Wall clock time and date at job start Sat Apr 11 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47241 * 2 1 4 4 C 1.53000 * 109.47220 * 119.99845 * 2 1 3 5 5 N 1.46496 * 109.47356 * 175.00134 * 4 2 1 6 6 C 1.46760 * 124.34738 * 270.02467 * 5 4 2 7 7 C 1.54486 * 105.47112 * 162.98527 * 6 5 4 8 8 H 1.08995 * 110.96555 * 267.29529 * 7 6 5 9 9 C 1.50698 * 110.96882 * 143.53683 * 7 6 5 10 10 O 1.21284 * 120.00581 * 6.16102 * 9 7 6 11 11 N 1.34775 * 120.00030 * 186.17071 * 9 7 6 12 12 C 1.46506 * 119.99772 * 359.97438 * 11 9 7 13 13 C 1.46501 * 120.00452 * 180.02562 * 11 9 7 14 14 C 1.52987 * 109.47647 * 89.99077 * 13 11 9 15 15 C 1.53002 * 109.47449 * 180.02562 * 14 13 11 16 16 N 1.46503 * 109.47316 * 180.02562 * 15 14 13 17 17 C 1.46501 * 120.00284 * 89.99910 * 16 15 14 18 18 C 1.36935 * 119.99832 * 270.00000 * 16 15 14 19 19 H 1.08001 * 120.00293 * 23.04581 * 18 16 15 20 20 C 1.38810 * 119.99961 * 203.04676 * 18 16 15 21 21 N 1.31617 * 120.00146 * 12.93801 * 20 18 16 22 22 Si 1.86809 * 119.99898 * 192.93757 * 20 18 16 23 23 H 1.48494 * 109.47021 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.46984 * 119.99892 * 22 20 18 25 25 H 1.48506 * 109.46923 * 239.99705 * 22 20 18 26 26 C 1.54624 * 101.76582 * 25.41530 * 7 6 5 27 27 C 1.34417 * 124.35126 * 90.02365 * 5 4 2 28 28 O 1.21287 * 124.93809 * 0.68147 * 27 5 4 29 29 H 1.08997 * 109.47390 * 299.99904 * 1 2 3 30 30 H 1.09006 * 109.47161 * 60.00131 * 1 2 3 31 31 H 1.09002 * 109.47195 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47390 * 240.00096 * 2 1 3 33 33 H 1.08991 * 109.46969 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46721 * 300.00046 * 3 2 1 35 35 H 1.08997 * 109.46849 * 59.99765 * 3 2 1 36 36 H 1.09001 * 109.46809 * 55.00011 * 4 2 1 37 37 H 1.09005 * 109.47173 * 295.00263 * 4 2 1 38 38 H 1.08996 * 110.25015 * 43.98775 * 6 5 4 39 39 H 1.09004 * 110.24929 * 281.97744 * 6 5 4 40 40 H 1.08989 * 109.47068 * 90.00742 * 12 11 9 41 41 H 1.09010 * 109.46960 * 210.00639 * 12 11 9 42 42 H 1.09000 * 109.47014 * 330.00019 * 12 11 9 43 43 H 1.09000 * 109.46956 * 209.99799 * 13 11 9 44 44 H 1.09005 * 109.46730 * 329.99076 * 13 11 9 45 45 H 1.09000 * 109.47533 * 300.00369 * 14 13 11 46 46 H 1.09005 * 109.47056 * 60.00199 * 14 13 11 47 47 H 1.09005 * 109.47114 * 300.00157 * 15 14 13 48 48 H 1.08996 * 109.46862 * 60.00003 * 15 14 13 49 49 H 1.08998 * 109.46668 * 95.11752 * 17 16 15 50 50 H 1.08995 * 109.47271 * 215.12482 * 17 16 15 51 51 H 1.08999 * 109.46987 * 335.12286 * 17 16 15 52 52 H 0.96998 * 120.00080 * 180.02562 * 21 20 18 53 53 H 1.08999 * 110.48945 * 216.52538 * 26 7 6 54 54 H 1.09004 * 110.59831 * 93.93702 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1906 6 6 4.2257 -1.9485 0.5840 7 6 5.6665 -1.4365 0.3634 8 1 5.7827 -1.0175 -0.6361 9 6 6.6715 -2.5326 0.6067 10 8 6.2940 -3.6652 0.8204 11 7 7.9901 -2.2544 0.5872 12 6 8.4463 -0.8864 0.3287 13 6 8.9673 -3.3201 0.8231 14 6 9.3451 -3.9699 -0.5093 15 6 10.3652 -5.0833 -0.2627 16 7 10.7274 -5.7052 -1.5388 17 6 11.8536 -5.1811 -2.3156 18 6 10.0134 -6.7764 -2.0055 19 1 9.0001 -6.9380 -1.6687 20 6 10.5920 -7.6545 -2.9116 21 7 11.8894 -7.6153 -3.1293 22 14 9.5291 -8.8920 -3.8219 23 1 8.1139 -8.7330 -3.4013 24 1 9.6406 -8.6591 -5.2843 25 1 9.9882 -10.2679 -3.5033 26 6 5.7779 -0.3341 1.4419 27 6 4.3471 0.0926 1.6855 28 8 4.0129 1.1127 2.2500 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6054 -1.7198 1.2951 37 1 1.7516 -0.1583 2.1370 38 1 3.7719 -2.2201 -0.3691 39 1 4.2289 -2.8046 1.2587 40 1 8.5325 -0.3478 1.2723 41 1 9.4184 -0.9145 -0.1637 42 1 7.7276 -0.3792 -0.3149 43 1 9.8588 -2.8991 1.2879 44 1 8.5335 -4.0711 1.4835 45 1 8.4536 -4.3909 -0.9741 46 1 9.7789 -3.2190 -1.1697 47 1 11.2569 -4.6627 0.2022 48 1 9.9310 -5.8341 0.3974 49 1 12.7526 -5.7514 -2.0821 50 1 11.6334 -5.2690 -3.3794 51 1 12.0125 -4.1327 -2.0630 52 1 12.2937 -8.2287 -3.7627 53 1 6.3680 0.5041 1.0713 54 1 6.2174 -0.7344 2.3555 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502339361.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:53 Heat of formation + Delta-G solvation = -74.031981 kcal Electronic energy + Delta-G solvation = -30321.108712 eV Core-core repulsion = 26292.654847 eV Total energy + Delta-G solvation = -4028.453864 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.04739 -40.53352 -37.98749 -37.61526 -36.73936 -36.66546 -34.19463 -33.02049 -31.69997 -28.82884 -28.16657 -28.05033 -27.83779 -27.52382 -26.58428 -24.49836 -23.02754 -21.89668 -21.51533 -20.44572 -20.03365 -18.75193 -18.43616 -17.95666 -17.36127 -16.96045 -16.68488 -16.43691 -16.16212 -15.76789 -15.55021 -15.30635 -15.03062 -14.91722 -14.75225 -14.53632 -14.40666 -14.20787 -13.94800 -13.80185 -13.47977 -13.30168 -13.14569 -13.09488 -12.91536 -12.89407 -12.72993 -12.59847 -12.54799 -12.47016 -12.38337 -12.22845 -12.06747 -12.04160 -11.87540 -11.86285 -11.64644 -11.38643 -11.13387 -10.71621 -10.63917 -9.73534 -9.65160 -8.74362 -7.83241 -5.32109 1.43488 1.44679 1.49451 1.55611 1.56372 1.84292 2.12023 2.50317 3.11345 3.28210 3.29893 3.61247 3.72442 3.82396 3.87129 3.94979 4.01932 4.12085 4.17880 4.34947 4.41970 4.44768 4.50837 4.55404 4.57788 4.62082 4.64902 4.71930 4.77123 4.77952 4.80380 4.81125 4.88095 4.90588 4.96007 4.97422 5.01829 5.03657 5.19034 5.27364 5.31188 5.33504 5.38561 5.52224 5.54419 5.61024 5.64080 5.72354 6.06038 6.33681 6.40961 7.08981 7.14970 7.16280 7.89490 8.31005 9.19313 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.002178 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.448107 B =12851.985601 C =14078.539876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C -0.137 4.137 4 C 0.124 3.876 5 N -0.613 5.613 6 C 0.118 3.882 7 C -0.110 4.110 8 H 0.143 0.857 9 C 0.518 3.482 10 O -0.578 6.578 11 N -0.608 5.608 12 C 0.064 3.936 13 C 0.124 3.876 14 C -0.129 4.129 15 C 0.151 3.849 16 N -0.623 5.623 17 C 0.178 3.822 18 C -0.258 4.258 19 H 0.061 0.939 20 C -0.055 4.055 21 N -0.938 5.938 22 Si 0.965 3.035 23 H -0.271 1.271 24 H -0.288 1.288 25 H -0.290 1.290 26 C -0.135 4.135 27 C 0.514 3.486 28 O -0.565 6.565 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.059 0.941 35 H 0.044 0.956 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.063 0.937 45 H 0.027 0.973 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.034 0.966 49 H 0.005 0.995 50 H 0.011 0.989 51 H 0.036 0.964 52 H 0.248 0.752 53 H 0.137 0.863 54 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.756 21.061 8.016 28.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 C -0.194 4.194 4 C 0.003 3.997 5 N -0.346 5.346 6 C -0.005 4.005 7 C -0.131 4.131 8 H 0.161 0.839 9 C 0.306 3.694 10 O -0.457 6.457 11 N -0.340 5.340 12 C -0.077 4.077 13 C 0.001 3.999 14 C -0.170 4.170 15 C 0.025 3.975 16 N -0.346 5.346 17 C 0.033 3.967 18 C -0.388 4.388 19 H 0.078 0.922 20 C -0.250 4.250 21 N -0.586 5.586 22 Si 0.794 3.206 23 H -0.196 1.196 24 H -0.214 1.214 25 H -0.217 1.217 26 C -0.175 4.175 27 C 0.302 3.698 28 O -0.445 6.445 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.124 0.876 44 H 0.082 0.918 45 H 0.046 0.954 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.053 0.947 49 H 0.023 0.977 50 H 0.030 0.970 51 H 0.055 0.945 52 H 0.058 0.942 53 H 0.155 0.845 54 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.092 20.918 8.340 28.271 hybrid contribution -0.184 -1.156 -0.729 1.379 sum -17.276 19.763 7.611 27.330 Atomic orbital electron populations 1.21751 0.93254 1.02612 1.02384 1.21502 0.96984 0.96265 0.98126 1.21745 1.00240 0.96121 1.01303 1.21644 0.77348 1.02057 0.98659 1.48413 1.06762 1.21553 1.57835 1.21967 0.89726 0.88615 1.00197 1.22155 0.93349 0.94511 1.03094 0.83929 1.20588 0.83583 0.89134 0.76084 1.90738 1.79956 1.24429 1.50603 1.47947 1.05136 1.11115 1.69758 1.22258 1.02253 0.80310 1.02920 1.21398 0.92249 0.89883 0.96355 1.22268 0.98859 0.98325 0.97565 1.20821 0.96278 0.93733 0.86711 1.44175 1.35713 1.34102 1.20651 1.20525 0.89376 0.93050 0.93763 1.19446 0.94755 1.02164 1.22471 0.92162 1.25767 0.96574 1.00015 1.02651 1.70225 1.09895 1.40208 1.38237 0.85227 0.78583 0.78649 0.78171 1.19574 1.21447 1.21664 1.22450 0.94814 0.99848 1.00436 1.21132 0.89322 0.82303 0.77000 1.90718 1.82623 1.26720 1.44400 0.92561 0.91828 0.91553 0.90504 0.94216 0.92181 0.93720 0.88637 0.91006 0.88348 0.90669 0.89999 0.90033 0.89101 0.87611 0.91805 0.95445 0.92151 0.92250 0.94739 0.97720 0.97020 0.94545 0.94237 0.84501 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.19 71.98 0.66 -0.73 16 2 C -0.11 -1.38 3.13 -10.79 -0.03 -1.41 16 3 C -0.14 -2.14 8.35 71.98 0.60 -1.53 16 4 C 0.12 1.78 5.39 86.38 0.47 2.24 16 5 N -0.61 -10.08 2.78 -817.98 -2.27 -12.36 16 6 C 0.12 1.87 6.66 86.84 0.58 2.44 16 7 C -0.11 -1.56 2.57 -10.48 -0.03 -1.59 16 8 H 0.14 1.37 7.56 -2.39 -0.02 1.35 16 9 C 0.52 11.63 6.99 87.66 0.61 12.24 16 10 O -0.58 -18.71 15.15 -3.04 -0.05 -18.76 16 11 N -0.61 -11.91 2.87 -846.76 -2.43 -14.34 16 12 C 0.06 0.65 8.98 127.77 1.15 1.80 16 13 C 0.12 3.04 5.41 86.37 0.47 3.51 16 14 C -0.13 -4.25 5.86 30.59 0.18 -4.07 16 15 C 0.15 6.00 5.64 86.38 0.49 6.49 16 16 N -0.62 -31.77 2.92 -726.94 -2.12 -33.89 16 17 C 0.18 8.77 8.98 127.77 1.15 9.91 16 18 C -0.26 -14.69 9.65 84.03 0.81 -13.88 16 19 H 0.06 3.45 7.86 -2.91 -0.02 3.43 16 20 C -0.06 -3.19 5.10 84.86 0.43 -2.76 16 21 N -0.94 -56.56 10.71 21.65 0.23 -56.32 16 22 Si 0.97 46.41 29.57 68.60 2.03 48.44 16 23 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 C -0.14 -1.72 5.04 30.59 0.15 -1.57 16 27 C 0.51 9.80 6.59 87.90 0.58 10.38 16 28 O -0.57 -14.79 16.49 -3.05 -0.05 -14.84 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.57 8.14 -2.38 -0.02 0.56 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.04 0.73 6.14 -2.39 -0.01 0.71 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.21 7.92 -2.38 -0.02 1.19 16 38 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.50 7.06 -2.38 -0.02 1.49 16 40 H 0.08 0.52 7.90 -2.39 -0.02 0.50 16 41 H 0.08 0.82 8.07 -2.38 -0.02 0.80 16 42 H 0.09 0.58 5.96 -2.39 -0.01 0.56 16 43 H 0.11 1.95 8.07 -2.39 -0.02 1.93 16 44 H 0.06 1.83 7.42 -2.38 -0.02 1.81 16 45 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 47 H 0.06 2.06 8.07 -2.38 -0.02 2.04 16 48 H 0.03 1.44 8.04 -2.39 -0.02 1.42 16 49 H 0.00 0.24 7.34 -2.39 -0.02 0.23 16 50 H 0.01 0.60 7.34 -2.39 -0.02 0.58 16 51 H 0.04 1.47 8.03 -2.39 -0.02 1.45 16 52 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 53 H 0.14 1.03 7.10 -2.39 -0.02 1.02 16 54 H 0.11 1.44 7.89 -2.38 -0.02 1.42 16 Total: -1.00 -77.96 422.88 4.44 -73.51 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.85 Total: 7.08 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 8.27 Total: 21.49 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -6.60 Total: -116.92 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.10 Total: -33.60 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -77.96 4.44 -73.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502339361.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.519 kcal (2) G-P(sol) polarization free energy of solvation -77.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds