Wall clock time and date at job start Sat Apr 11 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47092 * 2 1 4 4 C 1.52994 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47473 * 54.99572 * 4 3 2 6 6 C 1.53007 * 109.47114 * 294.99775 * 4 3 2 7 7 C 1.50700 * 109.47189 * 175.00307 * 4 3 2 8 8 O 1.21276 * 120.00187 * 34.77109 * 7 4 3 9 9 N 1.34774 * 119.99685 * 214.77360 * 7 4 3 10 10 C 1.47027 * 125.65179 * 354.90481 * 9 7 4 11 11 C 1.54323 * 107.27054 * 178.90990 * 10 9 7 12 12 C 1.55156 * 102.94199 * 337.80173 * 11 10 9 13 13 H 1.09002 * 111.03908 * 277.41639 * 12 11 10 14 14 C 1.53006 * 111.00385 * 153.57831 * 12 11 10 15 15 N 1.46905 * 109.46665 * 72.80545 * 14 12 11 16 16 C 1.46907 * 111.00088 * 66.05009 * 15 14 12 17 17 C 1.46901 * 110.99740 * 189.99981 * 15 14 12 18 18 C 1.50701 * 109.47279 * 170.00195 * 17 15 14 19 19 O 1.21293 * 119.99544 * 359.97438 * 18 17 15 20 20 N 1.34772 * 120.00256 * 180.02562 * 18 17 15 21 21 C 1.37095 * 119.99865 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00604 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99809 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99871 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00101 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47343 * 89.99753 * 25 23 21 27 27 H 1.48502 * 109.47174 * 210.00198 * 25 23 21 28 28 H 1.48503 * 109.46971 * 329.99594 * 25 23 21 29 29 C 1.47428 * 125.64789 * 174.86157 * 9 7 4 30 30 H 1.09004 * 109.47379 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46892 * 299.99955 * 1 2 3 32 32 H 1.08999 * 109.47175 * 59.99763 * 1 2 3 33 33 H 1.08997 * 109.46892 * 240.00045 * 2 1 3 34 34 H 1.08999 * 109.47175 * 120.00237 * 2 1 3 35 35 H 1.08995 * 109.46972 * 59.99761 * 3 2 1 36 36 H 1.08999 * 109.47304 * 300.00158 * 3 2 1 37 37 H 1.09004 * 109.46812 * 65.30415 * 6 4 3 38 38 H 1.08995 * 109.47407 * 185.30301 * 6 4 3 39 39 H 1.09001 * 109.47004 * 305.31353 * 6 4 3 40 40 H 1.08999 * 109.87710 * 298.32133 * 10 9 7 41 41 H 1.08999 * 109.88162 * 59.48663 * 10 9 7 42 42 H 1.09004 * 110.71414 * 219.44303 * 11 10 9 43 43 H 1.08999 * 110.72413 * 96.16996 * 11 10 9 44 44 H 1.08998 * 109.47293 * 312.80656 * 14 12 11 45 45 H 1.08999 * 109.46977 * 192.80376 * 14 12 11 46 46 H 1.08994 * 109.46693 * 183.95078 * 16 15 14 47 47 H 1.09001 * 109.46969 * 63.94816 * 16 15 14 48 48 H 1.08997 * 109.46502 * 303.95248 * 16 15 14 49 49 H 1.09000 * 109.47222 * 290.00299 * 17 15 14 50 50 H 1.09000 * 109.47301 * 50.00266 * 17 15 14 51 51 H 0.96998 * 119.99629 * 359.97438 * 20 18 17 52 52 H 0.97000 * 119.99623 * 180.02562 * 24 23 21 53 53 H 1.09004 * 110.36330 * 85.32544 * 29 9 7 54 54 H 1.08995 * 110.36896 * 323.00621 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8426 6 6 4.0805 0.8327 1.3065 7 6 4.0723 2.8579 -0.1244 8 8 3.4613 3.7661 0.3978 9 7 5.2005 3.1145 -0.8155 10 6 6.0921 2.1054 -1.4058 11 6 7.2322 2.8623 -2.1191 12 6 6.6138 4.2624 -2.3735 13 1 5.9978 4.2606 -3.2728 14 6 7.7016 5.3350 -2.4596 15 7 8.4272 5.1956 -3.7293 16 6 7.5521 5.4929 -4.8712 17 6 9.6242 6.0469 -3.7477 18 6 10.4689 5.7002 -4.9466 19 8 10.1093 4.8291 -5.7103 20 7 11.6243 6.3572 -5.1697 21 6 12.3929 6.0413 -6.2601 22 1 12.0724 5.2663 -6.9405 23 6 13.5839 6.7190 -6.4904 24 7 13.9732 7.6631 -5.6632 25 14 14.6309 6.2892 -7.9764 26 1 14.2194 7.1274 -9.1310 27 1 16.0605 6.5431 -7.6649 28 1 14.4452 4.8551 -8.3146 29 6 5.7447 4.4536 -1.1056 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9564 -0.8899 37 1 3.7968 -0.2188 1.3520 38 1 5.1664 0.9181 1.3476 39 1 3.6419 1.3642 2.1510 40 1 6.5031 1.4697 -0.6215 41 1 5.5415 1.5001 -2.1260 42 1 7.4874 2.3765 -3.0609 43 1 8.1073 2.9387 -1.4737 44 1 8.3968 5.2149 -1.6287 45 1 7.2429 6.3225 -2.4097 46 1 8.0937 5.3144 -5.8000 47 1 7.2396 6.5363 -4.8274 48 1 6.6737 4.8487 -4.8331 49 1 9.3249 7.0935 -3.8046 50 1 10.2008 5.8829 -2.8374 51 1 11.9120 7.0535 -4.5587 52 1 14.8044 8.1364 -5.8242 53 1 6.3578 4.8021 -0.2744 54 1 4.9359 5.1573 -1.3026 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664796480.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:53 Heat of formation + Delta-G solvation = -105.272785 kcal Electronic energy + Delta-G solvation = -29554.934127 eV Core-core repulsion = 25525.125560 eV Total energy + Delta-G solvation = -4029.808567 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.36024 -40.35862 -39.15820 -37.40739 -36.85590 -35.82748 -33.50621 -33.23099 -32.40343 -30.46940 -29.35682 -27.85060 -27.60436 -26.67328 -25.22459 -23.55791 -23.32816 -21.68387 -21.06384 -20.91058 -19.82781 -19.79862 -18.28748 -17.95231 -17.19794 -16.65473 -16.51570 -16.46158 -16.21707 -16.18450 -15.75865 -15.29382 -15.20825 -14.91312 -14.82021 -14.53188 -14.14911 -14.00371 -13.76492 -13.70237 -13.57758 -13.41566 -13.32978 -13.08780 -13.03972 -12.82889 -12.73608 -12.60698 -12.39279 -12.35771 -12.20868 -12.10914 -12.01873 -11.91332 -11.81180 -11.69890 -11.46000 -11.43265 -11.41123 -10.73168 -10.23496 -9.96858 -9.68472 -9.16120 -8.44013 -5.92233 1.39376 1.43115 1.55530 1.56408 1.94360 2.09628 2.30287 2.76675 3.23259 3.36274 3.48248 3.66027 3.74657 3.80948 3.88035 3.96949 4.23821 4.28146 4.29165 4.33208 4.35169 4.38586 4.42088 4.45660 4.50598 4.56679 4.61539 4.62935 4.70583 4.74723 4.78528 4.79582 4.87018 4.89602 4.92558 4.99230 5.03079 5.08750 5.17525 5.21406 5.22893 5.29052 5.33134 5.40547 5.41863 5.44038 5.48946 5.91021 6.09501 6.23297 6.49492 6.64139 7.10576 7.16380 7.60574 8.16524 8.73399 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.030826 B = 0.001632 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.101136 B =17152.691939 C =17372.254416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.100 4.100 4 C -0.101 4.101 5 H 0.110 0.890 6 C -0.137 4.137 7 C 0.525 3.475 8 O -0.589 6.589 9 N -0.619 5.619 10 C 0.099 3.901 11 C -0.112 4.112 12 C -0.087 4.087 13 H 0.083 0.917 14 C 0.068 3.932 15 N -0.528 5.528 16 C 0.025 3.975 17 C 0.057 3.943 18 C 0.443 3.557 19 O -0.612 6.612 20 N -0.576 5.576 21 C -0.331 4.331 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.991 3.009 26 H -0.272 1.272 27 H -0.272 1.272 28 H -0.273 1.273 29 C 0.112 3.888 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.043 0.957 46 H 0.056 0.944 47 H 0.023 0.977 48 H 0.080 0.920 49 H 0.064 0.936 50 H 0.111 0.889 51 H 0.395 0.605 52 H 0.276 0.724 53 H 0.072 0.928 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.149 -12.954 14.092 27.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.138 4.138 4 C -0.122 4.122 5 H 0.128 0.872 6 C -0.194 4.194 7 C 0.316 3.684 8 O -0.470 6.470 9 N -0.352 5.352 10 C -0.023 4.023 11 C -0.150 4.150 12 C -0.107 4.107 13 H 0.101 0.899 14 C -0.060 4.060 15 N -0.252 5.252 16 C -0.123 4.123 17 C -0.074 4.074 18 C 0.230 3.770 19 O -0.498 6.498 20 N -0.214 5.214 21 C -0.460 4.460 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.815 3.185 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.197 1.197 29 C -0.011 4.011 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.107 0.893 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.042 0.958 48 H 0.099 0.901 49 H 0.082 0.918 50 H 0.129 0.871 51 H 0.229 0.771 52 H 0.086 0.914 53 H 0.091 0.909 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.448 -13.450 13.864 28.129 hybrid contribution 0.599 1.600 -0.514 1.784 sum -19.849 -11.850 13.350 26.695 Atomic orbital electron populations 1.21785 0.95738 1.02131 1.01581 1.21554 0.96013 0.94923 1.03156 1.21450 0.92268 0.98255 1.01857 1.21366 0.97502 0.91083 1.02285 0.87183 1.21749 1.01273 1.02144 0.94272 1.21059 0.78612 0.92282 0.76474 1.90667 1.58532 1.49055 1.48734 1.48683 1.23968 1.08779 1.53765 1.22299 0.90868 0.91091 0.98031 1.22557 0.96950 0.94252 1.01247 1.22248 0.95662 0.95751 0.97027 0.89898 1.22094 0.95376 0.97181 0.91370 1.61499 1.06211 1.54382 1.03115 1.22459 0.96750 0.98512 0.94564 1.21747 0.92445 0.96017 0.97178 1.20771 0.83020 0.84269 0.88908 1.90459 1.72927 1.35521 1.50910 1.41943 1.19481 1.34935 1.25044 1.19655 1.02637 1.19725 1.04020 0.90259 1.26006 0.98191 0.95650 1.01431 1.69677 1.24340 1.23968 1.38305 0.84947 0.77317 0.78541 0.77657 1.19799 1.19680 1.19728 1.22164 0.96858 0.84999 0.97086 0.91652 0.93092 0.93204 0.90949 0.90551 0.92543 0.93084 0.88881 0.91935 0.93159 0.89448 0.89847 0.89882 0.90140 0.89265 0.93873 0.92548 0.95815 0.90130 0.91823 0.87126 0.77117 0.91420 0.90931 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.16 5.69 30.60 0.17 -0.99 16 3 C -0.10 -1.49 4.26 30.59 0.13 -1.36 16 4 C -0.10 -1.43 2.35 -11.54 -0.03 -1.46 16 5 H 0.11 1.11 6.91 -2.39 -0.02 1.09 16 6 C -0.14 -1.53 8.80 71.98 0.63 -0.90 16 7 C 0.53 11.45 6.84 87.66 0.60 12.05 16 8 O -0.59 -17.95 16.67 -3.02 -0.05 -18.00 16 9 N -0.62 -11.68 3.33 -811.80 -2.70 -14.38 16 10 C 0.10 1.34 6.21 86.73 0.54 1.88 16 11 C -0.11 -1.89 6.37 31.78 0.20 -1.69 16 12 C -0.09 -1.64 2.99 -9.40 -0.03 -1.67 16 13 H 0.08 1.67 6.23 -2.39 -0.01 1.66 16 14 C 0.07 1.43 4.41 86.30 0.38 1.82 16 15 N -0.53 -15.62 4.45 -927.01 -4.12 -19.74 16 16 C 0.03 0.76 9.03 127.69 1.15 1.92 16 17 C 0.06 1.89 5.45 85.56 0.47 2.36 16 18 C 0.44 20.49 7.51 87.66 0.66 21.15 16 19 O -0.61 -32.72 13.89 -3.07 -0.04 -32.76 16 20 N -0.58 -29.12 5.29 -306.99 -1.62 -30.74 16 21 C -0.33 -18.56 9.68 84.04 0.81 -17.75 16 22 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 24 N -0.92 -49.44 13.05 21.66 0.28 -49.16 16 25 Si 0.99 42.61 29.55 68.60 2.03 44.64 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 29 C 0.11 2.18 6.36 86.85 0.55 2.74 16 30 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 0.60 6.69 -2.39 -0.02 0.58 16 35 H 0.06 1.03 8.02 -2.39 -0.02 1.02 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 0.63 6.83 -2.39 -0.02 0.61 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 41 H 0.08 0.92 7.62 -2.39 -0.02 0.90 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.08 1.35 7.91 -2.39 -0.02 1.33 16 44 H 0.09 1.70 7.76 -2.39 -0.02 1.68 16 45 H 0.04 0.87 8.12 -2.39 -0.02 0.85 16 46 H 0.06 2.19 5.88 -2.39 -0.01 2.18 16 47 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.08 2.07 6.18 -2.39 -0.01 2.05 16 49 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 50 H 0.11 3.17 7.93 -2.39 -0.02 3.15 16 51 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 52 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 53 H 0.07 1.36 8.04 -2.38 -0.02 1.34 16 54 H 0.06 1.41 8.09 -2.39 -0.02 1.39 16 Total: -1.00 -71.31 424.00 1.34 -69.97 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.14 Total: 33.17 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 7.43 Total: 17.00 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -8.16 Total: -114.01 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.09 Total: -50.76 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -71.31 1.34 -69.97 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664796480.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.305 kcal (2) G-P(sol) polarization free energy of solvation -71.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds