Wall clock time and date at job start Sat Apr 11 2020 05:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46758 * 2 1 4 4 C 1.53002 * 109.46720 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47003 * 304.99428 * 4 3 2 6 6 C 1.52999 * 109.47381 * 64.99877 * 4 3 2 7 7 C 1.52996 * 109.46911 * 184.64156 * 6 4 3 8 8 C 1.52993 * 109.47326 * 65.89976 * 7 6 4 9 9 C 1.53003 * 109.47024 * 185.89847 * 7 6 4 10 10 C 1.50701 * 109.46810 * 184.99778 * 4 3 2 11 11 O 1.21276 * 120.00331 * 275.05879 * 10 4 3 12 12 N 1.34785 * 119.99681 * 95.05737 * 10 4 3 13 13 C 1.46501 * 119.99779 * 174.98676 * 12 10 4 14 14 C 1.53511 * 114.17004 * 154.99895 * 13 12 10 15 15 N 1.47477 * 87.93246 * 87.81312 * 14 13 12 16 16 C 1.46901 * 111.00281 * 138.70341 * 15 14 13 17 17 C 1.50699 * 109.47144 * 170.00125 * 16 15 14 18 18 O 1.21288 * 120.00317 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99988 * 180.02562 * 17 16 15 20 20 C 1.37089 * 120.00405 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99604 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00677 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99553 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00566 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47013 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47224 * 119.99797 * 24 22 20 27 27 H 1.48492 * 109.47135 * 240.00061 * 24 22 20 28 28 C 1.47484 * 87.83866 * 27.00820 * 15 14 13 29 29 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46753 * 300.00336 * 1 2 3 31 31 H 1.08996 * 109.47246 * 60.00094 * 1 2 3 32 32 H 1.09001 * 109.46844 * 240.00206 * 2 1 3 33 33 H 1.08999 * 109.46862 * 119.99552 * 2 1 3 34 34 H 1.08998 * 109.47125 * 59.99958 * 3 2 1 35 35 H 1.09003 * 109.46833 * 300.00130 * 3 2 1 36 36 H 1.09004 * 109.46962 * 304.64271 * 6 4 3 37 37 H 1.09002 * 109.46768 * 64.64158 * 6 4 3 38 38 H 1.09001 * 109.47503 * 305.89623 * 7 6 4 39 39 H 1.09001 * 109.47138 * 299.99541 * 8 7 6 40 40 H 1.08998 * 109.47410 * 60.00113 * 8 7 6 41 41 H 1.09000 * 109.47381 * 179.97438 * 8 7 6 42 42 H 1.09004 * 109.46834 * 59.99880 * 9 7 6 43 43 H 1.09000 * 109.47194 * 179.97438 * 9 7 6 44 44 H 1.09001 * 109.46798 * 300.00208 * 9 7 6 45 45 H 0.96993 * 120.00175 * 354.98096 * 12 10 4 46 46 H 1.09004 * 113.25802 * 22.04753 * 13 12 10 47 47 H 1.08995 * 113.47887 * 333.04099 * 14 13 12 48 48 H 1.09003 * 113.47406 * 202.57481 * 14 13 12 49 49 H 1.08998 * 109.47120 * 49.99665 * 16 15 14 50 50 H 1.09006 * 109.46831 * 289.99959 * 16 15 14 51 51 H 0.97001 * 119.99680 * 359.97438 * 19 17 16 52 52 H 0.96999 * 119.99824 * 180.02562 * 23 22 20 53 53 H 1.09004 * 113.47386 * 87.75458 * 28 15 14 54 54 H 1.08992 * 113.48047 * 218.22429 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8531 0.8410 6 6 4.0795 0.8331 -1.3083 7 6 5.6051 0.7267 -1.2609 8 6 6.0129 -0.2789 -0.1824 9 6 6.1259 0.2559 -2.6203 10 6 4.0724 2.8580 0.1231 11 8 4.1867 3.5496 -0.8665 12 7 4.3945 3.3553 1.3338 13 6 4.9857 4.6912 1.4432 14 6 4.7530 5.3724 2.7990 15 7 5.9789 4.7101 3.2820 16 6 6.7821 5.6245 4.1048 17 6 7.8886 4.8539 4.7778 18 8 7.9973 3.6605 4.5908 19 7 8.7570 5.4909 5.5883 20 6 9.7633 4.7899 6.2009 21 1 9.8600 3.7272 6.0344 22 6 10.6589 5.4466 7.0360 23 7 10.5414 6.7398 7.2382 24 14 12.0305 4.4916 7.8702 25 1 11.9452 3.0610 7.4811 26 1 13.3439 5.0421 7.4494 27 1 11.8924 4.6123 9.3438 28 6 6.4555 4.6983 1.8864 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.6498 -0.1602 -1.4378 37 1 3.7853 1.4681 -2.1439 38 1 6.0304 1.7027 -1.0271 39 1 5.6420 0.0565 0.7861 40 1 5.5878 -1.2549 -0.4162 41 1 7.0998 -0.3551 -0.1490 42 1 5.8353 0.9724 -3.3887 43 1 7.2128 0.1805 -2.5868 44 1 5.7006 -0.7201 -2.8541 45 1 4.2348 2.8287 2.1325 46 1 4.7760 5.3265 0.5826 47 1 3.8487 5.0347 3.3052 48 1 4.8334 6.4587 2.7586 49 1 6.1471 6.0846 4.8619 50 1 7.2125 6.4001 3.4714 51 1 8.6698 6.4453 5.7381 52 1 11.1668 7.1983 7.8209 53 1 6.9902 5.6047 1.6024 54 1 6.9940 3.7892 1.6191 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665234915.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:07 Heat of formation + Delta-G solvation = -91.898067 kcal Electronic energy + Delta-G solvation = -30139.543872 eV Core-core repulsion = 26110.315276 eV Total energy + Delta-G solvation = -4029.228596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.82721 -40.67777 -39.56757 -37.74540 -35.96084 -35.80696 -34.89349 -33.28362 -32.08633 -30.93606 -28.05104 -27.45949 -27.18923 -26.95680 -25.65059 -24.45187 -22.11523 -21.56021 -21.22905 -20.72127 -20.43105 -19.90442 -18.31064 -17.78566 -17.21869 -16.82816 -16.55224 -16.37702 -16.28296 -16.12590 -15.68336 -15.48268 -15.29113 -15.01669 -14.74713 -14.54005 -14.37208 -14.05932 -13.79193 -13.67458 -13.53280 -13.45493 -13.15345 -13.04142 -12.99784 -12.79353 -12.60727 -12.44884 -12.42608 -12.28913 -12.16245 -12.11578 -11.96063 -11.83670 -11.68875 -11.51077 -11.46631 -11.38770 -11.19189 -10.68273 -10.38889 -10.06012 -10.01263 -9.73691 -8.47600 -5.96027 1.35258 1.40215 1.54356 1.61332 2.05916 2.14992 2.27867 2.84158 3.18610 3.33500 3.51723 3.60711 3.72661 3.78235 3.88253 4.05276 4.14819 4.20603 4.22681 4.28951 4.32405 4.39494 4.44387 4.47167 4.48987 4.52857 4.63793 4.68681 4.77106 4.77780 4.81313 4.83546 4.86683 4.89523 4.96779 4.99873 5.08958 5.11889 5.16556 5.28329 5.31418 5.34158 5.40058 5.41560 5.45893 5.48137 5.53308 5.56001 5.85779 6.06039 6.57942 6.60395 7.12908 7.25900 7.56620 8.13262 8.70092 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014171 B = 0.002162 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.411139 B =12949.819530 C =13618.223160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.102 4.102 4 C -0.103 4.103 5 H 0.104 0.896 6 C -0.092 4.092 7 C -0.101 4.101 8 C -0.147 4.147 9 C -0.142 4.142 10 C 0.522 3.478 11 O -0.578 6.578 12 N -0.698 5.698 13 C 0.125 3.875 14 C 0.001 3.999 15 N -0.466 5.466 16 C 0.020 3.980 17 C 0.442 3.558 18 O -0.619 6.619 19 N -0.577 5.577 20 C -0.331 4.331 21 H 0.076 0.924 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.275 1.275 26 H -0.271 1.271 27 H -0.270 1.270 28 C -0.014 4.014 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.038 0.962 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.413 0.587 46 H 0.112 0.888 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.113 0.887 50 H 0.083 0.917 51 H 0.396 0.604 52 H 0.277 0.723 53 H 0.086 0.914 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.041 -8.372 -15.392 25.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.140 4.140 4 C -0.125 4.125 5 H 0.122 0.878 6 C -0.130 4.130 7 C -0.119 4.119 8 C -0.205 4.205 9 C -0.200 4.200 10 C 0.310 3.690 11 O -0.458 6.458 12 N -0.348 5.348 13 C 0.018 3.982 14 C -0.128 4.128 15 N -0.189 5.189 16 C -0.111 4.111 17 C 0.229 3.771 18 O -0.504 6.504 19 N -0.215 5.215 20 C -0.460 4.460 21 H 0.094 0.906 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.195 1.195 28 C -0.144 4.144 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.249 0.751 46 H 0.129 0.871 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.131 0.869 50 H 0.101 0.899 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.104 0.896 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.783 -9.158 -15.672 26.121 hybrid contribution 1.290 1.014 0.738 1.799 sum -17.493 -8.144 -14.934 24.400 Atomic orbital electron populations 1.21776 0.95405 1.02080 1.01821 1.21571 0.96161 0.95159 1.02976 1.21503 0.91040 0.98787 1.02637 1.21494 0.98029 0.91287 1.01652 0.87830 1.21566 0.94299 1.01688 0.95441 1.21120 0.96094 0.98268 0.96440 1.21890 1.00915 0.99487 0.98171 1.21780 1.00715 1.01627 0.95841 1.21177 0.75636 0.89886 0.82262 1.90650 1.55327 1.61732 1.38072 1.45642 1.62428 1.17474 1.09295 1.21852 0.92051 0.85474 0.98850 1.24328 0.95403 0.99856 0.93258 1.68780 1.04391 1.37980 1.07725 1.22405 0.95062 0.94303 0.99368 1.20828 0.85112 0.88291 0.82832 1.90485 1.76058 1.17279 1.66614 1.41961 1.26668 1.11081 1.41789 1.19653 1.07109 0.94172 1.25102 0.90606 1.26030 1.00851 0.96784 0.97746 1.69677 1.39045 1.08856 1.38616 0.84885 0.77516 0.77965 0.78061 1.19928 1.19613 1.19479 1.24416 0.98036 1.02184 0.89773 0.92026 0.92757 0.92871 0.90991 0.91164 0.91216 0.92047 0.88634 0.92131 0.94357 0.92885 0.90823 0.93710 0.93174 0.93153 0.91104 0.75063 0.87062 0.87757 0.87694 0.86942 0.89876 0.77020 0.91333 0.89571 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 71.99 0.71 -0.80 16 2 C -0.12 -1.27 5.70 30.60 0.17 -1.10 16 3 C -0.10 -1.40 4.67 30.60 0.14 -1.25 16 4 C -0.10 -1.75 2.06 -11.54 -0.02 -1.77 16 5 H 0.10 1.56 6.39 -2.39 -0.02 1.54 16 6 C -0.09 -1.57 3.76 30.59 0.11 -1.46 16 7 C -0.10 -2.01 2.81 -10.80 -0.03 -2.04 16 8 C -0.15 -2.71 8.97 71.98 0.65 -2.07 16 9 C -0.14 -2.50 9.19 71.98 0.66 -1.84 16 10 C 0.52 12.22 5.76 87.66 0.50 12.73 16 11 O -0.58 -17.62 15.58 -3.02 -0.05 -17.66 16 12 N -0.70 -15.44 5.39 -441.68 -2.38 -17.82 16 13 C 0.12 2.88 4.62 45.45 0.21 3.09 16 14 C 0.00 0.01 7.45 83.58 0.62 0.63 16 15 N -0.47 -14.21 5.82 -932.48 -5.43 -19.64 16 16 C 0.02 0.68 5.30 85.56 0.45 1.13 16 17 C 0.44 21.23 7.85 87.66 0.69 21.92 16 18 O -0.62 -35.04 16.01 -3.05 -0.05 -35.09 16 19 N -0.58 -29.84 5.29 -306.99 -1.62 -31.46 16 20 C -0.33 -19.01 9.68 84.04 0.81 -18.19 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 23 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16 24 Si 0.99 43.35 29.55 68.60 2.03 45.37 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 C -0.01 -0.39 7.53 83.58 0.63 0.23 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.69 6.47 -2.39 -0.02 0.68 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 1.19 6.36 -2.38 -0.02 1.18 16 37 H 0.06 1.23 7.69 -2.39 -0.02 1.21 16 38 H 0.04 1.01 7.06 -2.39 -0.02 0.99 16 39 H 0.05 1.01 6.50 -2.39 -0.02 0.99 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.41 8.26 8.76 -92.71 -0.81 7.44 16 46 H 0.11 2.58 7.41 -2.38 -0.02 2.56 16 47 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.11 1.69 7.91 -2.39 -0.02 1.67 16 49 H 0.11 3.22 8.08 -2.39 -0.02 3.20 16 50 H 0.08 2.41 7.30 -2.38 -0.02 2.39 16 51 H 0.40 19.31 7.90 -92.71 -0.73 18.58 16 52 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 53 H 0.09 2.28 7.42 -2.38 -0.02 2.26 16 54 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -73.35 429.30 -1.08 -74.43 By element: Atomic # 1 Polarization: 43.25 SS G_CDS: -0.65 Total: 42.59 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 6.79 Total: 8.88 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -9.15 Total: -118.53 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -0.10 Total: -52.75 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -73.35 -1.08 -74.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665234915.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.468 kcal (2) G-P(sol) polarization free energy of solvation -73.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds