Wall clock time and date at job start Sat Apr 11 2020 05:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47466 * 180.02562 * 4 3 2 6 6 O 1.21288 * 120.00038 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00369 * 180.02562 * 5 4 3 8 8 C 1.46505 * 120.00115 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.46680 * 34.99949 * 8 7 5 10 10 C 1.52995 * 109.46662 * 274.99892 * 8 7 5 11 11 C 1.53000 * 109.47498 * 299.99707 * 10 8 7 12 12 C 1.52998 * 109.47361 * 300.00832 * 11 10 8 13 13 C 1.52995 * 109.47494 * 59.99165 * 12 11 10 14 14 C 1.52998 * 109.46792 * 154.99920 * 8 7 5 15 15 H 1.09004 * 109.46771 * 179.97438 * 14 8 7 16 16 C 1.52991 * 109.47609 * 299.99820 * 14 8 7 17 17 N 1.46897 * 109.47896 * 185.00287 * 16 14 8 18 18 C 1.46895 * 111.00803 * 179.97438 * 17 16 14 19 19 C 1.50690 * 109.47435 * 180.02562 * 18 17 16 20 20 O 1.21295 * 120.00043 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00025 * 179.97438 * 19 18 17 22 22 C 1.37100 * 119.99911 * 180.02562 * 21 19 18 23 23 H 1.07997 * 120.00099 * 359.97438 * 22 21 19 24 24 C 1.38953 * 120.00008 * 180.02562 * 22 21 19 25 25 N 1.31409 * 120.00362 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99981 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.47394 * 89.99677 * 26 24 22 28 28 H 1.48493 * 109.47266 * 209.99926 * 26 24 22 29 29 H 1.48510 * 109.46952 * 329.99638 * 26 24 22 30 30 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 32 32 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 33 33 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 34 34 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 35 35 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 36 36 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 37 37 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 38 38 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 39 39 H 0.97003 * 119.99640 * 0.02562 * 7 5 4 40 40 H 1.08998 * 109.47402 * 60.00125 * 10 8 7 41 41 H 1.09004 * 109.46813 * 180.02562 * 10 8 7 42 42 H 1.08995 * 109.47152 * 180.02562 * 11 10 8 43 43 H 1.09004 * 109.46796 * 60.00348 * 11 10 8 44 44 H 1.09004 * 109.46771 * 299.99531 * 12 11 10 45 45 H 1.08997 * 109.47484 * 180.02562 * 12 11 10 46 46 H 1.08998 * 109.47402 * 180.02562 * 13 12 11 47 47 H 1.09004 * 109.46813 * 60.00392 * 13 12 11 48 48 H 1.09007 * 109.46953 * 305.00478 * 16 14 8 49 49 H 1.09003 * 109.47442 * 65.00296 * 16 14 8 50 50 H 1.00907 * 110.99702 * 56.03854 * 17 16 14 51 51 H 1.09003 * 109.46954 * 300.00390 * 18 17 16 52 52 H 1.08998 * 109.47104 * 59.99518 * 18 17 16 53 53 H 0.96995 * 120.00362 * 0.02562 * 21 19 18 54 54 H 0.96991 * 120.00185 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2842 3.7852 0.0013 7 7 5.3974 3.1097 -0.0009 8 6 5.8857 4.4909 0.0002 9 1 5.2136 5.1133 0.5910 10 6 5.9358 5.0152 -1.4362 11 6 6.8791 4.1416 -2.2655 12 6 8.2822 4.1858 -1.6571 13 6 8.2321 3.6615 -0.2206 14 6 7.2888 4.5352 0.6086 15 1 7.6523 5.5628 0.6091 16 6 7.2387 4.0108 2.0450 17 7 8.5597 4.1644 2.6689 18 6 8.5494 3.6708 4.0524 19 6 9.9181 3.8451 4.6582 20 8 10.8143 4.3321 4.0019 21 7 10.1464 3.4597 5.9294 22 6 11.3915 3.6187 6.4807 23 1 12.1895 4.0524 5.8964 24 6 11.6271 3.2209 7.7911 25 7 12.8206 3.3729 8.3195 26 14 10.2474 2.4688 8.8012 27 1 10.2453 0.9953 8.6167 28 1 10.4544 2.7876 10.2367 29 1 8.9456 3.0257 8.3532 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6765 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 3.9337 0.9286 0.8891 38 1 3.9330 0.9289 -0.8908 39 1 6.0277 2.3723 -0.0024 40 1 4.9362 4.9836 -1.8696 41 1 6.2996 6.0428 -1.4354 42 1 6.9151 4.5154 -3.2887 43 1 6.5158 3.1139 -2.2663 44 1 8.6456 5.2135 -1.6562 45 1 8.9544 3.5638 -2.2481 46 1 9.2316 3.6935 0.2129 47 1 7.8688 2.6338 -0.2215 48 1 6.5006 4.5772 2.6130 49 1 6.9609 2.9568 2.0376 50 1 8.8685 5.1243 2.6300 51 1 7.8204 4.2351 4.6340 52 1 8.2803 2.6146 4.0593 53 1 9.4298 3.0698 6.4542 54 1 12.9851 3.0949 9.2340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498471770.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:48 Heat of formation + Delta-G solvation = -131.565092 kcal Electronic energy + Delta-G solvation = -29841.023723 eV Core-core repulsion = 25810.075036 eV Total energy + Delta-G solvation = -4030.948687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.40388 -40.28980 -39.38487 -36.69706 -36.18030 -35.83777 -34.63028 -33.75094 -32.34392 -31.76311 -30.39432 -28.67871 -26.42637 -25.56701 -24.58247 -23.34640 -22.26557 -22.02257 -21.44878 -21.22327 -20.28289 -19.94690 -18.11173 -17.78284 -17.07879 -16.97119 -16.77647 -16.58698 -16.13737 -15.90748 -15.46603 -15.31140 -15.22205 -14.96236 -14.85067 -14.73772 -14.51012 -14.32931 -14.07950 -13.75088 -13.52509 -13.35667 -13.20336 -13.11835 -12.99323 -12.89700 -12.64112 -12.59851 -12.41110 -12.16713 -12.05064 -11.98320 -11.85957 -11.82117 -11.51069 -11.43242 -11.38495 -11.23634 -10.94634 -10.75719 -10.42811 -10.24495 -9.94520 -9.30442 -8.41170 -6.01982 1.30221 1.35614 1.44427 1.74416 1.96138 2.22936 2.30389 2.71278 3.15052 3.36805 3.74635 3.79431 3.84151 3.90838 3.98018 4.09106 4.13852 4.20270 4.30804 4.34728 4.39080 4.45308 4.49164 4.52111 4.56912 4.59104 4.67207 4.68249 4.70663 4.79379 4.82720 4.92293 4.96863 5.01093 5.04170 5.13599 5.17567 5.23232 5.29455 5.30279 5.37469 5.41068 5.51117 5.52249 5.54625 5.57469 5.65528 5.90757 6.04898 6.37529 6.59876 6.64604 6.88379 7.35666 7.40135 7.96693 8.76422 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010240 B = 0.002282 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.733564 B =12264.981764 C =14513.850219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.102 4.102 4 C -0.137 4.137 5 C 0.508 3.492 6 O -0.588 6.588 7 N -0.711 5.711 8 C 0.159 3.841 9 H 0.067 0.933 10 C -0.125 4.125 11 C -0.109 4.109 12 C -0.119 4.119 13 C -0.103 4.103 14 C -0.082 4.082 15 H 0.080 0.920 16 C 0.069 3.931 17 N -0.677 5.677 18 C 0.062 3.938 19 C 0.449 3.551 20 O -0.612 6.612 21 N -0.592 5.592 22 C -0.328 4.328 23 H 0.055 0.945 24 C -0.016 4.016 25 N -0.934 5.934 26 Si 0.965 3.035 27 H -0.256 1.256 28 H -0.276 1.276 29 H -0.232 1.232 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.411 0.589 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.029 0.971 49 H 0.084 0.916 50 H 0.343 0.657 51 H 0.070 0.930 52 H 0.115 0.885 53 H 0.389 0.611 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.419 -7.254 -19.615 32.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.140 4.140 4 C -0.176 4.176 5 C 0.297 3.703 6 O -0.469 6.469 7 N -0.364 5.364 8 C 0.054 3.946 9 H 0.086 0.914 10 C -0.163 4.163 11 C -0.147 4.147 12 C -0.156 4.156 13 C -0.140 4.140 14 C -0.101 4.101 15 H 0.099 0.901 16 C -0.059 4.059 17 N -0.309 5.309 18 C -0.070 4.070 19 C 0.237 3.763 20 O -0.497 6.497 21 N -0.234 5.234 22 C -0.457 4.457 23 H 0.073 0.927 24 C -0.215 4.215 25 N -0.575 5.575 26 Si 0.785 3.215 27 H -0.180 1.180 28 H -0.201 1.201 29 H -0.156 1.156 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.249 0.751 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.047 0.953 49 H 0.102 0.898 50 H 0.161 0.839 51 H 0.088 0.912 52 H 0.133 0.867 53 H 0.225 0.775 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.975 -6.882 -20.142 32.060 hybrid contribution -0.160 0.479 1.440 1.526 sum -24.135 -6.403 -18.701 31.197 Atomic orbital electron populations 1.21790 0.96012 1.01966 1.01569 1.21528 0.95921 0.95505 1.02909 1.21310 0.93526 0.97283 1.01883 1.21753 0.97343 0.92120 1.06420 1.21302 0.82100 0.92506 0.74407 1.90687 1.56443 1.48142 1.51603 1.46107 1.06906 1.08850 1.74506 1.20770 0.94051 0.83387 0.96432 0.91440 1.21839 0.99569 1.00082 0.94823 1.21443 0.94480 1.00140 0.98631 1.21553 0.96848 1.01422 0.95801 1.21427 0.99577 0.98685 0.94338 1.21324 0.94048 1.01125 0.93603 0.90144 1.22028 0.88145 1.01837 0.93931 1.60096 1.27206 1.27704 1.15922 1.21615 0.91891 1.03483 0.90047 1.20985 0.91673 0.81918 0.81734 1.90545 1.48079 1.49070 1.61984 1.42042 1.10955 1.57734 1.12622 1.19004 0.88410 1.40806 0.97516 0.92654 1.26126 1.00168 0.97645 0.97553 1.69801 1.23562 1.47984 1.16140 0.85359 0.78647 0.79541 0.77924 1.18028 1.20125 1.15580 0.91901 0.93261 0.93059 0.90898 0.91143 0.92895 0.93133 0.86921 0.86653 0.75094 0.92907 0.90896 0.91705 0.91548 0.92403 0.91465 0.92092 0.91293 0.95255 0.89798 0.83895 0.91190 0.86711 0.77522 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.12 -1.13 5.93 30.59 0.18 -0.95 16 3 C -0.10 -1.35 4.50 30.59 0.14 -1.21 16 4 C -0.14 -1.39 5.70 29.85 0.17 -1.22 16 5 C 0.51 8.67 7.79 87.66 0.68 9.35 16 6 O -0.59 -15.45 15.65 -3.05 -0.05 -15.49 16 7 N -0.71 -9.63 3.62 -442.54 -1.60 -11.23 16 8 C 0.16 2.61 2.23 44.99 0.10 2.71 16 9 H 0.07 1.40 7.58 -2.39 -0.02 1.39 16 10 C -0.12 -1.96 5.60 30.59 0.17 -1.79 16 11 C -0.11 -1.44 5.77 30.59 0.18 -1.26 16 12 C -0.12 -1.73 5.92 30.59 0.18 -1.55 16 13 C -0.10 -1.70 4.92 30.59 0.15 -1.55 16 14 C -0.08 -1.37 2.12 -10.80 -0.02 -1.40 16 15 H 0.08 1.46 8.14 -2.38 -0.02 1.45 16 16 C 0.07 1.33 4.84 86.30 0.42 1.74 16 17 N -0.68 -18.33 5.58 -517.97 -2.89 -21.22 16 18 C 0.06 1.81 6.17 85.55 0.53 2.34 16 19 C 0.45 19.86 7.82 87.65 0.69 20.55 16 20 O -0.61 -33.39 15.78 -3.08 -0.05 -33.43 16 21 N -0.59 -27.58 5.09 -306.99 -1.56 -29.14 16 22 C -0.33 -19.14 10.16 84.04 0.85 -18.28 16 23 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 24 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 25 N -0.93 -56.19 13.96 21.66 0.30 -55.89 16 26 Si 0.97 38.51 27.74 68.60 1.90 40.41 16 27 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 28 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 29 H -0.23 -7.80 6.52 99.48 0.65 -7.15 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 36 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 37 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.41 3.87 6.67 -92.71 -0.62 3.25 16 40 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.80 7.60 -2.38 -0.02 0.78 16 44 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 45 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.06 1.37 7.75 -2.39 -0.02 1.35 16 47 H 0.07 0.94 6.51 -2.38 -0.02 0.92 16 48 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 49 H 0.08 1.39 7.61 -2.39 -0.02 1.38 16 50 H 0.34 10.21 8.43 -89.69 -0.76 9.46 16 51 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 52 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 53 H 0.39 14.98 5.76 -92.71 -0.53 14.45 16 54 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -78.59 423.10 0.57 -78.02 By element: Atomic # 1 Polarization: 42.88 SS G_CDS: -1.08 Total: 41.81 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 5.59 Total: 6.17 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -5.75 Total: -117.48 kcal Atomic # 8 Polarization: -48.83 SS G_CDS: -0.10 Total: -48.93 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 1.90 Total: 40.41 kcal Total: -78.59 0.57 -78.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498471770.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.547 kcal (2) G-P(sol) polarization free energy of solvation -78.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds