Wall clock time and date at job start Sat Apr 11 2020 05:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46705 * 2 1 4 4 C 1.52998 * 109.47043 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.47146 * 179.97438 * 4 3 2 6 6 O 1.21275 * 119.99856 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99959 * 179.97438 * 5 4 3 8 8 C 1.46498 * 119.99909 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.47368 * 324.99907 * 8 7 5 10 10 C 1.53002 * 109.47355 * 84.99814 * 8 7 5 11 11 C 1.53002 * 109.46889 * 59.99781 * 10 8 7 12 12 C 1.53004 * 109.46792 * 60.00101 * 11 10 8 13 13 C 1.52992 * 109.47250 * 299.99688 * 12 11 10 14 14 C 1.52999 * 109.47278 * 204.99904 * 8 7 5 15 15 H 1.08996 * 109.47196 * 180.02562 * 14 8 7 16 16 C 1.53002 * 109.47001 * 59.99694 * 14 8 7 17 17 N 1.46903 * 109.47290 * 174.99821 * 16 14 8 18 18 C 1.46892 * 111.00144 * 180.02562 * 17 16 14 19 19 C 1.50695 * 109.47369 * 180.02562 * 18 17 16 20 20 O 1.21297 * 119.99943 * 0.02562 * 19 18 17 21 21 N 1.34779 * 120.00454 * 179.97438 * 19 18 17 22 22 C 1.37099 * 120.00130 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00049 * 359.97438 * 22 21 19 24 24 C 1.38949 * 119.99753 * 180.02562 * 22 21 19 25 25 N 1.31406 * 120.00069 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99709 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47297 * 269.99702 * 26 24 22 28 28 H 1.48503 * 109.47261 * 149.99882 * 26 24 22 29 29 H 1.48500 * 109.47454 * 29.99875 * 26 24 22 30 30 H 1.09002 * 109.47423 * 60.00787 * 1 2 3 31 31 H 1.09005 * 109.46603 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47759 * 300.00193 * 1 2 3 33 33 H 1.08998 * 109.47759 * 239.99807 * 2 1 3 34 34 H 1.08997 * 109.46961 * 119.99278 * 2 1 3 35 35 H 1.08998 * 109.47170 * 59.99446 * 3 2 1 36 36 H 1.08997 * 109.46822 * 299.99363 * 3 2 1 37 37 H 1.08998 * 109.47729 * 59.99618 * 4 3 2 38 38 H 1.09010 * 109.46946 * 299.99548 * 4 3 2 39 39 H 0.96999 * 119.99942 * 359.97438 * 7 5 4 40 40 H 1.08999 * 109.47457 * 300.00482 * 10 8 7 41 41 H 1.08996 * 109.47506 * 180.02562 * 10 8 7 42 42 H 1.08996 * 109.47232 * 300.00395 * 11 10 8 43 43 H 1.09004 * 109.46910 * 179.97438 * 11 10 8 44 44 H 1.09009 * 109.46839 * 179.97438 * 12 11 10 45 45 H 1.08996 * 109.46992 * 60.00147 * 12 11 10 46 46 H 1.08996 * 109.47498 * 300.00149 * 13 12 11 47 47 H 1.09007 * 109.47113 * 179.97438 * 13 12 11 48 48 H 1.09009 * 109.46935 * 55.00150 * 16 14 8 49 49 H 1.08997 * 109.47209 * 295.00659 * 16 14 8 50 50 H 1.00896 * 110.99854 * 303.96332 * 17 16 14 51 51 H 1.08998 * 109.47455 * 60.00178 * 18 17 16 52 52 H 1.09007 * 109.47046 * 300.00638 * 18 17 16 53 53 H 0.97006 * 119.99547 * 0.02562 * 21 19 18 54 54 H 0.97001 * 120.00308 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 6 4.0721 2.8635 -0.0013 6 8 3.2840 3.7853 -0.0017 7 7 5.3972 3.1099 -0.0014 8 6 5.8854 4.4911 -0.0014 9 1 5.2128 5.1143 -0.5908 10 6 5.9370 5.0139 1.4356 11 6 6.8811 4.1393 2.2629 12 6 8.2836 4.1844 1.6531 13 6 8.2321 3.6616 0.2162 14 6 7.2880 4.5363 -0.6111 15 1 7.6514 5.5639 -0.6108 16 6 7.2364 4.0135 -2.0481 17 7 8.5569 4.1680 -2.6731 18 6 8.5451 3.6759 -4.0571 19 6 9.9135 3.8498 -4.6638 20 8 10.8106 4.3355 -4.0076 21 7 10.1409 3.4647 -5.9353 22 6 11.3861 3.6225 -6.4870 23 1 12.1845 4.0557 -5.9030 24 6 11.6203 3.2260 -7.7979 25 7 10.6486 2.6993 -8.5087 26 14 13.3166 3.4416 -8.5499 27 1 13.4044 4.7741 -9.1997 28 1 13.5475 2.3808 -9.5631 29 1 14.3466 3.3415 -7.4849 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 1.6764 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 3.9330 0.9290 -0.8908 38 1 3.9336 0.9288 0.8892 39 1 6.0276 2.3726 -0.0007 40 1 4.9378 4.9818 1.8700 41 1 6.2998 6.0417 1.4355 42 1 6.5179 3.1116 2.2629 43 1 6.9182 4.5120 3.2866 44 1 8.9564 3.5616 2.2428 45 1 8.6469 5.2120 1.6531 46 1 7.8688 2.6340 0.2162 47 1 9.2313 3.6942 -0.2184 48 1 6.4977 4.5804 -2.6148 49 1 6.9586 2.9595 -2.0416 50 1 8.8656 5.1277 -2.6335 51 1 7.8156 4.2407 -4.6374 52 1 8.2761 2.6195 -4.0649 53 1 9.4236 3.0760 -6.4599 54 1 9.7677 2.5877 -8.1183 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498471763.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:40 Heat of formation + Delta-G solvation = -136.655531 kcal Electronic energy + Delta-G solvation = -29811.578343 eV Core-core repulsion = 25780.408918 eV Total energy + Delta-G solvation = -4031.169425 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.44050 -40.32436 -39.42265 -36.87226 -36.22565 -36.06430 -34.66281 -33.18771 -32.31742 -31.78921 -30.41888 -28.48495 -26.38943 -25.60701 -24.74790 -23.38838 -22.29808 -22.06791 -21.60631 -21.30563 -20.02744 -19.95805 -18.30726 -18.04811 -17.04689 -16.98915 -16.83204 -16.63664 -16.19043 -15.88932 -15.55563 -15.42948 -15.25680 -15.07977 -14.97683 -14.71732 -14.53876 -14.34166 -13.78516 -13.57483 -13.43374 -13.30758 -13.22633 -13.14963 -12.98983 -12.82044 -12.68264 -12.62825 -12.19204 -12.07483 -11.94027 -11.89488 -11.89182 -11.84954 -11.52474 -11.45476 -11.41486 -11.27213 -10.97859 -10.78971 -10.41479 -10.11210 -9.97957 -9.38554 -8.93115 -6.07110 1.51971 1.54876 1.71044 1.82172 2.00519 2.27056 2.39719 2.77691 3.16225 3.35070 3.70254 3.75502 3.80346 3.87264 3.95499 4.06694 4.09694 4.16369 4.26609 4.28845 4.36338 4.38072 4.46236 4.47701 4.50451 4.54305 4.64096 4.65628 4.66255 4.74460 4.79955 4.88031 4.94547 4.98371 5.01611 5.11578 5.14878 5.20244 5.26433 5.28332 5.34643 5.38955 5.48851 5.51069 5.53607 5.59101 5.62256 5.91620 5.97813 6.31036 6.57469 6.60824 6.74156 7.32040 7.43939 7.91943 8.54632 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011454 B = 0.002096 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.964522 B =13354.541645 C =15304.456050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.102 4.102 4 C -0.137 4.137 5 C 0.508 3.492 6 O -0.588 6.588 7 N -0.711 5.711 8 C 0.159 3.841 9 H 0.066 0.934 10 C -0.124 4.124 11 C -0.109 4.109 12 C -0.118 4.118 13 C -0.103 4.103 14 C -0.081 4.081 15 H 0.082 0.918 16 C 0.069 3.931 17 N -0.673 5.673 18 C 0.065 3.935 19 C 0.442 3.558 20 O -0.616 6.616 21 N -0.588 5.588 22 C -0.409 4.409 23 H 0.073 0.927 24 C -0.043 4.043 25 N -0.917 5.917 26 Si 1.136 2.864 27 H -0.271 1.271 28 H -0.273 1.273 29 H -0.277 1.277 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.411 0.589 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.060 0.940 48 H 0.026 0.974 49 H 0.081 0.919 50 H 0.343 0.657 51 H 0.061 0.939 52 H 0.106 0.894 53 H 0.384 0.616 54 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.612 -4.566 20.960 27.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.140 4.140 4 C -0.177 4.177 5 C 0.297 3.703 6 O -0.468 6.468 7 N -0.364 5.364 8 C 0.053 3.947 9 H 0.085 0.915 10 C -0.163 4.163 11 C -0.147 4.147 12 C -0.155 4.155 13 C -0.140 4.140 14 C -0.100 4.100 15 H 0.100 0.900 16 C -0.060 4.060 17 N -0.305 5.305 18 C -0.067 4.067 19 C 0.230 3.770 20 O -0.501 6.501 21 N -0.227 5.227 22 C -0.539 4.539 23 H 0.091 0.909 24 C -0.242 4.242 25 N -0.557 5.557 26 Si 0.956 3.044 27 H -0.196 1.196 28 H -0.198 1.198 29 H -0.202 1.202 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.249 0.751 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.045 0.955 49 H 0.099 0.901 50 H 0.161 0.839 51 H 0.079 0.921 52 H 0.124 0.876 53 H 0.218 0.782 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.422 -4.418 20.263 25.845 hybrid contribution -1.556 0.760 0.449 1.789 sum -16.978 -3.659 20.712 27.030 Atomic orbital electron populations 1.21788 0.95941 1.01996 1.01583 1.21530 0.95984 0.95464 1.02896 1.21312 0.93451 0.97333 1.01902 1.21759 0.97422 0.92104 1.06381 1.21305 0.82091 0.92526 0.74406 1.90682 1.56413 1.48139 1.51580 1.46111 1.06925 1.08861 1.74536 1.20778 0.93972 0.83377 0.96566 0.91548 1.21837 0.99648 1.00126 0.94644 1.21448 0.94448 1.00110 0.98696 1.21550 0.96894 1.01495 0.95593 1.21429 0.99496 0.98619 0.94493 1.21323 0.94191 1.01173 0.93319 0.90012 1.22036 0.88123 1.01682 0.94147 1.60100 1.27212 1.27640 1.15522 1.21529 0.92297 1.02788 0.90131 1.20860 0.91582 0.82623 0.81910 1.90500 1.47794 1.49839 1.61988 1.42009 1.11815 1.56614 1.12241 1.20545 0.89634 1.43911 0.99775 0.90861 1.27830 1.09343 0.93927 0.93063 1.70940 1.02979 1.42735 1.39020 0.82591 0.68784 0.77674 0.75379 1.19640 1.19755 1.20229 0.93300 0.91861 0.92984 0.91249 0.90822 0.92760 0.93216 0.87097 0.86553 0.75140 0.92858 0.90786 0.91595 0.91526 0.91340 0.92265 0.91417 0.92099 0.95530 0.90067 0.83871 0.92078 0.87640 0.78177 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.91 71.98 0.71 -1.01 16 2 C -0.12 -1.25 5.93 30.60 0.18 -1.07 16 3 C -0.10 -1.46 4.50 30.60 0.14 -1.32 16 4 C -0.14 -1.56 5.70 29.85 0.17 -1.39 16 5 C 0.51 9.31 7.79 87.66 0.68 9.99 16 6 O -0.59 -16.10 15.64 -3.02 -0.05 -16.14 16 7 N -0.71 -10.58 3.62 -442.54 -1.60 -12.17 16 8 C 0.16 2.78 2.23 44.99 0.10 2.88 16 9 H 0.07 1.47 7.58 -2.39 -0.02 1.45 16 10 C -0.12 -2.02 5.60 30.60 0.17 -1.85 16 11 C -0.11 -1.48 5.77 30.60 0.18 -1.30 16 12 C -0.12 -1.75 5.92 30.59 0.18 -1.57 16 13 C -0.10 -1.79 4.92 30.59 0.15 -1.64 16 14 C -0.08 -1.45 2.13 -10.79 -0.02 -1.48 16 15 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 16 C 0.07 1.47 4.84 86.30 0.42 1.89 16 17 N -0.67 -19.63 5.58 -517.93 -2.89 -22.52 16 18 C 0.07 2.13 6.17 85.56 0.53 2.66 16 19 C 0.44 20.70 7.82 87.66 0.69 21.38 16 20 O -0.62 -33.78 15.78 -3.08 -0.05 -33.83 16 21 N -0.59 -29.69 5.28 -306.98 -1.62 -31.31 16 22 C -0.41 -23.36 9.68 84.04 0.81 -22.55 16 23 H 0.07 4.50 7.16 -2.91 -0.02 4.48 16 24 C -0.04 -2.36 5.50 84.93 0.47 -1.89 16 25 N -0.92 -51.11 13.68 21.66 0.30 -50.81 16 26 Si 1.14 48.48 29.92 68.60 2.05 50.53 16 27 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 29 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 36 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.41 4.45 6.67 -92.71 -0.62 3.83 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 0.83 7.60 -2.39 -0.02 0.81 16 43 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 45 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.07 1.00 6.50 -2.39 -0.02 0.98 16 47 H 0.06 1.41 7.75 -2.38 -0.02 1.40 16 48 H 0.03 0.58 8.14 -2.38 -0.02 0.57 16 49 H 0.08 1.56 7.61 -2.39 -0.02 1.54 16 50 H 0.34 10.79 8.43 -89.70 -0.76 10.03 16 51 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 52 H 0.11 3.06 8.14 -2.38 -0.02 3.04 16 53 H 0.38 17.81 6.73 -92.70 -0.62 17.19 16 54 H 0.26 13.96 6.78 -92.71 -0.63 13.33 16 Total: -1.00 -73.53 424.53 0.73 -72.80 By element: Atomic # 1 Polarization: 42.70 SS G_CDS: -0.96 Total: 41.73 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 5.55 Total: 1.72 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -5.82 Total: -116.81 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -0.10 Total: -49.98 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.05 Total: 50.53 kcal Total: -73.53 0.73 -72.80 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498471763.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.854 kcal (2) G-P(sol) polarization free energy of solvation -73.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds