Wall clock time and date at job start Sat Apr 11 2020 05:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47528 * 2 1 4 4 C 1.52991 * 109.47335 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46949 * 304.99838 * 4 3 2 6 6 C 1.53002 * 109.47026 * 185.00162 * 4 3 2 7 7 N 1.46500 * 109.47451 * 64.99890 * 4 3 2 8 8 C 1.46763 * 124.34924 * 239.72706 * 7 4 3 9 9 C 1.54655 * 105.38042 * 162.85070 * 8 7 4 10 10 H 1.08996 * 111.19722 * 267.58954 * 9 8 7 11 11 C 1.50700 * 110.85313 * 143.79075 * 9 8 7 12 12 O 1.21288 * 120.00076 * 6.32886 * 11 9 8 13 13 N 1.34780 * 120.00362 * 186.33313 * 11 9 8 14 14 C 1.46503 * 119.99977 * 180.02562 * 13 11 9 15 15 C 1.53004 * 109.46793 * 179.97438 * 14 13 11 16 16 N 1.46495 * 109.47145 * 179.97438 * 15 14 13 17 17 C 1.36943 * 119.99718 * 90.00002 * 16 15 14 18 18 H 1.07999 * 119.99822 * 8.64538 * 17 16 15 19 19 C 1.38808 * 120.00035 * 188.64143 * 17 16 15 20 20 N 1.31629 * 120.00280 * 24.60283 * 19 17 16 21 21 Si 1.86800 * 120.00057 * 204.60657 * 19 17 16 22 22 H 1.48500 * 109.47176 * 85.02647 * 21 19 17 23 23 H 1.48509 * 109.46974 * 205.02409 * 21 19 17 24 24 H 1.48499 * 109.46995 * 325.02147 * 21 19 17 25 25 C 1.46501 * 120.00556 * 270.00473 * 16 15 14 26 26 C 1.52997 * 109.47233 * 84.28443 * 25 16 15 27 27 C 1.54630 * 101.68449 * 25.77073 * 9 8 7 28 28 C 1.34418 * 124.34726 * 60.02617 * 7 4 3 29 29 O 1.21279 * 124.94577 * 0.42738 * 28 7 4 30 30 H 1.09004 * 109.47036 * 59.99415 * 1 2 3 31 31 H 1.08991 * 109.47453 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46690 * 300.00125 * 1 2 3 33 33 H 1.09004 * 109.47422 * 120.00207 * 2 1 3 34 34 H 1.09002 * 109.47097 * 240.00211 * 2 1 3 35 35 H 1.09004 * 109.46938 * 300.00503 * 3 2 1 36 36 H 1.08996 * 109.46969 * 59.99635 * 3 2 1 37 37 H 1.09002 * 109.46903 * 179.97438 * 6 4 3 38 38 H 1.09001 * 109.46992 * 299.99650 * 6 4 3 39 39 H 1.08993 * 109.47496 * 59.99915 * 6 4 3 40 40 H 1.08998 * 110.24456 * 281.98385 * 8 7 4 41 41 H 1.08998 * 110.24602 * 43.97870 * 8 7 4 42 42 H 0.97001 * 119.99803 * 0.02562 * 13 11 9 43 43 H 1.08997 * 109.46922 * 299.99589 * 14 13 11 44 44 H 1.08992 * 109.47271 * 60.00147 * 14 13 11 45 45 H 1.08998 * 109.47549 * 300.00360 * 15 14 13 46 46 H 1.09008 * 109.46733 * 60.00265 * 15 14 13 47 47 H 0.96994 * 120.00129 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.47114 * 204.28832 * 25 16 15 49 49 H 1.09006 * 109.46860 * 324.29002 * 25 16 15 50 50 H 1.09004 * 109.47161 * 180.02562 * 26 25 16 51 51 H 1.09000 * 109.47388 * 300.00220 * 26 25 16 52 52 H 1.08997 * 109.47312 * 60.00407 * 26 25 16 53 53 H 1.09004 * 110.48514 * 216.30827 * 27 9 8 54 54 H 1.08997 * 110.49151 * 93.66443 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8529 0.8410 6 6 4.0801 2.8794 0.1251 7 7 4.0579 0.8589 -1.2527 8 6 4.9098 -0.3335 -1.3340 9 6 4.7993 -0.8174 -2.7987 10 1 4.0058 -1.5562 -2.9109 11 6 6.1163 -1.3672 -3.2828 12 8 7.0433 -1.4893 -2.5101 13 7 6.2643 -1.7231 -4.5743 14 6 7.5445 -2.2581 -5.0446 15 6 7.4449 -2.5807 -6.5370 16 7 8.7252 -3.1150 -7.0075 17 6 8.9612 -4.4633 -6.9658 18 1 8.1600 -5.1444 -6.7196 19 6 10.2301 -4.9546 -7.2400 20 7 11.2851 -4.1872 -7.0649 21 14 10.4407 -6.7049 -7.8577 22 1 10.2666 -6.7339 -9.3322 23 1 11.7997 -7.1924 -7.5100 24 1 9.4233 -7.5800 -7.2218 25 6 9.7531 -2.2071 -7.5227 26 6 10.5667 -1.6434 -6.3560 27 6 4.4428 0.4942 -3.5359 28 6 3.7875 1.3500 -2.4744 29 8 3.1162 2.3360 -2.6937 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 5.1701 2.8793 0.1251 38 1 3.7165 3.4690 -0.7165 39 1 3.7172 3.3136 1.0566 40 1 5.9418 -0.0766 -1.0954 41 1 4.5456 -1.1042 -0.6548 42 1 5.5231 -1.6251 -5.1923 43 1 8.3284 -1.5181 -4.8840 44 1 7.7836 -3.1666 -4.4921 45 1 6.6609 -3.3208 -6.6973 46 1 7.2055 -1.6722 -7.0898 47 1 12.1717 -4.5304 -7.2569 48 1 10.4140 -2.7517 -8.1970 49 1 9.2772 -1.3886 -8.0628 50 1 11.3312 -0.9675 -6.7393 51 1 9.9057 -1.0988 -5.6817 52 1 11.0425 -2.4618 -5.8159 53 1 3.7459 0.2967 -4.3505 54 1 5.3443 0.9774 -3.9126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567353894.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:39 Heat of formation + Delta-G solvation = -75.917826 kcal Electronic energy + Delta-G solvation = -30389.824438 eV Core-core repulsion = 26361.288797 eV Total energy + Delta-G solvation = -4028.535641 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.97472 -40.41443 -38.21784 -37.61989 -36.64554 -35.79971 -33.86206 -33.23874 -31.60543 -30.97658 -29.21215 -28.64061 -27.59648 -26.04735 -24.51177 -23.47271 -23.09379 -22.27370 -22.17166 -21.04101 -19.90604 -18.75135 -18.52976 -17.72878 -17.09239 -17.00720 -16.62929 -16.34827 -16.17140 -15.70001 -15.59751 -15.28889 -14.95422 -14.78247 -14.72826 -14.58564 -14.56551 -13.87819 -13.84074 -13.78190 -13.71058 -13.55914 -13.25047 -13.03099 -12.87398 -12.85910 -12.67281 -12.65592 -12.43058 -12.32665 -12.25441 -12.16587 -11.90201 -11.79233 -11.62654 -11.55867 -11.53712 -11.32642 -11.03703 -10.59161 -10.35785 -10.00759 -9.68226 -8.86583 -7.79196 -5.12431 1.50651 1.53663 1.54115 1.59754 1.61204 1.87751 2.24744 2.58367 3.19470 3.30257 3.33660 3.69185 3.74553 3.87894 3.91470 4.04088 4.11039 4.20491 4.28351 4.32846 4.39611 4.42018 4.53618 4.59343 4.62006 4.71017 4.73884 4.74107 4.75017 4.81170 4.91388 4.94152 4.97601 5.00416 5.03584 5.14274 5.16714 5.23132 5.23784 5.26888 5.31741 5.35382 5.45294 5.52570 5.65437 5.69040 5.82107 6.13065 6.15932 6.37622 6.60912 7.15472 7.22478 7.29550 7.93590 8.32443 9.22508 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021625 B = 0.002042 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.499104 B =13712.024970 C =14161.189072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.149 3.851 5 H 0.109 0.891 6 C -0.165 4.165 7 N -0.607 5.607 8 C 0.118 3.882 9 C -0.106 4.106 10 H 0.152 0.848 11 C 0.519 3.481 12 O -0.584 6.584 13 N -0.706 5.706 14 C 0.111 3.889 15 C 0.144 3.856 16 N -0.607 5.607 17 C -0.258 4.258 18 H 0.076 0.924 19 C -0.053 4.053 20 N -0.917 5.917 21 Si 0.957 3.043 22 H -0.288 1.288 23 H -0.303 1.303 24 H -0.275 1.275 25 C 0.168 3.832 26 C -0.138 4.138 27 C -0.142 4.142 28 C 0.516 3.484 29 O -0.565 6.565 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.417 0.583 43 H 0.042 0.958 44 H 0.031 0.969 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.245 0.755 48 H 0.059 0.941 49 H 0.030 0.970 50 H 0.032 0.968 51 H 0.022 0.978 52 H 0.054 0.946 53 H 0.135 0.865 54 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.668 10.063 12.775 26.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.167 4.167 4 C 0.048 3.952 5 H 0.127 0.873 6 C -0.223 4.223 7 N -0.340 5.340 8 C -0.005 4.005 9 C -0.127 4.127 10 H 0.169 0.831 11 C 0.306 3.694 12 O -0.464 6.464 13 N -0.359 5.359 14 C -0.016 4.016 15 C 0.017 3.983 16 N -0.329 5.329 17 C -0.387 4.387 18 H 0.094 0.906 19 C -0.248 4.248 20 N -0.564 5.564 21 Si 0.786 3.214 22 H -0.215 1.215 23 H -0.230 1.230 24 H -0.200 1.200 25 C 0.043 3.957 26 C -0.198 4.198 27 C -0.182 4.182 28 C 0.304 3.696 29 O -0.444 6.444 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.123 0.877 42 H 0.254 0.746 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.055 0.945 48 H 0.077 0.923 49 H 0.048 0.952 50 H 0.051 0.949 51 H 0.041 0.959 52 H 0.073 0.927 53 H 0.153 0.847 54 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.216 10.450 13.226 26.321 hybrid contribution 0.671 -0.836 -0.467 1.169 sum -19.545 9.614 12.759 25.244 Atomic orbital electron populations 1.21748 0.95623 1.01869 1.01584 1.21477 0.96079 0.95955 1.02140 1.21970 0.93846 0.98036 1.02880 1.21209 0.94340 0.94584 0.85093 0.87283 1.22142 1.01026 0.96195 1.02908 1.48515 1.50058 1.29093 1.06339 1.22034 0.95351 0.87181 0.95887 1.22221 0.95885 0.98751 0.95866 0.83088 1.20684 0.89626 0.77089 0.82046 1.90731 1.43723 1.56060 1.55847 1.45900 1.15700 1.64065 1.10191 1.22133 0.84703 0.96777 0.98020 1.21108 0.88449 0.98491 0.90285 1.44408 1.13770 1.03332 1.71375 1.19534 0.94425 0.83456 1.41330 0.90579 1.25407 0.95340 1.00956 1.03075 1.70329 0.97288 1.37214 1.51542 0.85434 0.76188 0.81251 0.78478 1.21525 1.22975 1.19967 1.20736 0.89779 0.90448 0.94785 1.22231 0.98578 0.99223 0.99737 1.22396 1.03556 0.93694 0.98526 1.21028 0.79269 0.84193 0.85073 1.90684 1.41418 1.27892 1.84435 0.93791 0.92212 0.92221 0.90938 0.92722 0.92837 0.89625 0.92899 0.93484 0.89544 0.91057 0.87660 0.74565 0.93928 0.94999 0.91709 0.91092 0.94519 0.92322 0.95184 0.94916 0.95860 0.92689 0.84665 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.12 -1.41 5.82 30.59 0.18 -1.24 16 3 C -0.13 -1.80 4.64 30.59 0.14 -1.66 16 4 C 0.15 2.16 2.86 44.99 0.13 2.29 16 5 H 0.11 1.15 8.07 -2.39 -0.02 1.13 16 6 C -0.16 -2.64 9.20 71.98 0.66 -1.98 16 7 N -0.61 -10.21 2.28 -793.71 -1.81 -12.02 16 8 C 0.12 1.88 6.61 86.89 0.57 2.45 16 9 C -0.11 -1.57 3.56 -10.42 -0.04 -1.61 16 10 H 0.15 1.32 8.14 -2.39 -0.02 1.31 16 11 C 0.52 12.72 7.07 87.66 0.62 13.34 16 12 O -0.58 -20.34 15.57 -3.05 -0.05 -20.39 16 13 N -0.71 -16.73 5.51 -463.05 -2.55 -19.28 16 14 C 0.11 3.82 5.88 86.38 0.51 4.33 16 15 C 0.14 4.97 5.82 86.38 0.50 5.47 16 16 N -0.61 -27.91 2.54 -701.99 -1.78 -29.69 16 17 C -0.26 -13.28 9.70 84.03 0.82 -12.46 16 18 H 0.08 3.81 7.93 -2.91 -0.02 3.79 16 19 C -0.05 -2.82 4.91 84.86 0.42 -2.40 16 20 N -0.92 -51.28 8.54 21.65 0.18 -51.10 16 21 Si 0.96 43.73 29.62 68.60 2.03 45.76 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 25 C 0.17 7.73 5.64 86.38 0.49 8.21 16 26 C -0.14 -6.33 9.58 71.98 0.69 -5.64 16 27 C -0.14 -2.12 6.37 30.59 0.19 -1.93 16 28 C 0.52 10.60 7.39 87.90 0.65 11.25 16 29 O -0.56 -15.64 15.07 -3.03 -0.05 -15.68 16 30 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 0.73 7.75 -2.39 -0.02 0.71 16 35 H 0.05 1.07 6.65 -2.39 -0.02 1.05 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 1.01 6.77 -2.39 -0.02 0.99 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.48 7.07 -2.39 -0.02 1.46 16 41 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.42 6.50 8.47 -92.71 -0.79 5.72 16 43 H 0.04 1.69 5.93 -2.39 -0.01 1.68 16 44 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.06 2.06 8.03 -2.39 -0.02 2.04 16 46 H 0.07 2.08 7.95 -2.38 -0.02 2.07 16 47 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 48 H 0.06 3.08 5.87 -2.39 -0.01 3.06 16 49 H 0.03 1.21 7.97 -2.38 -0.02 1.19 16 50 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 51 H 0.02 0.98 5.98 -2.39 -0.01 0.97 16 52 H 0.05 2.94 6.28 -2.39 -0.02 2.92 16 53 H 0.14 1.36 8.14 -2.38 -0.02 1.34 16 54 H 0.10 1.74 7.89 -2.39 -0.02 1.72 16 Total: -1.00 -70.44 420.04 3.32 -67.13 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.09 Total: 17.86 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: 7.24 Total: 17.41 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -5.96 Total: -112.08 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -0.09 Total: -36.08 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -70.44 3.32 -67.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567353894.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.789 kcal (2) G-P(sol) polarization free energy of solvation -70.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds