Wall clock time and date at job start Sat Apr 11 2020 05:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21286 * 119.99743 * 2 1 4 4 N 1.34775 * 120.00415 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00259 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.46647 * 34.99850 * 5 4 2 7 7 C 1.50701 * 109.47039 * 155.00290 * 5 4 2 8 8 O 1.21280 * 119.99706 * 9.17720 * 7 5 4 9 9 N 1.34778 * 119.99638 * 189.18072 * 7 5 4 10 10 C 1.46501 * 119.99681 * 175.66578 * 9 7 5 11 11 H 1.09003 * 109.47024 * 4.85958 * 10 9 7 12 12 C 1.53001 * 109.47017 * 244.85944 * 10 9 7 13 13 N 1.46500 * 109.46960 * 55.00189 * 12 10 9 14 14 C 1.36942 * 119.99962 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99940 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00253 * 180.02562 * 14 13 12 17 17 N 1.31628 * 119.99925 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00334 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46819 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47272 * 119.99659 * 18 16 14 21 21 H 1.48501 * 109.47028 * 240.00136 * 18 16 14 22 22 C 1.52992 * 109.47317 * 124.85814 * 10 9 7 23 23 C 1.54274 * 110.03243 * 53.78532 * 22 10 9 24 24 C 1.54962 * 104.16385 * 217.13625 * 23 22 10 25 25 C 1.54892 * 102.77415 * 37.88828 * 24 23 22 26 26 C 1.53875 * 110.03649 * 296.57405 * 22 10 9 27 27 C 1.53004 * 109.47109 * 275.00253 * 5 4 2 28 28 C 1.53002 * 109.47057 * 303.36618 * 27 5 4 29 29 C 1.52995 * 109.47139 * 63.36363 * 27 5 4 30 30 H 1.08998 * 109.47184 * 240.00037 * 1 2 3 31 31 H 1.09002 * 109.46906 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46890 * 120.00077 * 1 2 3 33 33 H 0.97004 * 119.99774 * 0.02562 * 4 2 1 34 34 H 0.96990 * 120.00118 * 355.66542 * 9 7 5 35 35 H 1.08998 * 109.47171 * 174.99881 * 12 10 9 36 36 H 1.08994 * 109.47304 * 295.00231 * 12 10 9 37 37 H 0.97001 * 120.00093 * 359.97438 * 13 12 10 38 38 H 0.96997 * 120.00153 * 180.02562 * 17 16 14 39 39 H 1.09004 * 110.02298 * 175.17680 * 22 10 9 40 40 H 1.09003 * 110.48355 * 335.79066 * 23 22 10 41 41 H 1.08999 * 110.48340 * 98.42532 * 23 22 10 42 42 H 1.08999 * 110.71863 * 279.57380 * 24 23 22 43 43 H 1.08999 * 110.76338 * 156.22105 * 24 23 22 44 44 H 1.08998 * 110.48582 * 203.40593 * 25 24 23 45 45 H 1.08999 * 110.59938 * 80.81973 * 25 24 23 46 46 H 1.09001 * 110.02817 * 238.57096 * 26 22 10 47 47 H 1.09003 * 110.02658 * 359.94531 * 26 22 10 48 48 H 1.08996 * 109.47028 * 183.36866 * 27 5 4 49 49 H 1.09001 * 109.47260 * 64.80294 * 28 27 5 50 50 H 1.08993 * 109.47027 * 184.80378 * 28 27 5 51 51 H 1.08999 * 109.47029 * 304.79810 * 28 27 5 52 52 H 1.08996 * 109.47571 * 300.00171 * 29 27 5 53 53 H 1.09002 * 109.46917 * 60.00374 * 29 27 5 54 54 H 1.09003 * 109.47334 * 179.97438 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6460 -1.1671 0.0011 6 1 4.0090 -0.3251 0.5905 7 6 4.1481 -2.4547 0.6020 8 8 3.3725 -3.3568 0.8377 9 7 5.4590 -2.6036 0.8775 10 6 5.9333 -3.8165 1.5483 11 1 5.1042 -4.5143 1.6663 12 6 6.4932 -3.4522 2.9248 13 7 5.4776 -2.7221 3.6874 14 6 5.7541 -2.2898 4.9571 15 1 6.7208 -2.4876 5.3963 16 6 4.7917 -1.5984 5.6799 17 7 3.6134 -1.3578 5.1448 18 14 5.1691 -1.0082 7.4116 19 1 6.5532 -1.4022 7.7781 20 1 5.0432 0.4703 7.4691 21 1 4.2109 -1.6241 8.3643 22 6 7.0324 -4.4681 0.7068 23 6 8.1422 -3.4413 0.4004 24 6 8.5816 -3.7783 -1.0469 25 6 7.2433 -4.1477 -1.7339 26 6 6.4613 -4.9175 -0.6496 27 6 4.1565 -1.0416 -1.4358 28 6 3.5789 -2.1770 -2.2832 29 6 3.7170 0.3034 -2.0175 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 1.6960 -2.0072 0.0005 34 1 6.0883 -1.9077 0.6316 35 1 6.7642 -4.3627 3.4594 36 1 7.3767 -2.8256 2.8034 37 1 4.6096 -2.5441 3.2928 38 1 2.9410 -0.8744 5.6498 39 1 7.4511 -5.3233 1.2374 40 1 7.7479 -2.4264 0.4527 41 1 8.9763 -3.5635 1.0913 42 1 9.2665 -4.6262 -1.0544 43 1 9.0346 -2.9100 -1.5254 44 1 7.4222 -4.7849 -2.5999 45 1 6.7024 -3.2484 -2.0283 46 1 6.6036 -5.9906 -0.7775 47 1 5.4009 -4.6721 -0.7079 48 1 5.2448 -1.1017 -1.4412 49 1 2.4963 -2.0675 -2.3481 50 1 4.0086 -2.1381 -3.2841 51 1 3.8203 -3.1343 -1.8212 52 1 2.6287 0.3635 -2.0121 53 1 4.1286 1.1123 -1.4138 54 1 4.0811 0.3930 -3.0411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671563944.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:37 Heat of formation + Delta-G solvation = -107.810032 kcal Electronic energy + Delta-G solvation = -32626.319566 eV Core-core repulsion = 28596.400976 eV Total energy + Delta-G solvation = -4029.918590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.84891 -40.55448 -39.14008 -37.11941 -36.69108 -35.17313 -34.17016 -33.03345 -31.30589 -30.71687 -29.57006 -28.16542 -27.94929 -27.53684 -25.10698 -23.01874 -22.51228 -21.98347 -21.10724 -20.60472 -20.34375 -19.21702 -18.74995 -17.74766 -17.25792 -17.08040 -16.82261 -16.59136 -16.31174 -15.83913 -15.52226 -15.25319 -15.13263 -15.03427 -14.84922 -14.54910 -14.25410 -14.10637 -13.85356 -13.66342 -13.33924 -13.28762 -13.17264 -13.11418 -12.99636 -12.81844 -12.76680 -12.35173 -12.13845 -12.03763 -12.00492 -11.86697 -11.82296 -11.81165 -11.64706 -11.52442 -11.42393 -11.31285 -11.02683 -10.90547 -10.82715 -10.08110 -9.91930 -9.00386 -7.95656 -5.24764 1.43475 1.44542 1.52355 1.54526 1.71975 1.96976 2.49687 2.53807 3.37831 3.52319 3.62148 3.72909 3.77207 3.85269 3.95591 3.97214 4.15271 4.21382 4.27882 4.41283 4.45110 4.55577 4.59788 4.61819 4.63999 4.67514 4.71908 4.80255 4.81307 4.88632 4.91572 4.93376 4.95584 4.97532 5.05122 5.10349 5.10812 5.17740 5.18678 5.32457 5.34311 5.38876 5.43477 5.45249 5.46962 5.52540 5.58402 5.63878 6.24380 6.51721 6.55448 7.21310 7.26828 7.31540 8.08828 8.30803 9.27137 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007197 B = 0.005449 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3889.337788 B = 5137.531524 C = 8204.846239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.505 3.495 3 O -0.583 6.583 4 N -0.704 5.704 5 C 0.134 3.866 6 H 0.082 0.918 7 C 0.523 3.477 8 O -0.570 6.570 9 N -0.693 5.693 10 C 0.151 3.849 11 H 0.072 0.928 12 C 0.138 3.862 13 N -0.742 5.742 14 C -0.242 4.242 15 H 0.078 0.922 16 C -0.077 4.077 17 N -0.967 5.967 18 Si 0.972 3.028 19 H -0.263 1.263 20 H -0.296 1.296 21 H -0.295 1.295 22 C -0.090 4.090 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.114 4.114 27 C -0.089 4.089 28 C -0.138 4.138 29 C -0.130 4.130 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.413 0.587 34 H 0.406 0.594 35 H 0.028 0.972 36 H 0.036 0.964 37 H 0.372 0.628 38 H 0.247 0.753 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.047 0.953 48 H 0.095 0.905 49 H 0.055 0.945 50 H 0.077 0.923 51 H 0.046 0.954 52 H 0.046 0.954 53 H 0.042 0.958 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.863 -3.983 -20.712 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.294 3.706 3 O -0.463 6.463 4 N -0.357 5.357 5 C 0.025 3.975 6 H 0.100 0.900 7 C 0.309 3.691 8 O -0.449 6.449 9 N -0.344 5.344 10 C 0.045 3.955 11 H 0.090 0.910 12 C 0.011 3.989 13 N -0.384 5.384 14 C -0.374 4.374 15 H 0.096 0.904 16 C -0.269 4.269 17 N -0.618 5.618 18 Si 0.802 3.198 19 H -0.187 1.187 20 H -0.223 1.223 21 H -0.223 1.223 22 C -0.110 4.110 23 C -0.157 4.157 24 C -0.153 4.153 25 C -0.154 4.154 26 C -0.151 4.151 27 C -0.109 4.109 28 C -0.195 4.195 29 C -0.187 4.187 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.135 0.865 33 H 0.250 0.750 34 H 0.243 0.757 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.204 0.796 38 H 0.056 0.944 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.066 0.934 48 H 0.113 0.887 49 H 0.075 0.925 50 H 0.096 0.904 51 H 0.065 0.935 52 H 0.065 0.935 53 H 0.061 0.939 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.870 -3.887 -20.369 21.095 hybrid contribution -0.473 0.438 1.503 1.636 sum 3.398 -3.449 -18.866 19.477 Atomic orbital electron populations 1.21920 0.88346 1.06162 1.06043 1.21480 0.92221 0.82666 0.74233 1.90700 1.71734 1.32569 1.51289 1.45734 1.05478 1.09821 1.74692 1.20817 0.82975 0.95131 0.98609 0.89987 1.20584 0.82851 0.88578 0.77101 1.90651 1.55979 1.43363 1.54929 1.45672 1.07496 1.21896 1.59372 1.21149 0.97185 0.86570 0.90560 0.90980 1.21264 0.92034 0.94855 0.90733 1.42515 1.14697 1.66825 1.14409 1.19675 0.98419 1.27448 0.91829 0.90420 1.25578 0.96175 1.02604 1.02576 1.69869 1.05930 1.47408 1.38571 0.85087 0.77713 0.77075 0.79968 1.18707 1.22303 1.22273 1.22044 0.94332 0.98618 0.96028 1.22441 0.97309 0.98111 0.97810 1.22472 0.97002 1.01658 0.94211 1.22309 0.95833 0.99930 0.97364 1.22106 0.99182 1.00198 0.93662 1.21448 1.01127 0.97289 0.91040 1.21763 1.01319 0.96491 0.99971 1.21769 1.01256 0.95125 1.00547 0.88629 0.88689 0.86496 0.74978 0.75661 0.95466 0.94572 0.79631 0.94390 0.89372 0.92141 0.91116 0.90829 0.90680 0.90897 0.91778 0.91373 0.93439 0.88722 0.92548 0.90423 0.93535 0.93477 0.93902 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.30 10.32 71.24 0.74 -2.57 16 2 C 0.50 14.99 6.43 87.66 0.56 15.56 16 3 O -0.58 -21.59 14.22 -3.05 -0.04 -21.63 16 4 N -0.70 -20.52 4.12 -446.08 -1.84 -22.36 16 5 C 0.13 4.07 2.37 44.25 0.11 4.18 16 6 H 0.08 3.01 7.58 -2.39 -0.02 3.00 16 7 C 0.52 17.58 5.20 87.66 0.46 18.04 16 8 O -0.57 -22.67 15.16 -3.03 -0.05 -22.71 16 9 N -0.69 -20.88 3.86 -442.54 -1.71 -22.59 16 10 C 0.15 4.76 1.99 44.99 0.09 4.85 16 11 H 0.07 2.73 6.91 -2.39 -0.02 2.72 16 12 C 0.14 5.39 5.87 86.38 0.51 5.90 16 13 N -0.74 -38.49 5.43 -343.45 -1.87 -40.35 16 14 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 15 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 16 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 17 N -0.97 -61.75 13.06 21.65 0.28 -61.47 16 18 Si 0.97 47.63 29.55 68.60 2.03 49.65 16 19 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 21 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 22 C -0.09 -2.04 2.78 -10.07 -0.03 -2.07 16 23 C -0.12 -2.27 5.27 31.70 0.17 -2.11 16 24 C -0.12 -1.71 6.91 31.91 0.22 -1.49 16 25 C -0.12 -1.83 6.83 31.67 0.22 -1.61 16 26 C -0.11 -2.29 6.23 31.32 0.20 -2.10 16 27 C -0.09 -2.00 2.75 -10.79 -0.03 -2.03 16 28 C -0.14 -2.69 8.79 71.98 0.63 -2.05 16 29 C -0.13 -3.02 7.76 71.98 0.56 -2.47 16 30 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.09 1.83 8.12 -2.39 -0.02 1.82 16 32 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.41 11.35 7.72 -92.71 -0.72 10.64 16 34 H 0.41 10.73 6.70 -92.72 -0.62 10.11 16 35 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.04 1.34 7.30 -2.39 -0.02 1.32 16 37 H 0.37 21.19 6.80 -92.71 -0.63 20.56 16 38 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 39 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 1.22 5.83 -2.39 -0.01 1.21 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.05 1.17 7.35 -2.39 -0.02 1.15 16 48 H 0.09 1.81 8.06 -2.39 -0.02 1.79 16 49 H 0.06 1.10 7.68 -2.39 -0.02 1.08 16 50 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.05 1.03 7.17 -2.39 -0.02 1.01 16 52 H 0.05 1.20 5.68 -2.39 -0.01 1.19 16 53 H 0.04 1.17 7.75 -2.39 -0.02 1.15 16 54 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -76.04 416.23 1.44 -74.60 By element: Atomic # 1 Polarization: 54.93 SS G_CDS: -1.06 Total: 53.87 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 5.70 Total: 12.99 kcal Atomic # 7 Polarization: -141.64 SS G_CDS: -5.13 Total: -146.77 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -0.09 Total: -44.34 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.65 kcal Total: -76.04 1.44 -74.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671563944.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.213 kcal (2) G-P(sol) polarization free energy of solvation -76.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds