Wall clock time and date at job start Sat Apr 11 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21280 * 120.00279 * 2 1 4 4 N 1.34782 * 119.99631 * 179.72186 * 2 1 3 5 5 C 1.46500 * 119.99876 * 180.27433 * 4 2 1 6 6 H 1.09002 * 109.47066 * 35.00199 * 5 4 2 7 7 C 1.50695 * 109.46880 * 155.00100 * 5 4 2 8 8 O 1.21281 * 120.00462 * 13.03211 * 7 5 4 9 9 N 1.34781 * 120.00071 * 193.03352 * 7 5 4 10 10 C 1.46502 * 120.00251 * 174.81140 * 9 7 5 11 11 H 1.09004 * 109.46850 * 37.12740 * 10 9 7 12 12 C 1.52997 * 109.47193 * 157.12701 * 10 9 7 13 13 N 1.46499 * 109.47305 * 302.93277 * 12 10 9 14 14 C 1.36933 * 120.00476 * 179.97438 * 13 12 10 15 15 H 1.08007 * 119.99496 * 0.02562 * 14 13 12 16 16 C 1.38809 * 120.00602 * 179.97438 * 14 13 12 17 17 N 1.31616 * 119.99644 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00334 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47019 * 89.99761 * 18 16 14 20 20 H 1.48500 * 109.47091 * 210.00189 * 18 16 14 21 21 H 1.48495 * 109.47026 * 330.00240 * 18 16 14 22 22 C 1.52994 * 109.47127 * 277.12859 * 10 9 7 23 23 C 1.54263 * 110.03446 * 296.44531 * 22 10 9 24 24 C 1.54892 * 104.19567 * 217.10723 * 23 22 10 25 25 C 1.54887 * 102.74786 * 37.93810 * 24 23 22 26 26 C 1.53873 * 110.03153 * 179.27642 * 22 10 9 27 27 C 1.52992 * 109.47033 * 275.00132 * 5 4 2 28 28 C 1.52999 * 109.47241 * 306.07297 * 27 5 4 29 29 C 1.52998 * 109.47298 * 66.07590 * 27 5 4 30 30 H 1.09001 * 109.47336 * 90.00064 * 1 2 3 31 31 H 1.08995 * 109.47459 * 210.00231 * 1 2 3 32 32 H 1.08999 * 109.47052 * 330.00162 * 1 2 3 33 33 H 0.97003 * 119.99871 * 0.27886 * 4 2 1 34 34 H 0.97003 * 119.99549 * 354.81259 * 9 7 5 35 35 H 1.09005 * 109.47092 * 62.93222 * 12 10 9 36 36 H 1.08993 * 109.47147 * 182.93154 * 12 10 9 37 37 H 0.97009 * 119.99938 * 0.02562 * 13 12 10 38 38 H 0.97008 * 119.99979 * 179.97438 * 17 16 14 39 39 H 1.09006 * 110.01652 * 57.88692 * 22 10 9 40 40 H 1.09007 * 110.48584 * 335.78082 * 23 22 10 41 41 H 1.09000 * 110.48699 * 98.42693 * 23 22 10 42 42 H 1.09004 * 110.75328 * 279.62430 * 24 23 22 43 43 H 1.09002 * 110.91649 * 156.33031 * 24 23 22 44 44 H 1.09004 * 110.48173 * 203.37736 * 25 24 23 45 45 H 1.09000 * 110.59582 * 80.79407 * 25 24 23 46 46 H 1.09008 * 110.03136 * 238.56636 * 26 22 10 47 47 H 1.09001 * 110.03718 * 359.97438 * 26 22 10 48 48 H 1.08998 * 109.46962 * 186.07296 * 27 5 4 49 49 H 1.08999 * 109.47180 * 64.47757 * 28 27 5 50 50 H 1.09007 * 109.47040 * 184.47866 * 28 27 5 51 51 H 1.09001 * 109.46895 * 304.47263 * 28 27 5 52 52 H 1.09001 * 109.47486 * 59.99676 * 29 27 5 53 53 H 1.09006 * 109.47165 * 179.97438 * 29 27 5 54 54 H 1.08998 * 109.46874 * 299.99760 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0057 5 6 3.6458 -1.1673 0.0117 6 1 4.0067 -0.3241 0.6007 7 6 4.1455 -2.4535 0.6174 8 8 3.3822 -3.3805 0.7877 9 7 5.4408 -2.5738 0.9700 10 6 5.9027 -3.7797 1.6619 11 1 5.3812 -4.6498 1.2630 12 6 7.4086 -3.9453 1.4479 13 7 7.6950 -3.9971 0.0122 14 6 8.9849 -4.1421 -0.4240 15 1 9.7912 -4.2187 0.2907 16 6 9.2563 -4.1918 -1.7844 17 7 8.2738 -4.0990 -2.6551 18 14 11.0159 -4.3903 -2.3792 19 1 11.3322 -5.8348 -2.5159 20 1 11.1714 -3.7226 -3.6965 21 1 11.9429 -3.7714 -1.3980 22 6 5.6113 -3.6522 3.1584 23 6 6.4136 -2.4774 3.7549 24 6 6.8284 -2.9760 5.1615 25 6 7.1434 -4.4723 4.9145 26 6 6.0753 -4.9206 3.8957 27 6 4.1617 -1.0451 -1.4234 28 6 3.5345 -2.1421 -2.2860 29 6 3.7826 0.3260 -1.9867 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6958 -2.0073 0.0057 34 1 6.0672 -1.8619 0.7656 35 1 7.9339 -3.1002 1.8930 36 1 7.7430 -4.8697 1.9187 37 1 6.9709 -3.9280 -0.6297 38 1 8.4634 -4.1333 -3.6059 39 1 4.5444 -3.4963 3.3188 40 1 7.2952 -2.2705 3.1482 41 1 5.7870 -1.5890 3.8345 42 1 6.0061 -2.8659 5.8684 43 1 7.7138 -2.4482 5.5160 44 1 7.0495 -5.0397 5.8404 45 1 8.1429 -4.5897 4.4959 46 1 5.2338 -5.3797 4.4147 47 1 6.5077 -5.6272 3.1874 48 1 5.2463 -1.1533 -1.4300 49 1 2.4572 -1.9871 -2.3442 50 1 3.9616 -2.1050 -3.2882 51 1 3.7380 -3.1157 -1.8402 52 1 4.2294 1.1075 -1.3721 53 1 4.1506 0.4132 -3.0090 54 1 2.6980 0.4341 -1.9800 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671563945.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:41 Heat of formation + Delta-G solvation = -106.083466 kcal Electronic energy + Delta-G solvation = -31999.214599 eV Core-core repulsion = 27969.370878 eV Total energy + Delta-G solvation = -4029.843721 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.82813 -40.58070 -39.34287 -37.06920 -36.72234 -35.28351 -34.18315 -32.99055 -31.26057 -30.67520 -29.55769 -28.19556 -28.03816 -27.53733 -25.02799 -23.41378 -22.43311 -21.89212 -21.30366 -20.62289 -20.07459 -19.25754 -18.64092 -17.86321 -17.28732 -17.08225 -16.94428 -16.41736 -16.20445 -16.08915 -15.57269 -15.26339 -15.21115 -15.05255 -14.90141 -14.59772 -14.38815 -14.11267 -13.98778 -13.50048 -13.31557 -13.30136 -13.16484 -13.06605 -12.82488 -12.76430 -12.64541 -12.40130 -12.23142 -12.10866 -12.07667 -11.91535 -11.87324 -11.86800 -11.82244 -11.77070 -11.38667 -11.19431 -10.93898 -10.90306 -10.83449 -10.11967 -9.95477 -8.96244 -7.91930 -5.20665 1.48402 1.48964 1.49478 1.57631 1.67068 1.87964 2.49063 2.57181 3.41939 3.50221 3.62888 3.72168 3.74549 3.81563 3.90611 3.96447 4.05702 4.16420 4.20700 4.34221 4.41766 4.52906 4.56510 4.58714 4.62072 4.68120 4.69636 4.75524 4.75867 4.86017 4.86882 4.89507 4.91838 4.94748 5.07571 5.10463 5.13379 5.13480 5.16955 5.26200 5.29556 5.33808 5.37956 5.38826 5.48906 5.52247 5.55347 5.61152 6.28319 6.47542 6.55814 7.12316 7.25401 7.36417 8.09493 8.33699 9.30461 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007994 B = 0.004336 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3501.951606 B = 6455.412795 C = 9186.112642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.507 3.493 3 O -0.580 6.580 4 N -0.704 5.704 5 C 0.141 3.859 6 H 0.109 0.891 7 C 0.519 3.481 8 O -0.567 6.567 9 N -0.701 5.701 10 C 0.156 3.844 11 H 0.059 0.941 12 C 0.147 3.853 13 N -0.741 5.741 14 C -0.242 4.242 15 H 0.076 0.924 16 C -0.068 4.068 17 N -0.963 5.963 18 Si 0.967 3.033 19 H -0.291 1.291 20 H -0.298 1.298 21 H -0.269 1.269 22 C -0.088 4.088 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.120 4.120 27 C -0.098 4.098 28 C -0.135 4.135 29 C -0.125 4.125 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.414 0.586 34 H 0.408 0.592 35 H 0.043 0.957 36 H 0.036 0.964 37 H 0.374 0.626 38 H 0.249 0.751 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.054 0.946 51 H 0.035 0.965 52 H 0.053 0.947 53 H 0.054 0.946 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.256 6.215 11.548 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.297 3.703 3 O -0.460 6.460 4 N -0.358 5.358 5 C 0.032 3.968 6 H 0.126 0.874 7 C 0.305 3.695 8 O -0.447 6.447 9 N -0.350 5.350 10 C 0.051 3.949 11 H 0.077 0.923 12 C 0.021 3.979 13 N -0.384 5.384 14 C -0.374 4.374 15 H 0.094 0.906 16 C -0.261 4.261 17 N -0.613 5.613 18 Si 0.796 3.204 19 H -0.219 1.219 20 H -0.225 1.225 21 H -0.194 1.194 22 C -0.108 4.108 23 C -0.160 4.160 24 C -0.155 4.155 25 C -0.158 4.158 26 C -0.158 4.158 27 C -0.118 4.118 28 C -0.193 4.193 29 C -0.182 4.182 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.252 0.748 34 H 0.243 0.757 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.206 0.794 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.076 0.924 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.073 0.927 51 H 0.054 0.946 52 H 0.072 0.928 53 H 0.073 0.927 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.184 6.272 11.731 18.729 hybrid contribution 0.956 -0.494 -1.198 1.610 sum -12.228 5.777 10.533 17.142 Atomic orbital electron populations 1.21901 0.88075 1.06137 1.06245 1.21511 0.92157 0.82446 0.74204 1.90718 1.71634 1.32466 1.51192 1.45855 1.05034 1.10138 1.74773 1.20709 0.83201 0.95546 0.97371 0.87374 1.20670 0.82518 0.89279 0.77075 1.90636 1.56282 1.41271 1.56482 1.45857 1.09175 1.21546 1.58465 1.21098 0.94422 0.87087 0.92258 0.92252 1.21181 0.92197 0.99284 0.85244 1.42508 1.05564 1.88454 1.01888 1.19565 0.86178 1.40628 0.91029 0.90579 1.25448 1.00693 1.03680 0.96262 1.69813 1.31745 1.58982 1.00754 0.85244 0.80641 0.77199 0.77276 1.21892 1.22486 1.19368 1.21995 0.99832 0.96686 0.92271 1.22518 0.99681 0.96852 0.96906 1.22455 1.01402 0.95512 0.96126 1.22338 0.98322 0.96411 0.98742 1.22195 0.99188 0.96449 0.97983 1.21423 1.00387 0.97209 0.92778 1.21688 1.01147 0.96995 0.99458 1.21735 1.01724 0.94530 1.00204 0.87184 0.88151 0.88294 0.74765 0.75690 0.93920 0.94586 0.79364 0.94226 0.91665 0.91255 0.91770 0.90942 0.90817 0.90448 0.92085 0.91108 0.92409 0.90909 0.91243 0.92706 0.94564 0.92802 0.92713 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 10.30 71.24 0.73 -1.27 16 2 C 0.51 11.02 6.56 87.66 0.57 11.59 16 3 O -0.58 -16.81 14.24 -3.03 -0.04 -16.85 16 4 N -0.70 -15.86 4.05 -446.11 -1.81 -17.66 16 5 C 0.14 3.75 2.35 44.24 0.10 3.85 16 6 H 0.11 2.89 7.58 -2.39 -0.02 2.88 16 7 C 0.52 15.85 6.04 87.65 0.53 16.38 16 8 O -0.57 -19.74 15.45 -3.03 -0.05 -19.78 16 9 N -0.70 -21.47 4.35 -442.54 -1.92 -23.39 16 10 C 0.16 5.03 1.80 44.99 0.08 5.11 16 11 H 0.06 2.26 7.58 -2.39 -0.02 2.24 16 12 C 0.15 5.43 5.26 86.38 0.45 5.89 16 13 N -0.74 -35.56 5.45 -343.46 -1.87 -37.43 16 14 C -0.24 -12.93 9.99 84.03 0.84 -12.09 16 15 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 16 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 17 N -0.96 -57.25 13.06 21.65 0.28 -56.97 16 18 Si 0.97 45.18 29.55 68.60 2.03 47.21 16 19 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 20 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 C -0.09 -2.29 2.91 -10.07 -0.03 -2.31 16 23 C -0.12 -2.78 5.90 31.67 0.19 -2.60 16 24 C -0.12 -2.24 6.91 31.89 0.22 -2.02 16 25 C -0.12 -2.45 6.83 31.67 0.22 -2.23 16 26 C -0.12 -2.85 5.95 31.32 0.19 -2.67 16 27 C -0.10 -2.76 2.72 -10.80 -0.03 -2.79 16 28 C -0.14 -3.93 8.78 71.98 0.63 -3.30 16 29 C -0.12 -3.32 7.82 71.98 0.56 -2.76 16 30 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.41 8.71 7.72 -92.71 -0.72 7.99 16 34 H 0.41 12.21 8.59 -92.71 -0.80 11.42 16 35 H 0.04 1.51 5.81 -2.38 -0.01 1.50 16 36 H 0.04 1.36 6.61 -2.39 -0.02 1.34 16 37 H 0.37 19.52 7.41 -92.70 -0.69 18.83 16 38 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 39 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.07 1.73 5.49 -2.38 -0.01 1.72 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 45 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 47 H 0.06 1.55 6.38 -2.39 -0.02 1.53 16 48 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 49 H 0.07 1.71 7.61 -2.39 -0.02 1.69 16 50 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 51 H 0.04 1.21 7.23 -2.39 -0.02 1.20 16 52 H 0.05 1.49 7.91 -2.39 -0.02 1.47 16 53 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 54 H 0.06 1.51 5.62 -2.39 -0.01 1.50 16 Total: -1.00 -66.98 416.58 1.06 -65.91 By element: Atomic # 1 Polarization: 54.79 SS G_CDS: -1.29 Total: 53.50 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 5.73 Total: 5.46 kcal Atomic # 7 Polarization: -130.13 SS G_CDS: -5.32 Total: -135.45 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -0.09 Total: -36.63 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -66.98 1.06 -65.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671563945.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.171 kcal (2) G-P(sol) polarization free energy of solvation -66.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds