Wall clock time and date at job start Sat Apr 11 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46872 * 2 1 4 4 C 1.52998 * 109.46758 * 176.03761 * 3 2 1 5 5 H 1.08995 * 109.47711 * 36.98018 * 4 3 2 6 6 C 1.50705 * 109.46998 * 156.97927 * 4 3 2 7 7 O 1.21277 * 119.99872 * 22.30884 * 6 4 3 8 8 N 1.34777 * 119.99957 * 202.31692 * 6 4 3 9 9 C 1.47027 * 125.64683 * 5.69761 * 8 6 4 10 10 C 1.54343 * 107.26262 * 178.85144 * 9 8 6 11 11 C 1.55157 * 103.01922 * 338.13876 * 10 9 8 12 12 H 1.08997 * 111.00635 * 277.23169 * 11 10 9 13 13 N 1.46901 * 111.03218 * 153.39678 * 11 10 9 14 14 C 1.46898 * 111.00010 * 92.78845 * 13 11 10 15 15 C 1.50704 * 109.47076 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00285 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00064 * 179.97438 * 15 14 13 18 18 C 1.37092 * 120.00124 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00053 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99795 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00301 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99604 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47126 * 60.00268 * 22 20 18 24 24 H 1.48506 * 109.46616 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47545 * 299.99821 * 22 20 18 26 26 C 1.47425 * 125.64917 * 186.00826 * 8 6 4 27 27 C 1.53003 * 109.47439 * 276.97295 * 4 3 2 28 28 C 1.53001 * 109.47094 * 306.02402 * 27 4 3 29 29 C 1.53006 * 109.46677 * 66.02252 * 27 4 3 30 30 H 1.08992 * 109.47621 * 59.99416 * 1 2 3 31 31 H 1.09000 * 109.47256 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47130 * 299.99279 * 1 2 3 33 33 H 1.09006 * 109.47130 * 240.00720 * 2 1 3 34 34 H 1.08992 * 109.47621 * 120.00584 * 2 1 3 35 35 H 1.08999 * 109.46837 * 56.04263 * 3 2 1 36 36 H 1.08996 * 109.47276 * 296.03811 * 3 2 1 37 37 H 1.09000 * 109.88000 * 298.39274 * 9 8 6 38 38 H 1.08996 * 109.88254 * 59.56589 * 9 8 6 39 39 H 1.08996 * 110.84648 * 219.67366 * 10 9 8 40 40 H 1.09003 * 110.51602 * 96.45215 * 10 9 8 41 41 H 1.00895 * 111.00337 * 328.82970 * 13 11 10 42 42 H 1.09009 * 109.46892 * 299.99452 * 14 13 11 43 43 H 1.08993 * 109.47606 * 59.99559 * 14 13 11 44 44 H 0.97005 * 119.99398 * 359.97438 * 17 15 14 45 45 H 0.97005 * 119.99940 * 180.02562 * 21 20 18 46 46 H 1.08998 * 110.36755 * 322.92474 * 26 8 6 47 47 H 1.08999 * 110.36890 * 85.14329 * 26 8 6 48 48 H 1.09001 * 109.47078 * 186.01757 * 27 4 3 49 49 H 1.08992 * 109.46974 * 66.69516 * 28 27 4 50 50 H 1.08999 * 109.46809 * 186.69262 * 28 27 4 51 51 H 1.08994 * 109.46873 * 306.69207 * 28 27 4 52 52 H 1.09002 * 109.46694 * 282.69564 * 29 27 4 53 53 H 1.08997 * 109.47189 * 42.69437 * 29 27 4 54 54 H 1.08994 * 109.46763 * 162.69894 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5667 1.4437 0.0997 5 1 3.9689 0.6090 -0.4744 6 6 4.1051 2.7386 -0.4520 7 8 3.3923 3.7184 -0.5044 8 7 5.3788 2.8078 -0.8873 9 6 6.3112 1.6758 -0.9919 10 6 7.6360 2.2249 -1.5626 11 6 7.1957 3.5332 -2.2711 12 1 6.8089 3.3261 -3.2688 13 7 8.3007 4.4995 -2.3280 14 6 9.0500 4.3690 -3.5847 15 6 10.1725 5.3744 -3.6071 16 8 10.3322 6.1261 -2.6686 17 7 10.9988 5.4384 -4.6699 18 6 12.0202 6.3526 -4.6900 19 1 12.1624 7.0218 -3.8544 20 6 12.8718 6.4188 -5.7859 21 7 12.6985 5.6049 -6.8029 22 14 14.2631 7.6650 -5.8136 23 1 15.1731 7.4166 -4.6667 24 1 15.0209 7.5326 -7.0838 25 1 13.7018 9.0361 -5.7121 26 6 6.0697 4.0320 -1.3314 27 6 3.9822 1.3019 1.5654 28 6 3.2960 2.3872 2.3973 29 6 3.5660 -0.0766 2.0824 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5137 0.8901 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 1.6198 1.9764 0.8524 36 1 1.7357 1.9355 -0.9233 37 1 6.4811 1.2433 -0.0059 38 1 5.9043 0.9213 -1.6650 39 1 8.0694 1.5261 -2.2780 40 1 8.3388 2.4400 -0.7576 41 1 8.9110 4.3983 -1.5309 42 1 9.4618 3.3625 -3.6594 43 1 8.3823 4.5517 -4.4266 44 1 10.8712 4.8370 -5.4202 45 1 13.2932 5.6509 -7.5678 46 1 5.3819 4.6801 -1.8744 47 1 6.4927 4.5601 -0.4768 48 1 5.0637 1.4098 1.6484 49 1 2.2208 2.2089 2.4112 50 1 3.6817 2.3620 3.4164 51 1 3.4967 3.3638 1.9569 52 1 2.4959 -0.0790 2.2897 53 1 3.7917 -0.8308 1.3285 54 1 4.1138 -0.3021 2.9973 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661352912.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:37 Heat of formation + Delta-G solvation = -108.025477 kcal Electronic energy + Delta-G solvation = -29886.130640 eV Core-core repulsion = 25856.202708 eV Total energy + Delta-G solvation = -4029.927933 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.56036 -40.23031 -39.25982 -37.85576 -36.20813 -35.56314 -34.27643 -33.27083 -31.80302 -30.56620 -29.74579 -28.19633 -27.87086 -26.26018 -25.33116 -24.04104 -22.11621 -22.01270 -21.27734 -21.02219 -19.92327 -19.68426 -18.19176 -17.76670 -17.43036 -17.29583 -16.78670 -16.32919 -16.09209 -15.93254 -15.64035 -15.28185 -15.01589 -14.64962 -14.50392 -14.45819 -14.13540 -14.01768 -13.93339 -13.89923 -13.61252 -13.47247 -13.27614 -13.08643 -12.95245 -12.85862 -12.74403 -12.67042 -12.49744 -12.43618 -12.36863 -12.12350 -12.10738 -11.78544 -11.76100 -11.70040 -11.50168 -11.33675 -10.89691 -10.71283 -10.35934 -10.01445 -9.69145 -9.31802 -8.46463 -5.95120 1.40043 1.42281 1.52859 1.58980 1.89199 2.05612 2.29857 2.90858 3.20894 3.34602 3.48198 3.65694 3.69493 3.79695 3.83461 4.01546 4.15008 4.23520 4.25736 4.27309 4.30079 4.34588 4.37057 4.49739 4.57700 4.57952 4.61029 4.67135 4.74455 4.78698 4.82666 4.85542 4.88770 4.95763 5.02169 5.03373 5.07449 5.11567 5.13587 5.18449 5.25921 5.28422 5.39168 5.40820 5.41181 5.50163 5.63443 5.87797 6.08368 6.36052 6.51507 6.60406 7.12858 7.13901 7.56527 8.12029 8.70472 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.030652 B = 0.001693 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.251259 B =16533.811829 C =16674.997374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.135 4.135 3 C -0.104 4.104 4 C -0.091 4.091 5 H 0.114 0.886 6 C 0.526 3.474 7 O -0.586 6.586 8 N -0.619 5.619 9 C 0.103 3.897 10 C -0.156 4.156 11 C 0.083 3.917 12 H 0.100 0.900 13 N -0.675 5.675 14 C 0.069 3.931 15 C 0.436 3.564 16 O -0.625 6.625 17 N -0.572 5.572 18 C -0.336 4.336 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.992 3.008 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.274 1.274 26 C 0.116 3.884 27 C -0.079 4.079 28 C -0.153 4.153 29 C -0.146 4.146 30 H 0.042 0.958 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.350 0.650 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.066 0.934 50 H 0.064 0.936 51 H 0.028 0.972 52 H 0.069 0.931 53 H 0.074 0.926 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.283 -20.524 13.597 31.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.172 4.172 3 C -0.142 4.142 4 C -0.112 4.112 5 H 0.132 0.868 6 C 0.316 3.684 7 O -0.466 6.466 8 N -0.353 5.353 9 C -0.019 4.019 10 C -0.196 4.196 11 C -0.028 4.028 12 H 0.118 0.882 13 N -0.307 5.307 14 C -0.063 4.063 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.209 5.209 18 C -0.466 4.466 19 H 0.096 0.904 20 C -0.211 4.211 21 N -0.559 5.559 22 Si 0.816 3.184 23 H -0.196 1.196 24 H -0.194 1.194 25 H -0.200 1.200 26 C -0.008 4.008 27 C -0.098 4.098 28 C -0.210 4.210 29 C -0.203 4.203 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.170 0.830 42 H 0.095 0.905 43 H 0.120 0.880 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.093 0.907 49 H 0.084 0.916 50 H 0.083 0.917 51 H 0.047 0.953 52 H 0.088 0.912 53 H 0.093 0.907 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.901 -19.021 13.786 30.788 hybrid contribution 1.179 0.321 -0.581 1.353 sum -18.722 -18.700 13.205 29.574 Atomic orbital electron populations 1.21776 0.95977 1.02012 1.01405 1.21978 0.95990 0.95228 1.04025 1.21555 0.92362 0.98249 1.02024 1.21511 0.97625 0.93776 0.98242 0.86794 1.21102 0.79604 0.91332 0.76321 1.90679 1.57965 1.40447 1.57510 1.48600 1.11777 1.10512 1.64396 1.22225 0.88376 0.88561 1.02747 1.23394 0.97078 0.97871 1.01226 1.22670 0.90974 0.89791 0.99332 0.88208 1.59805 1.13798 1.52988 1.04069 1.21539 0.93718 0.96779 0.94250 1.20911 0.85488 0.87823 0.83415 1.90501 1.75413 1.47105 1.38147 1.41912 1.27076 1.33785 1.18131 1.19627 1.07620 1.14837 1.04471 0.90391 1.26013 1.00981 0.99732 0.94405 1.69658 1.40068 1.38534 1.07680 0.85005 0.77541 0.77992 0.77893 1.19620 1.19450 1.19962 1.21979 0.93677 0.87462 0.97669 1.21016 1.00402 0.97185 0.91163 1.21977 1.01352 0.97686 0.99988 1.22079 1.02141 0.94320 1.01719 0.93831 0.91648 0.92876 0.91598 0.88541 0.91374 0.93940 0.89206 0.89001 0.87739 0.90072 0.82962 0.90498 0.87968 0.76881 0.91283 0.92456 0.92137 0.90706 0.91551 0.91651 0.95277 0.91209 0.90708 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.90 16 2 C -0.14 -1.35 5.51 30.59 0.17 -1.18 16 3 C -0.10 -1.63 4.08 30.59 0.12 -1.51 16 4 C -0.09 -1.33 1.58 -11.54 -0.02 -1.35 16 5 H 0.11 1.13 7.05 -2.39 -0.02 1.11 16 6 C 0.53 12.30 6.06 87.66 0.53 12.84 16 7 O -0.59 -19.26 15.65 -3.02 -0.05 -19.30 16 8 N -0.62 -12.79 3.33 -811.75 -2.70 -15.48 16 9 C 0.10 1.29 6.17 86.73 0.54 1.82 16 10 C -0.16 -2.28 6.55 31.79 0.21 -2.07 16 11 C 0.08 1.82 3.38 46.31 0.16 1.97 16 12 H 0.10 2.06 7.83 -2.39 -0.02 2.04 16 13 N -0.67 -20.13 6.04 -488.40 -2.95 -23.07 16 14 C 0.07 2.22 6.03 85.56 0.52 2.74 16 15 C 0.44 20.31 7.82 87.66 0.69 20.99 16 16 O -0.63 -34.40 15.78 -3.07 -0.05 -34.45 16 17 N -0.57 -28.87 5.29 -306.98 -1.62 -30.49 16 18 C -0.34 -18.98 9.68 84.04 0.81 -18.17 16 19 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 20 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 21 N -0.92 -49.01 13.05 21.66 0.28 -48.72 16 22 Si 0.99 42.73 29.55 68.60 2.03 44.75 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 26 C 0.12 2.93 6.63 86.86 0.58 3.50 16 27 C -0.08 -0.95 2.68 -10.79 -0.03 -0.98 16 28 C -0.15 -2.42 8.45 71.98 0.61 -1.81 16 29 C -0.15 -0.99 7.59 71.98 0.55 -0.44 16 30 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.10 0.67 3.97 -2.39 -0.01 0.66 16 35 H 0.07 1.19 5.42 -2.39 -0.01 1.17 16 36 H 0.04 0.88 7.66 -2.39 -0.02 0.86 16 37 H 0.09 0.81 7.33 -2.39 -0.02 0.79 16 38 H 0.09 0.79 7.95 -2.39 -0.02 0.77 16 39 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.23 7.75 -2.39 -0.02 1.21 16 41 H 0.35 10.79 7.89 -89.70 -0.71 10.09 16 42 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.10 3.01 8.09 -2.39 -0.02 3.00 16 44 H 0.40 18.88 7.90 -92.70 -0.73 18.15 16 45 H 0.28 13.91 8.31 -92.70 -0.77 13.14 16 46 H 0.06 1.72 7.98 -2.39 -0.02 1.70 16 47 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.07 0.89 7.33 -2.39 -0.02 0.88 16 49 H 0.07 0.98 6.14 -2.39 -0.01 0.96 16 50 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.03 0.65 6.78 -2.39 -0.02 0.63 16 52 H 0.07 0.46 6.08 -2.39 -0.01 0.44 16 53 H 0.07 0.32 7.52 -2.39 -0.02 0.30 16 54 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -73.78 417.06 1.01 -72.77 By element: Atomic # 1 Polarization: 39.21 SS G_CDS: -0.54 Total: 38.67 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 6.60 Total: 15.33 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -6.99 Total: -117.77 kcal Atomic # 8 Polarization: -53.65 SS G_CDS: -0.10 Total: -53.75 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -73.78 1.01 -72.77 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661352912.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.256 kcal (2) G-P(sol) polarization free energy of solvation -73.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds