Wall clock time and date at job start Sat Apr 11 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 H 1.09001 * 109.46998 * 299.99705 * 4 2 1 6 6 C 1.52997 * 109.47127 * 59.99836 * 4 2 1 7 7 C 1.53001 * 109.47049 * 185.00237 * 6 4 2 8 8 N 1.46496 * 109.46907 * 180.02562 * 7 6 4 9 9 C 1.46500 * 119.99998 * 90.00132 * 8 7 6 10 10 C 1.34773 * 119.99909 * 269.99926 * 8 7 6 11 11 O 1.21277 * 120.00549 * 359.97438 * 10 8 7 12 12 C 1.50706 * 119.99819 * 180.02562 * 10 8 7 13 13 C 1.52995 * 109.47135 * 180.02562 * 12 10 8 14 14 H 1.09005 * 110.43354 * 307.53847 * 13 12 10 15 15 C 1.54631 * 110.49024 * 184.99638 * 13 12 10 16 16 C 1.54475 * 101.76608 * 216.52240 * 15 13 12 17 17 N 1.46760 * 105.47488 * 25.41173 * 16 15 13 18 18 C 1.46507 * 124.34859 * 162.97977 * 17 16 15 19 19 C 1.34413 * 111.30413 * 342.98773 * 17 16 15 20 20 O 1.21284 * 124.94550 * 180.44410 * 19 17 16 21 21 N 1.46500 * 109.47249 * 180.02562 * 4 2 1 22 22 C 1.36932 * 120.00140 * 84.99833 * 21 4 2 23 23 H 1.07994 * 120.00447 * 359.97438 * 22 21 4 24 24 C 1.38813 * 119.99838 * 180.02562 * 22 21 4 25 25 N 1.31623 * 120.00145 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99922 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46920 * 359.97438 * 26 24 22 28 28 H 1.48505 * 109.47001 * 120.00056 * 26 24 22 29 29 H 1.48500 * 109.47076 * 239.99780 * 26 24 22 30 30 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 31 31 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 32 32 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 34 34 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 36 36 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 37 37 H 1.08998 * 109.47192 * 305.00392 * 6 4 2 38 38 H 1.08998 * 109.46934 * 65.00238 * 6 4 2 39 39 H 1.08998 * 109.47250 * 300.00119 * 7 6 4 40 40 H 1.08998 * 109.47252 * 60.00195 * 7 6 4 41 41 H 1.09000 * 109.47516 * 89.99609 * 9 8 7 42 42 H 1.09002 * 109.47122 * 209.99578 * 9 8 7 43 43 H 1.09000 * 109.47107 * 329.99815 * 9 8 7 44 44 H 1.09004 * 109.47203 * 299.99490 * 12 10 8 45 45 H 1.08992 * 109.47654 * 59.99464 * 12 10 8 46 46 H 1.08997 * 110.96548 * 334.64053 * 15 13 12 47 47 H 1.09000 * 110.96805 * 98.36444 * 15 13 12 48 48 H 1.09004 * 110.24798 * 144.41725 * 16 15 13 49 49 H 1.09005 * 110.24423 * 266.32183 * 16 15 13 50 50 H 1.09003 * 109.46621 * 90.00021 * 18 17 16 51 51 H 1.08992 * 109.47244 * 210.00123 * 18 17 16 52 52 H 1.09000 * 109.47033 * 330.00765 * 18 17 16 53 53 H 0.97005 * 119.99374 * 264.99912 * 21 4 2 54 54 H 0.97001 * 119.99679 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2074 2.1393 6 6 1.5300 -2.1638 1.2493 7 6 1.9347 -2.8478 2.5567 8 7 1.4469 -4.2291 2.5564 9 6 2.2873 -5.3027 2.0202 10 6 0.2249 -4.5123 3.0493 11 8 -0.4707 -3.6238 3.4936 12 6 -0.2767 -5.9335 3.0495 13 6 -1.6796 -5.9790 3.6581 14 1 -1.6884 -5.4880 4.6313 15 6 -2.1674 -7.4409 3.7851 16 6 -3.6722 -7.2998 3.4659 17 7 -3.7847 -6.0960 2.6340 18 6 -4.9494 -5.7680 1.8079 19 6 -2.6820 -5.3331 2.7271 20 8 -2.5151 -4.2798 2.1495 21 7 3.5050 -0.7208 1.2496 22 6 4.1892 0.3541 1.7511 23 1 3.6489 1.2018 2.1460 24 6 5.5773 0.3548 1.7509 25 7 6.2359 -0.6780 1.2691 26 14 6.5107 1.8215 2.4343 27 1 5.5453 2.8443 2.9108 28 1 7.3649 1.3809 3.5664 29 1 7.3641 2.4055 1.3685 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 0.4437 -2.1651 1.1597 38 1 1.9646 -2.7028 0.4075 39 1 3.0210 -2.8465 2.6463 40 1 1.5001 -2.3088 3.3985 41 1 2.9051 -5.7137 2.8187 42 1 1.6541 -6.0891 1.6094 43 1 2.9281 -4.9041 1.2337 44 1 -0.3129 -6.3062 2.0258 45 1 0.3960 -6.5562 3.6392 46 1 -1.6723 -8.0819 3.0557 47 1 -2.0162 -7.8160 4.7973 48 1 -4.0246 -8.1725 2.9162 49 1 -4.2433 -7.1785 4.3864 50 1 -5.6559 -5.1795 2.3934 51 1 -4.6286 -5.1922 0.9399 52 1 -5.4303 -6.6882 1.4761 53 1 3.9903 -1.4820 0.8945 54 1 7.2059 -0.6776 1.2693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506383320.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:02 Heat of formation + Delta-G solvation = -85.726629 kcal Electronic energy + Delta-G solvation = -31125.308176 eV Core-core repulsion = 27096.347194 eV Total energy + Delta-G solvation = -4028.960982 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.69941 -40.47145 -38.90710 -37.35487 -36.52989 -34.94949 -34.78220 -33.02746 -31.64006 -30.48775 -28.14136 -27.86061 -27.52103 -27.06345 -25.81766 -24.61323 -22.74439 -22.28549 -20.84318 -20.53007 -19.72752 -19.13269 -18.12604 -17.72214 -17.33281 -16.93117 -16.82759 -16.57815 -15.98416 -15.76728 -15.37023 -15.24765 -15.06955 -14.69946 -14.62577 -14.48091 -14.18886 -13.90785 -13.79797 -13.58492 -13.38693 -13.25119 -13.21168 -13.15202 -13.03702 -12.95628 -12.87634 -12.79775 -12.61311 -12.52448 -12.26554 -12.20713 -11.99245 -11.78514 -11.74225 -11.71286 -11.44734 -11.23134 -10.85710 -10.73726 -10.49384 -9.63417 -9.54220 -8.90253 -7.87568 -5.12548 1.46790 1.48318 1.56870 1.65787 1.82074 2.12914 2.18618 2.59384 3.37720 3.44553 3.50531 3.73564 3.87584 3.92862 3.94450 4.17030 4.18915 4.24604 4.30492 4.37564 4.38833 4.42807 4.49006 4.52228 4.58987 4.63169 4.65821 4.72643 4.75556 4.76951 4.78124 4.84364 4.87954 4.89378 4.97063 5.01069 5.09118 5.12786 5.13988 5.17648 5.26988 5.31347 5.37489 5.58251 5.63255 5.64230 5.68507 5.72425 6.18285 6.34665 6.56641 7.28944 7.38043 7.41828 8.14578 8.42478 9.35983 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.002602 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.830711 B =10757.641704 C =11833.372476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.186 3.814 5 H 0.029 0.971 6 C -0.117 4.117 7 C 0.134 3.866 8 N -0.621 5.621 9 C 0.073 3.927 10 C 0.495 3.505 11 O -0.569 6.569 12 C -0.112 4.112 13 C -0.109 4.109 14 H 0.100 0.900 15 C -0.114 4.114 16 C 0.097 3.903 17 N -0.633 5.633 18 C 0.093 3.907 19 C 0.497 3.503 20 O -0.564 6.564 21 N -0.724 5.724 22 C -0.213 4.213 23 H 0.069 0.931 24 C -0.073 4.073 25 N -0.966 5.966 26 Si 0.957 3.043 27 H -0.272 1.272 28 H -0.296 1.296 29 H -0.296 1.296 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.038 0.962 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.108 0.892 45 H 0.141 0.859 46 H 0.105 0.895 47 H 0.120 0.880 48 H 0.107 0.893 49 H 0.081 0.919 50 H 0.053 0.947 51 H 0.050 0.950 52 H 0.105 0.895 53 H 0.374 0.626 54 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.192 -22.499 3.020 30.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 C -0.191 4.191 4 C 0.076 3.924 5 H 0.047 0.953 6 C -0.156 4.156 7 C 0.010 3.990 8 N -0.354 5.354 9 C -0.069 4.069 10 C 0.285 3.715 11 O -0.447 6.447 12 C -0.152 4.152 13 C -0.131 4.131 14 H 0.118 0.882 15 C -0.151 4.151 16 C -0.024 4.024 17 N -0.368 5.368 18 C -0.049 4.049 19 C 0.285 3.715 20 O -0.441 6.441 21 N -0.364 5.364 22 C -0.345 4.345 23 H 0.087 0.913 24 C -0.265 4.265 25 N -0.618 5.618 26 Si 0.788 3.212 27 H -0.197 1.197 28 H -0.223 1.223 29 H -0.224 1.224 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.117 0.883 43 H 0.084 0.916 44 H 0.126 0.874 45 H 0.159 0.841 46 H 0.124 0.876 47 H 0.138 0.862 48 H 0.125 0.875 49 H 0.099 0.901 50 H 0.072 0.928 51 H 0.069 0.931 52 H 0.123 0.877 53 H 0.206 0.794 54 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -20.531 -21.310 3.003 29.743 hybrid contribution 1.002 1.284 0.044 1.629 sum -19.529 -20.026 3.048 28.138 Atomic orbital electron populations 1.21800 0.94925 1.01167 1.01432 1.21627 0.95040 0.96854 0.99100 1.21740 1.01820 0.95640 0.99933 1.20305 0.83659 0.93348 0.95045 0.95296 1.21974 1.00142 0.95844 0.97615 1.21117 0.98728 0.81844 0.97270 1.48056 1.17100 1.08479 1.61797 1.22031 0.95432 0.89765 0.99683 1.21406 0.80424 0.92701 0.76996 1.90710 1.56057 1.50287 1.47652 1.21646 0.96277 0.92536 1.04743 1.21790 0.92912 0.99212 0.99219 0.88162 1.22783 0.93808 0.92363 1.06150 1.22395 0.97929 0.86775 0.95347 1.48435 1.17049 1.24643 1.46626 1.21611 0.86674 1.02560 0.94067 1.21480 0.84388 0.83738 0.81864 1.90766 1.79983 1.23691 1.49699 1.42521 1.00433 1.20027 1.73432 1.19475 0.89001 0.96390 1.29642 0.91262 1.25324 0.97302 1.00142 1.03769 1.69790 1.06297 1.31539 1.54173 0.85295 0.78766 0.79909 0.77231 1.19683 1.22332 1.22365 0.93565 0.91869 0.93224 0.92775 0.92816 0.92879 0.94272 0.92197 0.92135 0.90888 0.93163 0.90887 0.88296 0.91593 0.87428 0.84149 0.87605 0.86159 0.87501 0.90051 0.92839 0.93090 0.87668 0.79371 0.94319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 8.85 71.98 0.64 -4.00 16 2 C -0.11 -4.12 2.69 -10.79 -0.03 -4.15 16 3 C -0.13 -5.38 8.26 71.98 0.59 -4.78 16 4 C 0.19 8.00 2.02 44.99 0.09 8.09 16 5 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 6 C -0.12 -4.50 4.86 30.59 0.15 -4.35 16 7 C 0.13 5.06 5.29 86.38 0.46 5.52 16 8 N -0.62 -18.65 2.87 -846.77 -2.43 -21.08 16 9 C 0.07 1.48 10.24 127.77 1.31 2.79 16 10 C 0.50 15.22 7.14 87.66 0.63 15.85 16 11 O -0.57 -23.40 13.63 17.44 0.24 -23.16 16 12 C -0.11 -1.98 3.64 29.85 0.11 -1.87 16 13 C -0.11 -1.94 2.54 -10.80 -0.03 -1.97 16 14 H 0.10 2.09 7.90 -2.38 -0.02 2.08 16 15 C -0.11 -0.65 6.70 31.65 0.21 -0.44 16 16 C 0.10 0.69 7.35 86.83 0.64 1.32 16 17 N -0.63 -10.97 3.33 -842.89 -2.81 -13.78 16 18 C 0.09 1.36 10.96 127.77 1.40 2.76 16 19 C 0.50 13.03 7.29 87.90 0.64 13.67 16 20 O -0.56 -21.80 15.20 17.42 0.26 -21.54 16 21 N -0.72 -36.38 4.45 -322.94 -1.44 -37.82 16 22 C -0.21 -11.74 7.57 84.03 0.64 -11.11 16 23 H 0.07 3.80 7.39 -2.91 -0.02 3.78 16 24 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 25 N -0.97 -58.35 13.06 21.65 0.28 -58.06 16 26 Si 0.96 46.98 29.55 68.60 2.03 49.01 16 27 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 28 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 29 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.05 1.72 6.32 -2.39 -0.02 1.70 16 33 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.05 2.50 6.01 -2.38 -0.01 2.49 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 2.43 6.17 -2.39 -0.01 2.41 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.07 2.96 7.68 -2.39 -0.02 2.94 16 40 H 0.05 2.15 7.42 -2.39 -0.02 2.13 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.10 1.32 6.44 -2.39 -0.02 1.30 16 43 H 0.07 1.50 8.07 -2.39 -0.02 1.48 16 44 H 0.11 1.60 7.38 -2.38 -0.02 1.58 16 45 H 0.14 1.35 8.11 -2.39 -0.02 1.33 16 46 H 0.11 0.23 7.91 -2.39 -0.02 0.21 16 47 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 49 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 50 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.05 0.99 7.93 -2.39 -0.02 0.97 16 52 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 53 H 0.37 19.91 7.80 -92.70 -0.72 19.18 16 54 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -83.51 420.96 4.19 -79.33 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: 0.14 Total: 33.51 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 7.91 Total: 13.59 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -6.40 Total: -130.74 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: 0.50 Total: -44.70 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -83.51 4.19 -79.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506383320.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.398 kcal (2) G-P(sol) polarization free energy of solvation -83.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds