 2 6 6 C 1.53007 * 109.47358 * 64.99742 * 4 3 2 7 7 C 1.50703 * 109.47398 * 184.99983 * 4 3 2 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 4 3 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 4 3 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 4 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 C 1.53003 * 109.47301 * 179.97438 * 11 10 9 13 13 H 1.09000 * 110.27419 * 54.29951 * 12 11 10 14 14 C 1.54591 * 110.30668 * 292.20886 * 12 11 10 15 15 C 1.55104 * 102.84466 * 219.18440 * 14 12 11 16 16 N 1.48536 * 103.28343 * 37.30449 * 15 14 12 17 17 C 1.46903 * 110.99891 * 200.33389 * 16 15 14 18 18 C 1.50699 * 109.46879 * 307.39608 * 17 16 15 19 19 O 1.21288 * 120.00388 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99567 * 180.02562 * 18 17 16 21 21 C 1.37100 * 119.99844 * 180.02562 * 20 18 17 22 22 H 1.08006 * 119.99706 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00121 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99652 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00442 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46723 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47247 * 119.99522 * 25 23 21 28 28 H 1.48495 * 109.47554 * 240.00031 * 25 23 21 29 29 C 1.47903 * 105.82083 * 320.84922 * 16 15 14 30 30 H 1.09000 * 109.46656 * 299.99963 * 1 2 3 31 31 H 1.09002 * 109.47476 * 59.99940 * 1 2 3 32 32 H 1.09002 * 109.47226 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46907 * 239.99696 * 2 1 3 34 34 H 1.09002 * 109.47057 * 120.00396 * 2 1 3 35 35 H 1.08997 * 109.46955 * 59.99344 * 3 2 1 36 36 H 1.09002 * 109.46740 * 300.00511 * 3 2 1 37 37 H 1.09003 * 109.46582 * 60.00448 * 6 4 3 38 38 H 1.09001 * 109.46852 * 180.02562 * 6 4 3 39 39 H 1.08993 * 109.46731 * 300.00313 * 6 4 3 40 40 H 0.97001 * 119.99727 * 359.97438 * 9 7 4 41 41 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 42 42 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 43 43 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 44 44 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 45 45 H 1.08995 * 110.72674 * 337.48401 * 14 12 11 46 46 H 1.09003 * 110.72162 * 100.77407 * 14 12 11 47 47 H 1.09004 * 110.59491 * 278.88040 * 15 14 12 48 48 H 1.08995 * 110.82952 * 155.84884 * 15 14 12 49 49 H 1.08995 * 109.46996 * 67.39672 * 17 16 15 50 50 H 1.08997 * 109.46635 * 187.40178 * 17 16 15 51 51 H 0.96998 * 120.00380 * 0.02562 * 20 18 17 52 52 H 0.97006 * 120.00132 * 180.02562 * 24 23 21 53 53 H 1.09002 * 109.91187 * 265.97634 * 29 16 15 54 54 H 1.08996 * 110.07841 * 144.77217 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8528 0.8409 6 6 4.0795 0.8328 -1.3083 7 6 4.0725 2.8577 0.1232 8 8 3.2844 3.7761 0.2035 9 7 5.3976 3.1031 0.1436 10 6 5.8860 4.4784 0.2701 11 6 7.4159 4.4780 0.2744 12 6 7.9261 5.9144 0.4059 13 1 7.4872 6.3925 1.2816 14 6 7.5921 6.7212 -0.8698 15 6 8.8630 7.5868 -1.0730 16 7 9.9647 6.6751 -0.6714 17 6 11.1782 7.4318 -0.3352 18 6 11.5193 8.3637 -1.4693 19 8 10.8202 8.3948 -2.4599 20 7 12.6014 9.1625 -1.3828 21 6 12.9115 10.0107 -2.4143 22 1 12.2889 10.0384 -3.2964 23 6 14.0274 10.8339 -2.3254 24 7 14.7851 10.7998 -1.2523 25 14 14.4504 11.9890 -3.7310 26 1 13.4468 11.8376 -4.8152 27 1 14.4404 13.3905 -3.2402 28 1 15.7997 11.6577 -4.2551 29 6 9.4629 5.9291 0.5030 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.7159 1.4225 -2.1499 38 1 5.1695 0.8324 -1.3085 39 1 3.7161 -0.1908 -1.3978 40 1 6.0278 2.3686 0.0790 41 1 5.5252 5.0709 -0.5708 42 1 5.5202 4.9097 1.2019 43 1 7.7767 3.8855 1.1153 44 1 7.7819 4.0467 -0.6574 45 1 7.4398 6.0549 -1.7188 46 1 6.7165 7.3505 -0.7100 47 1 8.8360 8.4650 -0.4277 48 1 8.9686 7.8813 -2.1171 49 1 11.0054 8.0112 0.5717 50 1 12.0044 6.7397 -0.1725 51 1 13.1608 9.1374 -0.5907 52 1 15.5639 11.3747 -1.1899 53 1 9.7722 6.4295 1.4206 54 1 9.8455 4.9086 0.4895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494001567.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:16 Heat of formation + Delta-G solvation = -121.402313 kcal Electronic energy + Delta-G solvation = -28850.561982 eV Core-core repulsion = 24820.053986 eV Total energy + Delta-G solvation = -4030.507996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.05569 -40.71900 -39.29594 -37.08495 -36.43718 -35.90955 -34.16038 -33.30800 -32.78503 -30.95167 -29.29526 -27.86849 -27.47752 -26.01958 -24.92381 -23.46304 -22.38926 -21.96757 -21.15460 -21.04470 -20.46900 -19.87378 -18.00741 -17.74555 -17.20819 -16.92229 -16.71978 -16.50785 -16.25467 -16.05309 -15.74491 -15.61629 -15.23925 -14.89300 -14.84044 -14.69634 -14.19574 -14.04409 -13.82911 -13.53716 -13.48366 -13.35465 -13.18789 -13.13790 -12.93403 -12.81804 -12.72610 -12.42384 -12.30413 -12.28916 -12.13612 -12.11945 -11.85044 -11.83101 -11.67872 -11.64347 -11.51730 -11.40686 -11.39103 -10.69554 -10.15763 -10.06621 -10.00834 -9.28372 -8.47915 -5.96459 1.35434 1.40958 1.55020 1.66077 2.03039 2.22810 2.28231 2.90513 3.19160 3.35062 3.65119 3.70106 3.79456 3.82361 3.90899 3.97882 4.22572 4.26751 4.29860 4.32659 4.38070 4.39429 4.42561 4.44283 4.54188 4.62490 4.64179 4.69432 4.75183 4.81100 4.83085 4.91883 4.96606 4.99881 5.03271 5.06085 5.11123 5.14129 5.23634 5.25282 5.31205 5.33745 5.40011 5.42403 5.44727 5.48405 5.53293 5.88707 6.00222 6.16613 6.58734 6.59772 7.12096 7.28879 7.54438 8.10635 8.69811 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.037502 B = 0.001418 C = 0.001402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.453974 B =19736.152856 C =19968.778380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.100 4.100 4 C -0.104 4.104 5 H 0.122 0.878 6 C -0.144 4.144 7 C 0.507 3.493 8 O -0.592 6.592 9 N -0.718 5.718 10 C 0.121 3.879 11 C -0.105 4.105 12 C -0.087 4.087 13 H 0.087 0.913 14 C -0.114 4.114 15 C 0.037 3.963 16 N -0.513 5.513 17 C 0.048 3.952 18 C 0.437 3.563 19 O -0.614 6.614 20 N -0.572 5.572 21 C -0.333 4.333 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.270 1.270 29 C 0.038 3.962 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.416 0.584 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.022 0.978 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.110 0.890 51 H 0.396 0.604 52 H 0.278 0.722 53 H 0.053 0.947 54 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.476 -23.897 8.595 32.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.138 4.138 4 C -0.125 4.125 5 H 0.139 0.861 6 C -0.201 4.201 7 C 0.295 3.705 8 O -0.472 6.472 9 N -0.370 5.370 10 C -0.003 4.003 11 C -0.143 4.143 12 C -0.106 4.106 13 H 0.105 0.895 14 C -0.152 4.152 15 C -0.091 4.091 16 N -0.237 5.237 17 C -0.084 4.084 18 C 0.225 3.775 19 O -0.501 6.501 20 N -0.210 5.210 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.195 1.195 29 C -0.089 4.089 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.253 0.747 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.112 0.888 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.040 0.960 48 H 0.092 0.908 49 H 0.084 0.916 50 H 0.128 0.872 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.071 0.929 54 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.144 -23.463 7.628 31.851 hybrid contribution 0.815 1.551 0.309 1.779 sum -19.329 -21.912 7.937 30.278 Atomic orbital electron populations 1.21791 0.96022 1.02035 1.01488 1.21574 0.95843 0.95163 1.03136 1.21400 0.92968 0.97720 1.01751 1.21379 0.97263 0.91477 1.02404 0.86050 1.21854 1.02055 1.01970 0.94211 1.21369 0.82216 0.92309 0.74576 1.90690 1.56654 1.48279 1.51577 1.45971 1.07037 1.09882 1.74094 1.21303 0.94761 0.83088 1.01189 1.21729 0.92467 0.95984 1.04075 1.21895 0.94421 0.96203 0.98090 0.89497 1.22632 0.96151 0.98199 0.98257 1.23305 0.90511 0.93727 1.01541 1.64576 1.02982 1.23927 1.32257 1.21997 0.95963 0.95842 0.94566 1.20777 0.82600 0.84051 0.90079 1.90438 1.52462 1.71863 1.35304 1.41927 1.24602 1.35498 1.18934 1.19700 1.10441 1.17428 0.98671 0.90343 1.26017 0.95300 0.99411 1.00396 1.69679 1.17001 1.40615 1.28840 0.84882 0.78199 0.77705 0.77618 1.19849 1.19626 1.19526 1.23105 0.94544 1.00048 0.91250 0.93275 0.93281 0.91692 0.90557 0.90852 0.93049 0.93204 0.93534 0.90667 0.89341 0.74677 0.93111 0.92331 0.88836 0.90532 0.91001 0.90655 0.95956 0.90835 0.91603 0.87181 0.77038 0.91292 0.92896 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.91 71.98 0.71 -0.78 16 2 C -0.12 -1.03 5.69 30.59 0.17 -0.86 16 3 C -0.10 -1.37 4.03 30.59 0.12 -1.25 16 4 C -0.10 -1.14 2.72 -11.54 -0.03 -1.17 16 5 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 6 C -0.14 -1.08 8.85 71.98 0.64 -0.45 16 7 C 0.51 9.34 7.15 87.66 0.63 9.96 16 8 O -0.59 -16.89 15.92 -3.04 -0.05 -16.94 16 9 N -0.72 -9.78 5.45 -463.07 -2.52 -12.30 16 10 C 0.12 1.98 5.53 86.38 0.48 2.46 16 11 C -0.10 -1.41 4.48 30.59 0.14 -1.27 16 12 C -0.09 -1.62 3.01 -9.92 -0.03 -1.65 16 13 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 14 C -0.11 -2.85 5.81 31.86 0.19 -2.66 16 15 C 0.04 1.27 5.31 86.71 0.46 1.73 16 16 N -0.51 -16.66 5.26 -887.22 -4.67 -21.32 16 17 C 0.05 1.68 5.52 85.56 0.47 2.16 16 18 C 0.44 21.08 7.49 87.66 0.66 21.73 16 19 O -0.61 -33.94 13.09 -3.05 -0.04 -33.98 16 20 N -0.57 -29.66 5.29 -306.98 -1.62 -31.29 16 21 C -0.33 -19.05 9.68 84.04 0.81 -18.23 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 24 N -0.92 -49.81 13.05 21.66 0.28 -49.53 16 25 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 29 C 0.04 0.83 6.36 86.45 0.55 1.38 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.08 0.50 6.56 -2.38 -0.02 0.48 16 34 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.05 0.89 7.96 -2.39 -0.02 0.87 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.05 0.51 8.14 -2.39 -0.02 0.50 16 38 H 0.07 0.36 7.56 -2.39 -0.02 0.34 16 39 H 0.09 0.38 6.56 -2.39 -0.02 0.37 16 40 H 0.42 2.93 7.89 -92.71 -0.73 2.20 16 41 H 0.05 1.05 7.52 -2.38 -0.02 1.04 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.08 1.09 8.03 -2.39 -0.02 1.07 16 45 H 0.07 1.82 7.79 -2.39 -0.02 1.80 16 46 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 47 H 0.02 0.80 8.02 -2.38 -0.02 0.78 16 48 H 0.07 3.19 5.96 -2.39 -0.01 3.18 16 49 H 0.07 2.10 7.81 -2.39 -0.02 2.08 16 50 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 51 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 52 H 0.28 14.01 8.31 -92.70 -0.77 13.24 16 53 H 0.05 1.08 7.57 -2.39 -0.02 1.06 16 54 H 0.10 1.78 7.68 -2.39 -0.02 1.76 16 Total: -1.00 -74.69 423.96 -0.74 -75.43 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: -0.58 Total: 33.78 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 6.43 Total: 10.95 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -8.53 Total: -114.44 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -0.09 Total: -50.92 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -74.69 -0.74 -75.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494001567.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.973 kcal (2) G-P(sol) polarization free energy of solvation -74.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds