Wall clock time and date at job start Sat Apr 11 2020 05:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47442 * 2 1 4 4 C 1.53003 * 109.47442 * 240.00108 * 2 1 3 5 5 C 1.53001 * 109.47139 * 293.55922 * 4 2 1 6 6 H 1.09006 * 109.47112 * 54.67685 * 5 4 2 7 7 C 1.50697 * 109.47103 * 294.67679 * 5 4 2 8 8 N 1.34773 * 120.00180 * 152.63802 * 7 5 4 9 9 O 1.21281 * 119.99825 * 332.63010 * 7 5 4 10 10 C 1.50695 * 109.47169 * 174.67307 * 5 4 2 11 11 O 1.21283 * 120.00335 * 358.53504 * 10 5 4 12 12 N 1.34781 * 120.00314 * 178.53641 * 10 5 4 13 13 C 1.46497 * 120.00329 * 184.30404 * 12 10 5 14 14 H 1.09004 * 109.46956 * 325.00291 * 13 12 10 15 15 C 1.53001 * 109.47032 * 84.99786 * 13 12 10 16 16 C 1.53001 * 109.47398 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46764 * 300.00414 * 16 15 13 18 18 H 1.09003 * 109.47151 * 299.99117 * 17 16 15 19 19 C 1.53001 * 109.46764 * 179.97438 * 17 16 15 20 20 N 1.46503 * 109.47257 * 64.99735 * 19 17 16 21 21 C 1.36937 * 119.99911 * 180.02562 * 20 19 17 22 22 H 1.08007 * 119.99778 * 359.97438 * 21 20 19 23 23 C 1.38803 * 120.00058 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00118 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00000 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47406 * 89.99915 * 25 23 21 27 27 H 1.48501 * 109.47146 * 210.00090 * 25 23 21 28 28 H 1.48497 * 109.47112 * 329.99862 * 25 23 21 29 29 C 1.52992 * 109.47369 * 59.99782 * 17 16 15 30 30 C 1.52994 * 109.47175 * 204.99903 * 13 12 10 31 31 H 1.09004 * 109.47294 * 59.99950 * 1 2 3 32 32 H 1.09000 * 109.47439 * 300.00004 * 1 2 3 33 33 H 1.09000 * 109.47341 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47325 * 120.00572 * 2 1 3 35 35 H 1.09005 * 109.46391 * 55.08570 * 3 2 1 36 36 H 1.08996 * 109.46984 * 175.08388 * 3 2 1 37 37 H 1.08996 * 109.47171 * 295.09057 * 3 2 1 38 38 H 1.09008 * 109.46817 * 53.55450 * 4 2 1 39 39 H 1.08995 * 109.47321 * 173.55399 * 4 2 1 40 40 H 0.97002 * 119.99963 * 5.15586 * 8 7 5 41 41 H 0.96998 * 120.00194 * 185.16441 * 8 7 5 42 42 H 0.96997 * 119.99475 * 4.30657 * 12 10 5 43 43 H 1.09002 * 109.47356 * 300.00378 * 15 13 12 44 44 H 1.09006 * 109.46783 * 59.99891 * 15 13 12 45 45 H 1.08995 * 109.47139 * 180.02562 * 16 15 13 46 46 H 1.09003 * 109.46566 * 59.99889 * 16 15 13 47 47 H 1.09003 * 109.47185 * 185.00134 * 19 17 16 48 48 H 1.09001 * 109.47091 * 304.99464 * 19 17 16 49 49 H 0.96991 * 119.99632 * 0.02562 * 20 19 17 50 50 H 0.97001 * 120.00070 * 180.02562 * 24 23 21 51 51 H 1.09002 * 109.47224 * 179.97438 * 29 17 16 52 52 H 1.09005 * 109.47473 * 60.00107 * 29 17 16 53 53 H 1.09004 * 109.47495 * 300.00058 * 30 13 12 54 54 H 1.09004 * 109.47234 * 60.00253 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6665 -2.2029 -1.1710 6 1 0.5917 -2.2990 -1.0166 7 6 2.3986 -2.8455 -0.0212 8 7 1.8715 -3.9211 0.5965 9 8 3.4622 -2.3947 0.3482 10 6 2.0522 -2.8868 -2.4573 11 8 2.5501 -2.2464 -3.3589 12 7 1.8438 -4.2101 -2.6058 13 6 2.3040 -4.8927 -3.8176 14 1 2.2034 -4.2234 -4.6720 15 6 3.7719 -5.2912 -3.6521 16 6 4.2525 -6.0047 -4.9174 17 6 3.4065 -7.2584 -5.1484 18 1 3.5073 -7.9273 -4.2936 19 6 3.8866 -7.9715 -6.4140 20 7 5.2535 -8.4581 -6.2116 21 6 5.8961 -9.1321 -7.2157 22 1 5.3949 -9.3053 -8.1566 23 6 7.1910 -9.5936 -7.0238 24 7 7.8088 -10.2410 -7.9891 25 14 8.0569 -9.2960 -5.3956 26 1 7.7823 -10.4280 -4.4746 27 1 9.5201 -9.1887 -5.6255 28 1 7.5569 -8.0346 -4.7924 29 6 1.9387 -6.8598 -5.3138 30 6 1.4582 -6.1463 -4.0492 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 0.8899 35 1 1.6065 1.9810 0.8428 36 1 3.1264 1.4437 0.0881 37 1 1.7503 1.9303 -0.9307 38 1 1.5855 -0.2783 -2.1355 39 1 3.1238 -0.6224 -1.3088 40 1 1.0596 -4.3272 0.2547 41 1 2.3040 -4.2891 1.3829 42 1 1.3891 -4.7104 -1.9103 43 1 4.3746 -4.3980 -3.4871 44 1 3.8726 -5.9604 -2.7976 45 1 5.2981 -6.2889 -4.7993 46 1 4.1516 -5.3357 -5.7721 47 1 3.2289 -8.8140 -6.6281 48 1 3.8692 -7.2750 -7.2523 49 1 5.7034 -8.3029 -5.3665 50 1 8.7136 -10.5639 -7.8548 51 1 1.3360 -7.7530 -5.4788 52 1 1.8378 -6.1910 -6.1686 53 1 1.5588 -6.8156 -3.1947 54 1 0.4124 -5.8624 -4.1671 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570049325.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:30 Heat of formation + Delta-G solvation = -133.283590 kcal Electronic energy + Delta-G solvation = -30507.782059 eV Core-core repulsion = 26476.758852 eV Total energy + Delta-G solvation = -4031.023207 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.89153 -40.42218 -39.38071 -37.37294 -36.81351 -35.36923 -34.71474 -33.43470 -32.38171 -31.75249 -30.69806 -28.02263 -27.14185 -25.86573 -24.32676 -23.69121 -22.91797 -21.98343 -21.51484 -20.87285 -20.51038 -19.65869 -18.68419 -18.21116 -17.98772 -17.36181 -16.64372 -16.27912 -16.12845 -15.93904 -15.90682 -15.33546 -15.14837 -15.00852 -14.93781 -14.73568 -14.67467 -14.54211 -13.97169 -13.77139 -13.61359 -13.35578 -13.17779 -13.16850 -13.04205 -12.97725 -12.84398 -12.57879 -12.20061 -12.11149 -12.04259 -11.88260 -11.79117 -11.64579 -11.58310 -11.51190 -11.34724 -11.21708 -11.19824 -10.97177 -10.85803 -10.71516 -10.12838 -9.29236 -8.04828 -5.37219 1.16434 1.34107 1.37575 1.44755 1.55492 2.05679 2.45521 2.50913 3.26330 3.42581 3.53895 3.61224 3.69492 3.82874 3.88254 3.93114 4.05465 4.09780 4.13340 4.17390 4.34477 4.40076 4.43860 4.48931 4.54219 4.55337 4.73538 4.76507 4.79170 4.85480 4.92442 5.02007 5.04583 5.05792 5.06701 5.10157 5.11275 5.17826 5.23014 5.27831 5.28559 5.41913 5.44519 5.46970 5.49626 5.58627 5.74531 5.82334 6.19976 6.32887 6.41423 7.06744 7.10112 7.22780 7.84352 8.02866 9.16885 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018598 B = 0.002194 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.215786 B =12757.003105 C =13290.321294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.085 4.085 5 C -0.124 4.124 6 H 0.164 0.836 7 C 0.528 3.472 8 N -0.829 5.829 9 O -0.574 6.574 10 C 0.521 3.479 11 O -0.566 6.566 12 N -0.707 5.707 13 C 0.148 3.852 14 H 0.071 0.929 15 C -0.120 4.120 16 C -0.107 4.107 17 C -0.087 4.087 18 H 0.077 0.923 19 C 0.155 3.845 20 N -0.758 5.758 21 C -0.233 4.233 22 H 0.056 0.944 23 C -0.066 4.066 24 N -0.984 5.984 25 Si 0.954 3.046 26 H -0.273 1.273 27 H -0.296 1.296 28 H -0.256 1.256 29 C -0.103 4.103 30 C -0.110 4.110 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.040 0.960 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.419 0.581 41 H 0.413 0.587 42 H 0.414 0.586 43 H 0.037 0.963 44 H 0.074 0.926 45 H 0.042 0.958 46 H 0.053 0.947 47 H 0.029 0.971 48 H 0.017 0.983 49 H 0.365 0.635 50 H 0.258 0.742 51 H 0.085 0.915 52 H 0.063 0.937 53 H 0.088 0.912 54 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.613 17.764 23.501 39.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.123 4.123 5 C -0.149 4.149 6 H 0.182 0.818 7 C 0.311 3.689 8 N -0.395 5.395 9 O -0.452 6.452 10 C 0.306 3.694 11 O -0.444 6.444 12 N -0.359 5.359 13 C 0.044 3.956 14 H 0.090 0.910 15 C -0.159 4.159 16 C -0.145 4.145 17 C -0.105 4.105 18 H 0.096 0.904 19 C 0.029 3.971 20 N -0.404 5.404 21 C -0.364 4.364 22 H 0.074 0.926 23 C -0.258 4.258 24 N -0.634 5.634 25 Si 0.781 3.219 26 H -0.199 1.199 27 H -0.223 1.223 28 H -0.181 1.181 29 C -0.142 4.142 30 C -0.148 4.148 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.251 0.749 41 H 0.246 0.754 42 H 0.252 0.748 43 H 0.056 0.944 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.047 0.953 48 H 0.035 0.965 49 H 0.198 0.802 50 H 0.066 0.934 51 H 0.104 0.896 52 H 0.081 0.919 53 H 0.107 0.893 54 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -24.608 18.534 22.757 38.301 hybrid contribution 1.283 -0.610 0.614 1.548 sum -23.325 17.924 23.371 37.571 Atomic orbital electron populations 1.21932 0.93142 1.02802 1.02644 1.21120 0.97227 0.96335 0.96686 1.21807 1.00438 0.95777 1.02413 1.21299 1.01122 0.90593 0.99282 1.21690 1.05098 0.97540 0.90531 0.81836 1.20196 0.84704 0.80642 0.83359 1.43712 1.31601 1.30908 1.33260 1.90789 1.23478 1.64387 1.66586 1.20443 0.77782 0.82648 0.88511 1.90746 1.44475 1.65602 1.43586 1.45915 1.59846 1.07768 1.22409 1.20965 0.92916 0.94473 0.87272 0.91043 1.21832 0.96483 0.99326 0.98213 1.21443 0.98872 0.96682 0.97525 1.21316 0.96206 0.95808 0.97204 0.90429 1.20898 0.84261 0.95493 0.96448 1.42770 1.14442 1.68360 1.14815 1.19074 0.96527 1.26131 0.94710 0.92594 1.25513 0.97931 1.00930 1.01379 1.69887 1.13879 1.45110 1.34573 0.85423 0.77400 0.78881 0.80169 1.19919 1.22323 1.18134 1.21427 0.93453 1.01129 0.98179 1.21718 0.99655 0.94485 0.98916 0.92064 0.91807 0.91135 0.92133 0.91440 0.94072 0.92237 0.90265 0.93571 0.74862 0.75439 0.74810 0.94391 0.90738 0.93917 0.92788 0.95252 0.96525 0.80168 0.93358 0.89641 0.91856 0.89315 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.98 71.98 0.65 -0.45 16 2 C -0.10 -1.27 2.79 -10.79 -0.03 -1.30 16 3 C -0.15 -2.04 9.19 71.98 0.66 -1.38 16 4 C -0.08 -1.49 3.20 30.60 0.10 -1.39 16 5 C -0.12 -1.60 2.42 -12.29 -0.03 -1.63 16 6 H 0.16 0.56 6.39 -2.38 -0.02 0.55 16 7 C 0.53 7.72 6.06 87.66 0.53 8.25 16 8 N -0.83 -3.47 8.67 -173.54 -1.50 -4.98 16 9 O -0.57 -14.85 16.35 -3.03 -0.05 -14.90 16 10 C 0.52 9.90 7.12 87.65 0.62 10.53 16 11 O -0.57 -16.70 15.54 -3.04 -0.05 -16.74 16 12 N -0.71 -9.23 4.94 -442.54 -2.19 -11.42 16 13 C 0.15 2.68 2.49 44.99 0.11 2.79 16 14 H 0.07 1.66 7.52 -2.38 -0.02 1.64 16 15 C -0.12 -2.88 5.49 30.59 0.17 -2.72 16 16 C -0.11 -3.13 5.08 30.59 0.16 -2.98 16 17 C -0.09 -2.34 2.23 -10.80 -0.02 -2.36 16 18 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 19 C 0.15 5.83 5.65 86.38 0.49 6.32 16 20 N -0.76 -36.20 5.13 -343.44 -1.76 -37.96 16 21 C -0.23 -13.71 10.47 84.03 0.88 -12.83 16 22 H 0.06 3.59 8.06 -2.91 -0.02 3.56 16 23 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 24 N -0.98 -64.46 13.97 21.65 0.30 -64.16 16 25 Si 0.95 46.87 27.74 68.60 1.90 48.77 16 26 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 27 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 28 H -0.26 -11.58 6.52 99.48 0.65 -10.93 16 29 C -0.10 -1.93 5.20 30.57 0.16 -1.77 16 30 C -0.11 -1.36 5.39 30.57 0.16 -1.20 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.07 0.24 6.51 -2.39 -0.02 0.23 16 34 H 0.06 0.96 6.85 -2.39 -0.02 0.94 16 35 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 1.41 7.92 -2.38 -0.02 1.39 16 39 H 0.05 1.16 7.66 -2.39 -0.02 1.14 16 40 H 0.42 -1.63 8.22 -92.71 -0.76 -2.39 16 41 H 0.41 1.44 8.93 -92.71 -0.83 0.61 16 42 H 0.41 1.87 7.68 -92.71 -0.71 1.15 16 43 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.04 1.48 7.18 -2.39 -0.02 1.46 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.36 16.70 4.71 -92.71 -0.44 16.26 16 50 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 51 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 52 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 53 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 54 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -87.05 418.41 -0.16 -87.21 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -1.88 Total: 19.84 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 5.07 Total: -5.65 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -5.15 Total: -118.52 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.10 Total: -31.64 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.90 Total: 48.77 kcal Total: -87.05 -0.16 -87.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570049325.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.077 kcal (2) G-P(sol) polarization free energy of solvation -87.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds