Wall clock time and date at job start Sat Apr 11 2020 05:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47308 * 2 1 4 4 C 1.52992 * 109.46954 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47615 * 54.99608 * 4 3 2 6 6 C 1.52999 * 109.47179 * 174.99911 * 4 3 2 7 7 N 1.46502 * 109.47024 * 294.99386 * 4 3 2 8 8 C 1.46768 * 124.34599 * 120.00438 * 7 4 3 9 9 C 1.54485 * 105.47396 * 162.96540 * 8 7 4 10 10 H 1.08991 * 110.96954 * 143.56869 * 9 8 7 11 11 C 1.50697 * 110.96641 * 267.29556 * 9 8 7 12 12 O 1.21287 * 120.00338 * 356.90808 * 11 9 8 13 13 N 1.34779 * 120.00263 * 176.90853 * 11 9 8 14 14 C 1.46496 * 120.00313 * 180.02562 * 13 11 9 15 15 C 1.53000 * 109.46835 * 180.02562 * 14 13 11 16 16 N 1.46504 * 109.46990 * 179.97438 * 15 14 13 17 17 C 1.36941 * 120.00066 * 270.00225 * 16 15 14 18 18 H 1.07991 * 120.00090 * 146.14412 * 17 16 15 19 19 C 1.38817 * 119.99769 * 326.13949 * 17 16 15 20 20 N 1.31621 * 120.00001 * 336.90552 * 19 17 16 21 21 Si 1.86797 * 119.99819 * 156.90126 * 19 17 16 22 22 H 1.48508 * 109.46756 * 90.00479 * 21 19 17 23 23 H 1.48497 * 109.47068 * 209.99989 * 21 19 17 24 24 H 1.48498 * 109.47460 * 330.00608 * 21 19 17 25 25 C 1.46501 * 120.00250 * 89.99458 * 16 15 14 26 26 C 1.52998 * 109.46848 * 90.32514 * 25 16 15 27 27 C 1.54629 * 101.79605 * 25.43185 * 9 8 7 28 28 C 1.34413 * 124.35480 * 299.97997 * 7 4 3 29 29 O 1.21286 * 124.93538 * 0.38622 * 28 7 4 30 30 H 1.09000 * 109.47481 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47050 * 300.00538 * 1 2 3 32 32 H 1.09000 * 109.46870 * 60.00290 * 1 2 3 33 33 H 1.08995 * 109.47037 * 239.99264 * 2 1 3 34 34 H 1.09005 * 109.46725 * 120.00158 * 2 1 3 35 35 H 1.09001 * 109.47033 * 59.99890 * 3 2 1 36 36 H 1.09006 * 109.46653 * 300.00019 * 3 2 1 37 37 H 1.09003 * 109.47603 * 179.97438 * 6 4 3 38 38 H 1.09005 * 109.47176 * 299.99884 * 6 4 3 39 39 H 1.09004 * 109.47095 * 59.99378 * 6 4 3 40 40 H 1.08995 * 110.24656 * 43.96194 * 8 7 4 41 41 H 1.09004 * 110.31804 * 281.99981 * 8 7 4 42 42 H 0.97001 * 119.99318 * 359.97438 * 13 11 9 43 43 H 1.08999 * 109.47429 * 60.00125 * 14 13 11 44 44 H 1.09003 * 109.47102 * 299.99896 * 14 13 11 45 45 H 1.09001 * 109.47489 * 60.00190 * 15 14 13 46 46 H 1.08999 * 109.47463 * 299.99550 * 15 14 13 47 47 H 0.96990 * 119.99853 * 179.97438 * 20 19 17 48 48 H 1.08995 * 109.47348 * 210.32550 * 25 16 15 49 49 H 1.09006 * 109.46887 * 330.33069 * 25 16 15 50 50 H 1.09006 * 109.47428 * 60.00421 * 26 25 16 51 51 H 1.09005 * 109.47561 * 180.02562 * 26 25 16 52 52 H 1.09006 * 109.47403 * 300.00539 * 26 25 16 53 53 H 1.08993 * 110.48856 * 93.86487 * 27 9 8 54 54 H 1.09005 * 110.48515 * 216.50978 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8530 -0.8427 6 6 4.0800 2.8794 -0.1264 7 7 4.0588 0.8586 1.2510 8 6 4.9061 -0.3371 1.3315 9 6 5.5139 -0.3167 2.7517 10 1 5.5985 -1.3259 3.1543 11 6 6.8519 0.3766 2.7556 12 8 7.3310 0.7762 1.7155 13 7 7.5163 0.5527 3.9150 14 6 8.8167 1.2271 3.9189 15 6 9.3514 1.2955 5.3509 16 7 10.6522 1.9694 5.3548 17 6 11.8016 1.2403 5.2042 18 1 12.6451 1.6641 4.6798 19 6 11.8823 -0.0437 5.7258 20 7 11.0954 -0.4015 6.7183 21 14 13.1076 -1.2635 5.0188 22 1 14.3949 -1.1528 5.7511 23 1 12.5733 -2.6416 5.1627 24 1 13.3290 -0.9660 3.5809 25 6 10.7235 3.4234 5.5195 26 6 10.8382 3.7630 7.0069 27 6 4.4627 0.5047 3.5336 28 6 3.7894 1.3493 2.4729 29 8 3.1066 2.3272 2.6937 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8901 37 1 5.1701 2.8794 -0.1264 38 1 3.7164 3.3139 -1.0576 39 1 3.7170 3.4688 0.7156 40 1 5.6963 -0.2906 0.5823 41 1 4.3062 -1.2363 1.1910 42 1 7.1329 0.2335 4.7469 43 1 8.7036 2.2369 3.5244 44 1 9.5168 0.6701 3.2963 45 1 9.4647 0.2856 5.7450 46 1 8.6515 1.8523 5.9739 47 1 11.1516 -1.2987 7.0825 48 1 11.5963 3.8066 4.9910 49 1 9.8218 3.8799 5.1111 50 1 11.7399 3.3064 7.4154 51 1 10.8908 4.8448 7.1297 52 1 9.9654 3.3796 7.5356 53 1 3.7396 -0.1567 4.0107 54 1 4.9486 1.1387 4.2753 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567353893.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:36 Heat of formation + Delta-G solvation = -87.867647 kcal Electronic energy + Delta-G solvation = -30800.241871 eV Core-core repulsion = 26771.188047 eV Total energy + Delta-G solvation = -4029.053824 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.02000 -40.29151 -38.12158 -37.59336 -36.62796 -35.66139 -33.80756 -33.76972 -31.69235 -30.78400 -29.17325 -28.62544 -27.60829 -26.08394 -24.68213 -23.51206 -23.38403 -22.27342 -21.84343 -21.07859 -19.89752 -18.92363 -18.27554 -17.82060 -17.07955 -16.89631 -16.65779 -16.36702 -16.11074 -15.80386 -15.61030 -15.49852 -14.98867 -14.85449 -14.80921 -14.47962 -14.42720 -14.18047 -13.91699 -13.74827 -13.58799 -13.44944 -13.15245 -13.07911 -12.86358 -12.80863 -12.74372 -12.63896 -12.55907 -12.45686 -12.40183 -12.25454 -11.95827 -11.90062 -11.72879 -11.63027 -11.54625 -11.54191 -10.87399 -10.62271 -10.55732 -10.02878 -9.64632 -8.64432 -7.85442 -5.41856 1.44559 1.48626 1.56981 1.57739 1.61963 2.03756 2.19835 2.52612 3.22790 3.28934 3.35241 3.62225 3.74857 3.83393 3.94065 4.03061 4.11078 4.31025 4.35088 4.36655 4.42164 4.43420 4.47911 4.56023 4.60427 4.66649 4.71129 4.74936 4.77033 4.81840 4.83982 4.86176 4.88859 4.92278 4.99068 5.02900 5.03753 5.20135 5.24027 5.25946 5.27783 5.32491 5.43480 5.45226 5.56073 5.66783 5.71639 5.80512 6.19095 6.44155 6.61288 7.14152 7.18940 7.27804 7.83469 8.34126 9.11941 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017605 B = 0.002425 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.065217 B =11545.260877 C =12168.319838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.128 4.128 4 C 0.153 3.847 5 H 0.108 0.892 6 C -0.163 4.163 7 N -0.606 5.606 8 C 0.115 3.885 9 C -0.112 4.112 10 H 0.168 0.832 11 C 0.509 3.491 12 O -0.583 6.583 13 N -0.710 5.710 14 C 0.122 3.878 15 C 0.141 3.859 16 N -0.598 5.598 17 C -0.268 4.268 18 H 0.053 0.947 19 C -0.031 4.031 20 N -0.908 5.908 21 Si 0.950 3.050 22 H -0.285 1.285 23 H -0.286 1.286 24 H -0.280 1.280 25 C 0.135 3.865 26 C -0.150 4.150 27 C -0.140 4.140 28 C 0.506 3.494 29 O -0.574 6.574 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.081 0.919 41 H 0.119 0.881 42 H 0.413 0.587 43 H 0.037 0.963 44 H 0.033 0.967 45 H 0.085 0.915 46 H 0.039 0.961 47 H 0.254 0.746 48 H 0.043 0.957 49 H 0.051 0.949 50 H 0.029 0.971 51 H 0.065 0.935 52 H 0.036 0.964 53 H 0.152 0.848 54 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.121 -3.471 -10.626 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.166 4.166 4 C 0.051 3.949 5 H 0.126 0.874 6 C -0.222 4.222 7 N -0.338 5.338 8 C -0.008 4.008 9 C -0.134 4.134 10 H 0.185 0.815 11 C 0.296 3.704 12 O -0.463 6.463 13 N -0.362 5.362 14 C -0.004 4.004 15 C 0.014 3.986 16 N -0.319 5.319 17 C -0.398 4.398 18 H 0.071 0.929 19 C -0.229 4.229 20 N -0.552 5.552 21 Si 0.779 3.221 22 H -0.212 1.212 23 H -0.212 1.212 24 H -0.206 1.206 25 C 0.010 3.990 26 C -0.209 4.209 27 C -0.180 4.180 28 C 0.294 3.706 29 O -0.454 6.454 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.061 0.939 40 H 0.100 0.900 41 H 0.137 0.863 42 H 0.250 0.750 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.102 0.898 46 H 0.058 0.942 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.069 0.931 50 H 0.048 0.952 51 H 0.084 0.916 52 H 0.055 0.945 53 H 0.169 0.831 54 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.122 -2.774 -11.231 23.211 hybrid contribution 1.014 -0.375 0.302 1.122 sum -19.108 -3.149 -10.929 22.237 Atomic orbital electron populations 1.21749 0.95573 1.01977 1.01486 1.21459 0.96058 0.95559 1.02286 1.21961 0.93562 0.98428 1.02686 1.21127 0.94385 0.93997 0.85386 0.87411 1.22118 1.00416 0.96996 1.02621 1.48439 1.50359 1.29012 1.06015 1.22215 0.94132 0.88289 0.96127 1.22396 0.89682 1.03047 0.98245 0.81485 1.21072 0.87367 0.78972 0.83037 1.90679 1.70325 1.52073 1.33218 1.45916 1.20758 1.59278 1.10231 1.21764 0.83021 0.94839 1.00819 1.20972 0.85423 1.00932 0.91295 1.43952 1.01895 1.02269 1.83821 1.19221 0.94237 0.97600 1.28785 0.92895 1.25626 1.00234 1.01059 0.95993 1.70057 1.42446 1.19323 1.23410 0.85561 0.79197 0.78916 0.78456 1.21151 1.21169 1.20563 1.21044 0.99121 0.84251 0.94632 1.22110 1.00239 0.99849 0.98713 1.22456 0.98776 0.99667 0.97095 1.21312 0.79800 0.83970 0.85484 1.90667 1.41879 1.28285 1.84563 0.91885 0.93967 0.92311 0.90724 0.92496 0.93054 0.89819 0.94062 0.89514 0.93893 0.90027 0.86292 0.75036 0.94500 0.94844 0.89767 0.94213 0.93677 0.93888 0.93070 0.95205 0.91576 0.94465 0.83076 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.15 16 2 C -0.12 -1.52 5.82 30.60 0.18 -1.34 16 3 C -0.13 -2.17 4.64 30.59 0.14 -2.03 16 4 C 0.15 2.89 2.86 44.99 0.13 3.02 16 5 H 0.11 1.59 8.07 -2.38 -0.02 1.57 16 6 C -0.16 -3.73 9.20 71.98 0.66 -3.07 16 7 N -0.61 -12.37 2.28 -793.89 -1.81 -14.18 16 8 C 0.11 1.83 6.66 86.83 0.58 2.41 16 9 C -0.11 -1.87 3.54 -10.48 -0.04 -1.90 16 10 H 0.17 1.44 8.14 -2.39 -0.02 1.42 16 11 C 0.51 14.55 7.12 87.66 0.62 15.17 16 12 O -0.58 -21.94 15.51 -3.05 -0.05 -21.99 16 13 N -0.71 -21.30 5.37 -463.06 -2.49 -23.79 16 14 C 0.12 4.85 6.00 86.38 0.52 5.37 16 15 C 0.14 6.11 5.41 86.38 0.47 6.57 16 16 N -0.60 -28.78 2.45 -701.99 -1.72 -30.50 16 17 C -0.27 -14.33 9.49 84.03 0.80 -13.53 16 18 H 0.05 2.87 7.93 -2.92 -0.02 2.85 16 19 C -0.03 -1.67 4.95 84.86 0.42 -1.25 16 20 N -0.91 -49.54 11.31 21.65 0.24 -49.29 16 21 Si 0.95 43.36 29.61 68.60 2.03 45.40 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 23 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 25 C 0.13 5.55 6.39 86.38 0.55 6.11 16 26 C -0.15 -5.74 10.24 71.98 0.74 -5.00 16 27 C -0.14 -2.36 6.40 30.62 0.20 -2.16 16 28 C 0.51 12.47 7.40 87.93 0.65 13.12 16 29 O -0.57 -18.73 15.07 -3.05 -0.05 -18.78 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.79 7.75 -2.38 -0.02 0.78 16 35 H 0.05 1.20 6.63 -2.39 -0.02 1.18 16 36 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.04 1.21 6.80 -2.38 -0.02 1.20 16 40 H 0.08 1.64 6.98 -2.39 -0.02 1.62 16 41 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.41 9.88 8.47 -92.71 -0.79 9.10 16 43 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.08 4.10 5.31 -2.39 -0.01 4.08 16 46 H 0.04 1.60 8.07 -2.39 -0.02 1.58 16 47 H 0.25 13.34 8.31 -92.72 -0.77 12.57 16 48 H 0.04 1.75 8.04 -2.39 -0.02 1.73 16 49 H 0.05 1.91 8.07 -2.38 -0.02 1.89 16 50 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 51 H 0.07 2.05 8.14 -2.38 -0.02 2.04 16 52 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 53 H 0.15 1.45 8.14 -2.39 -0.02 1.44 16 54 H 0.10 1.88 7.75 -2.38 -0.02 1.86 16 Total: -1.00 -72.78 429.26 3.56 -69.21 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.07 Total: 23.61 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 7.33 Total: 20.31 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -5.78 Total: -117.76 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -0.09 Total: -40.77 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.40 kcal Total: -72.78 3.56 -69.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567353893.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.656 kcal (2) G-P(sol) polarization free energy of solvation -72.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds