Wall clock time and date at job start Sat Apr 11 2020 05:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.21286 * 120.00203 * 2 1 4 4 N 1.34774 * 120.00266 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00282 * 184.89355 * 4 2 1 6 6 C 1.50704 * 109.47348 * 296.66300 * 5 4 2 7 7 O 1.21280 * 119.99556 * 143.90328 * 6 5 4 8 8 N 1.34769 * 119.99914 * 323.90780 * 6 5 4 9 9 C 1.46500 * 120.00135 * 174.88959 * 8 6 5 10 10 C 1.52994 * 109.47478 * 179.97438 * 9 8 6 11 11 H 1.09007 * 109.47311 * 295.00268 * 10 9 8 12 12 N 1.46500 * 109.47046 * 54.99836 * 10 9 8 13 13 C 1.36943 * 120.00246 * 205.00028 * 12 10 9 14 14 H 1.08003 * 119.99752 * 0.02562 * 13 12 10 15 15 C 1.38811 * 120.00012 * 180.02562 * 13 12 10 16 16 N 1.31622 * 119.99627 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99916 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46811 * 90.00389 * 17 15 13 19 19 H 1.48500 * 109.46891 * 209.99961 * 17 15 13 20 20 H 1.48497 * 109.47229 * 330.00121 * 17 15 13 21 21 C 1.52998 * 109.47616 * 175.00350 * 10 9 8 22 22 C 1.52995 * 109.47271 * 180.02562 * 21 10 9 23 23 C 1.53001 * 109.46713 * 299.99770 * 21 10 9 24 24 C 1.53007 * 109.47136 * 56.66479 * 5 4 2 25 25 C 1.52998 * 109.46956 * 60.00072 * 24 5 4 26 26 C 1.52998 * 109.47465 * 60.00122 * 25 24 5 27 27 C 1.52999 * 109.47157 * 299.99900 * 26 25 24 28 28 C 1.52996 * 109.47428 * 176.66430 * 5 4 2 29 29 H 1.09008 * 109.47403 * 269.99850 * 1 2 3 30 30 H 1.08998 * 109.47391 * 29.99822 * 1 2 3 31 31 H 1.09009 * 109.47389 * 149.99867 * 1 2 3 32 32 H 0.97000 * 120.00199 * 4.89416 * 4 2 1 33 33 H 0.97005 * 120.00256 * 354.89346 * 8 6 5 34 34 H 1.08997 * 109.47359 * 300.00539 * 9 8 6 35 35 H 1.09001 * 109.46630 * 60.00052 * 9 8 6 36 36 H 0.97001 * 119.99893 * 25.00507 * 12 10 9 37 37 H 0.96998 * 119.99102 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.46803 * 59.99648 * 21 10 9 39 39 H 1.09004 * 109.47224 * 179.97438 * 22 21 10 40 40 H 1.08995 * 109.47342 * 299.99319 * 22 21 10 41 41 H 1.08999 * 109.47606 * 60.00002 * 22 21 10 42 42 H 1.09008 * 109.46908 * 60.00350 * 23 21 10 43 43 H 1.08998 * 109.46931 * 179.97438 * 23 21 10 44 44 H 1.08996 * 109.47473 * 300.00037 * 23 21 10 45 45 H 1.08999 * 109.46663 * 300.00252 * 24 5 4 46 46 H 1.08996 * 109.47102 * 180.02562 * 24 5 4 47 47 H 1.09002 * 109.46867 * 300.00138 * 25 24 5 48 48 H 1.09002 * 109.47045 * 180.02562 * 25 24 5 49 49 H 1.08996 * 109.47006 * 59.99682 * 26 25 24 50 50 H 1.08998 * 109.47470 * 179.97438 * 26 25 24 51 51 H 1.08996 * 109.47389 * 179.97438 * 27 26 25 52 52 H 1.09002 * 109.47327 * 300.00077 * 27 26 25 53 53 H 1.09002 * 109.47390 * 180.02562 * 28 5 4 54 54 H 1.09003 * 109.47333 * 59.99681 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 3.6418 -1.1695 0.1077 6 6 4.2356 -0.4786 -1.0928 7 8 5.2326 0.2009 -0.9697 8 7 3.6587 -0.6157 -2.3030 9 6 4.1681 0.1436 -3.4476 10 6 3.3432 -0.1937 -4.6912 11 1 3.4907 -1.2418 -4.9519 12 7 1.9244 0.0460 -4.4160 13 6 0.9659 -0.6277 -5.1250 14 1 1.2560 -1.3362 -5.8868 15 6 -0.3784 -0.4001 -4.8645 16 7 -1.2996 -1.0482 -5.5456 17 14 -0.8800 0.8247 -3.5463 18 1 -1.0249 2.1725 -4.1524 19 1 -2.1749 0.4081 -2.9505 20 1 0.1609 0.8670 -2.4880 21 6 3.7930 0.6897 -5.8567 22 6 2.9677 0.3528 -7.1001 23 6 3.5859 2.1608 -5.4909 24 6 4.0601 -0.4303 1.3803 25 6 3.4573 -1.1318 2.5991 26 6 3.9620 -2.5749 2.6584 27 6 3.5437 -3.3142 1.3858 28 6 4.1465 -2.6126 0.1669 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 1.6985 -2.0057 -0.0726 33 1 2.9061 -1.2172 -2.4162 34 1 4.0916 1.2106 -3.2388 35 1 5.2116 -0.1186 -3.6221 36 1 1.6639 0.6821 -3.7315 37 1 -2.2389 -0.8888 -5.3638 38 1 4.8486 0.5112 -6.0614 39 1 3.2878 0.9824 -7.9303 40 1 3.1148 -0.6952 -7.3609 41 1 1.9122 0.5315 -6.8951 42 1 4.1737 2.4011 -4.6049 43 1 3.9068 2.7902 -6.3210 44 1 2.5304 2.3392 -5.2861 45 1 3.7005 0.5978 1.3381 46 1 5.1471 -0.4317 1.4606 47 1 2.3703 -1.1300 2.5185 48 1 3.7550 -0.6049 3.5057 49 1 5.0490 -2.5767 2.7389 50 1 3.5329 -3.0746 3.5269 51 1 3.9036 -4.3421 1.4278 52 1 2.4567 -3.3124 1.3052 53 1 5.2335 -2.6143 0.2479 54 1 3.8485 -3.1393 -0.7397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667474237.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:20 Heat of formation + Delta-G solvation = -103.238949 kcal Electronic energy + Delta-G solvation = -33173.667907 eV Core-core repulsion = 29143.947534 eV Total energy + Delta-G solvation = -4029.720373 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.19630 -40.08933 -39.14850 -38.40283 -35.51041 -34.83825 -34.64041 -32.53790 -31.99767 -31.81946 -29.82398 -29.45224 -27.87834 -25.67892 -24.50599 -23.74401 -23.28311 -22.15338 -21.42172 -20.52519 -20.17681 -19.58463 -18.43953 -18.10825 -17.38827 -16.91667 -16.65700 -16.35461 -16.02785 -15.90953 -15.61471 -15.24901 -15.11446 -14.90224 -14.68256 -14.63200 -14.56883 -14.29255 -13.76791 -13.72302 -13.54601 -13.42700 -13.29669 -13.09807 -13.06343 -12.88950 -12.86271 -12.73204 -12.46884 -12.14830 -12.07403 -11.98401 -11.81271 -11.75701 -11.50903 -11.41220 -11.28979 -11.25604 -11.08380 -10.88504 -10.71007 -10.04436 -10.01618 -9.24866 -7.91683 -5.23348 1.36106 1.45349 1.48084 1.49623 1.62808 2.09770 2.32380 2.53939 3.39113 3.53808 3.58696 3.62352 3.75519 3.84940 3.86651 4.12835 4.19964 4.22657 4.23474 4.25292 4.34124 4.35444 4.46339 4.49998 4.53709 4.60051 4.64096 4.68240 4.76934 4.90338 4.90815 4.94358 5.01549 5.08048 5.12153 5.16225 5.16568 5.20041 5.21000 5.25664 5.28309 5.34395 5.40951 5.49368 5.51838 5.54854 5.78042 5.89555 6.29465 6.45979 6.58457 7.14675 7.18282 7.23463 7.89736 8.09543 9.28515 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011944 B = 0.004753 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.692828 B = 5888.997886 C = 7038.596545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.513 3.487 3 O -0.577 6.577 4 N -0.707 5.707 5 C 0.171 3.829 6 C 0.511 3.489 7 O -0.583 6.583 8 N -0.708 5.708 9 C 0.117 3.883 10 C 0.176 3.824 11 H 0.062 0.938 12 N -0.739 5.739 13 C -0.199 4.199 14 H 0.070 0.930 15 C -0.052 4.052 16 N -0.980 5.980 17 Si 0.929 3.071 18 H -0.310 1.310 19 H -0.293 1.293 20 H -0.243 1.243 21 C -0.103 4.103 22 C -0.133 4.133 23 C -0.138 4.138 24 C -0.111 4.111 25 C -0.109 4.109 26 C -0.117 4.117 27 C -0.112 4.112 28 C -0.115 4.115 29 H 0.125 0.875 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.420 0.580 33 H 0.408 0.592 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.360 0.640 37 H 0.253 0.747 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.042 0.958 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.034 0.966 45 H 0.050 0.950 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.063 0.937 50 H 0.081 0.919 51 H 0.090 0.910 52 H 0.076 0.924 53 H 0.082 0.918 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.134 -6.327 15.303 18.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.302 3.698 3 O -0.456 6.456 4 N -0.363 5.363 5 C 0.081 3.919 6 C 0.297 3.703 7 O -0.462 6.462 8 N -0.358 5.358 9 C -0.007 4.007 10 C 0.068 3.932 11 H 0.080 0.920 12 N -0.382 5.382 13 C -0.330 4.330 14 H 0.088 0.912 15 C -0.243 4.243 16 N -0.631 5.631 17 Si 0.760 3.240 18 H -0.239 1.239 19 H -0.219 1.219 20 H -0.168 1.168 21 C -0.125 4.125 22 C -0.191 4.191 23 C -0.195 4.195 24 C -0.150 4.150 25 C -0.146 4.146 26 C -0.154 4.154 27 C -0.149 4.149 28 C -0.153 4.153 29 H 0.143 0.857 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.259 0.741 33 H 0.244 0.756 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.193 0.807 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.082 0.918 50 H 0.100 0.900 51 H 0.108 0.892 52 H 0.095 0.905 53 H 0.101 0.899 54 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.172 -5.258 15.246 19.067 hybrid contribution -1.388 0.777 0.009 1.591 sum 8.784 -4.481 15.256 18.165 Atomic orbital electron populations 1.22086 0.90131 1.05183 1.06349 1.21177 0.91388 0.83297 0.73939 1.90718 1.71347 1.33076 1.50439 1.46069 1.05747 1.09498 1.75035 1.20494 0.80771 0.98410 0.92197 1.21319 0.83394 0.80501 0.85097 1.90623 1.27552 1.42065 1.85986 1.45885 1.35755 1.45763 1.08426 1.21649 0.98049 0.95500 0.85518 1.20628 0.82801 0.98064 0.91726 0.91966 1.42751 1.01357 1.50097 1.43949 1.18929 0.85995 1.15632 1.12414 0.91218 1.25153 0.95918 1.01625 1.01652 1.69843 0.99919 1.47525 1.45822 0.85901 0.78024 0.78691 0.81424 1.23869 1.21931 1.16777 1.21558 0.99464 0.95560 0.95870 1.21718 1.00950 0.99948 0.96440 1.21752 1.00684 0.96223 1.00873 1.21647 1.01045 0.99266 0.93047 1.21469 1.00503 0.96632 0.96042 1.21558 1.01288 0.94156 0.98413 1.21543 1.01431 0.99571 0.92344 1.21831 1.02071 0.89913 1.01472 0.85717 0.91034 0.88380 0.74101 0.75572 0.93184 0.90379 0.80730 0.93814 0.89964 0.93031 0.93926 0.93212 0.93002 0.92119 0.94669 0.93126 0.91356 0.91817 0.91531 0.91805 0.90021 0.89156 0.90500 0.89910 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.26 9.56 71.23 0.68 -3.57 16 2 C 0.51 14.81 7.29 87.65 0.64 15.45 16 3 O -0.58 -22.27 14.31 -3.05 -0.04 -22.32 16 4 N -0.71 -15.60 3.33 -426.33 -1.42 -17.02 16 5 C 0.17 4.17 0.58 2.86 0.00 4.17 16 6 C 0.51 16.88 5.41 87.66 0.47 17.35 16 7 O -0.58 -23.46 16.09 -3.03 -0.05 -23.51 16 8 N -0.71 -22.73 5.21 -463.08 -2.41 -25.14 16 9 C 0.12 3.88 5.02 86.38 0.43 4.32 16 10 C 0.18 6.09 2.35 44.99 0.11 6.19 16 11 H 0.06 2.17 8.08 -2.38 -0.02 2.15 16 12 N -0.74 -30.66 3.48 -322.94 -1.12 -31.78 16 13 C -0.20 -9.92 8.05 84.03 0.68 -9.25 16 14 H 0.07 3.81 7.63 -2.91 -0.02 3.79 16 15 C -0.05 -2.80 5.50 84.86 0.47 -2.34 16 16 N -0.98 -58.39 13.97 21.65 0.30 -58.09 16 17 Si 0.93 43.00 27.05 68.60 1.86 44.85 16 18 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 19 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 20 H -0.24 -10.20 4.93 99.48 0.49 -9.70 16 21 C -0.10 -3.30 2.80 -10.80 -0.03 -3.34 16 22 C -0.13 -4.71 8.26 71.98 0.59 -4.11 16 23 C -0.14 -4.46 8.69 71.98 0.63 -3.84 16 24 C -0.11 -2.87 3.99 30.60 0.12 -2.75 16 25 C -0.11 -1.94 5.76 30.59 0.18 -1.76 16 26 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 27 C -0.11 -1.26 5.75 30.60 0.18 -1.08 16 28 C -0.11 -1.93 4.75 30.60 0.15 -1.78 16 29 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.07 2.07 6.62 -2.39 -0.02 2.06 16 31 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.42 6.48 7.44 -92.71 -0.69 5.79 16 33 H 0.41 12.68 7.63 -92.70 -0.71 11.98 16 34 H 0.05 1.85 6.17 -2.39 -0.01 1.84 16 35 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.36 15.66 5.66 -92.71 -0.52 15.13 16 37 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 38 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.05 2.16 6.01 -2.39 -0.01 2.15 16 42 H 0.05 1.61 6.32 -2.38 -0.02 1.60 16 43 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.03 1.31 7.60 -2.39 -0.02 1.29 16 45 H 0.05 1.70 6.10 -2.39 -0.01 1.69 16 46 H 0.07 1.86 7.87 -2.39 -0.02 1.84 16 47 H 0.06 1.11 7.58 -2.39 -0.02 1.09 16 48 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 50 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 52 H 0.08 0.73 6.93 -2.39 -0.02 0.71 16 53 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 54 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -72.58 404.06 1.35 -71.23 By element: Atomic # 1 Polarization: 50.63 SS G_CDS: -1.23 Total: 49.40 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 5.47 Total: 12.37 kcal Atomic # 7 Polarization: -127.38 SS G_CDS: -4.65 Total: -132.03 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -0.09 Total: -45.82 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.86 Total: 44.85 kcal Total: -72.58 1.35 -71.23 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667474237.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.010 kcal (2) G-P(sol) polarization free energy of solvation -72.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds