Wall clock time and date at job start Sat Apr 11 2020 05:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21282 * 120.00277 * 2 1 4 4 N 1.34781 * 120.00052 * 179.97438 * 2 1 3 5 5 C 1.46504 * 120.00279 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.47094 * 34.99781 * 5 4 2 7 7 C 1.50695 * 109.46860 * 154.99741 * 5 4 2 8 8 O 1.21279 * 120.00291 * 22.07993 * 7 5 4 9 9 N 1.34778 * 120.00006 * 202.34789 * 7 5 4 10 10 C 1.46498 * 120.00585 * 184.89596 * 9 7 5 11 11 C 1.52998 * 109.47436 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46080 * 60.02372 * 11 10 9 13 13 C 1.53039 * 109.45962 * 300.06798 * 11 10 9 14 14 C 1.53191 * 109.31419 * 178.61435 * 13 11 10 15 15 N 1.46921 * 108.77699 * 54.63378 * 14 13 11 16 16 C 1.36935 * 120.63161 * 126.41317 * 15 14 13 17 17 H 1.07998 * 120.00252 * 208.83297 * 16 15 14 18 18 C 1.38813 * 119.99906 * 28.83060 * 16 15 14 19 19 N 1.31616 * 119.99951 * 16.01404 * 18 16 15 20 20 Si 1.86804 * 120.00096 * 196.00830 * 18 16 15 21 21 H 1.48501 * 109.46892 * 89.99946 * 20 18 16 22 22 H 1.48502 * 109.47183 * 210.00544 * 20 18 16 23 23 H 1.48500 * 109.46966 * 330.00215 * 20 18 16 24 24 C 1.46931 * 118.73923 * 306.39522 * 15 14 13 25 25 C 1.53033 * 109.46198 * 179.97438 * 11 10 9 26 26 C 1.53004 * 109.46723 * 274.99805 * 5 4 2 27 27 C 1.53004 * 109.47133 * 305.37599 * 26 5 4 28 28 C 1.52998 * 109.47283 * 65.37720 * 26 5 4 29 29 H 1.08998 * 109.47439 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47017 * 300.00134 * 1 2 3 31 31 H 1.09000 * 109.46796 * 59.99955 * 1 2 3 32 32 H 0.96998 * 119.99777 * 359.97438 * 4 2 1 33 33 H 0.97010 * 119.99386 * 4.89304 * 9 7 5 34 34 H 1.08997 * 109.46884 * 300.00131 * 10 9 7 35 35 H 1.09001 * 109.47108 * 59.99849 * 10 9 7 36 36 H 1.09003 * 109.46959 * 60.00185 * 12 11 10 37 37 H 1.08998 * 109.47169 * 179.97438 * 12 11 10 38 38 H 1.09003 * 109.47563 * 300.00353 * 12 11 10 39 39 H 1.09005 * 109.49957 * 298.56575 * 13 11 10 40 40 H 1.09009 * 109.49901 * 58.66432 * 13 11 10 41 41 H 1.08999 * 109.58651 * 294.84590 * 14 13 11 42 42 H 1.09005 * 109.58788 * 174.42543 * 14 13 11 43 43 H 0.96999 * 119.99902 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.58081 * 293.82072 * 24 15 14 45 45 H 1.08996 * 109.70485 * 173.46462 * 24 15 14 46 46 H 1.08999 * 109.49778 * 301.33869 * 25 11 10 47 47 H 1.09002 * 109.49851 * 61.43292 * 25 11 10 48 48 H 1.09000 * 109.46935 * 185.37752 * 26 5 4 49 49 H 1.09004 * 109.46793 * 55.52768 * 27 26 5 50 50 H 1.09000 * 109.47018 * 175.52988 * 27 26 5 51 51 H 1.09002 * 109.46903 * 295.52908 * 27 26 5 52 52 H 1.08999 * 109.47183 * 59.99927 * 28 26 5 53 53 H 1.08998 * 109.47098 * 179.97438 * 28 26 5 54 54 H 1.09000 * 109.47161 * 299.99893 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0011 6 1 4.0090 -0.3254 0.5904 7 6 4.1479 -2.4548 0.6021 8 8 3.4324 -3.4338 0.6230 9 7 5.3901 -2.5169 1.1213 10 6 5.9178 -3.7940 1.6079 11 6 7.3364 -3.5891 2.1429 12 6 7.3071 -2.5789 3.2916 13 6 8.2327 -3.0593 1.0212 14 6 9.6436 -2.8226 1.5691 15 7 10.1243 -4.0644 2.1899 16 6 11.3233 -4.6116 1.8182 17 1 11.4741 -5.6788 1.8863 18 6 12.3449 -3.7945 1.3539 19 7 12.2935 -2.4955 1.5594 20 14 13.7926 -4.5386 0.4374 21 1 13.4938 -4.5711 -1.0169 22 1 15.0053 -3.7152 0.6754 23 1 14.0295 -5.9210 0.9251 24 6 9.2943 -4.7078 3.2176 25 6 7.8871 -4.9232 2.6517 26 6 4.1564 -1.0420 -1.4358 27 6 3.5393 -2.1477 -2.2946 28 6 3.7600 0.3236 -2.0006 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6959 -2.0072 0.0013 33 1 5.9348 -1.7158 1.1726 34 1 5.2792 -4.1700 2.4072 35 1 5.9380 -4.5141 0.7899 36 1 6.6683 -2.9556 4.0905 37 1 8.3177 -2.4331 3.6731 38 1 6.9143 -1.6286 2.9299 39 1 8.2741 -3.7895 0.2129 40 1 7.8268 -2.1206 0.6438 41 1 9.6175 -2.0277 2.3144 42 1 10.3096 -2.5400 0.7537 43 1 13.0072 -1.9245 1.2346 44 1 9.2398 -4.0666 4.0973 45 1 9.7288 -5.6689 3.4922 46 1 7.2353 -5.3110 3.4345 47 1 7.9316 -5.6362 1.8284 48 1 5.2421 -1.1378 -1.4453 49 1 2.4527 -2.1007 -2.2215 50 1 3.8398 -2.0114 -3.3334 51 1 3.8856 -3.1187 -1.9405 52 1 4.1997 1.1113 -1.3889 53 1 4.1241 0.4130 -3.0241 54 1 2.6743 0.4195 -1.9911 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671862542.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:44 Heat of formation + Delta-G solvation = -90.170520 kcal Electronic energy + Delta-G solvation = -31458.983673 eV Core-core repulsion = 27429.829989 eV Total energy + Delta-G solvation = -4029.153684 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.79254 -40.60591 -39.70479 -37.12807 -36.55711 -34.74480 -34.17097 -32.69891 -31.57111 -30.88233 -29.08072 -28.40832 -28.08472 -27.19766 -25.53952 -23.92002 -22.61430 -22.23686 -21.60087 -20.67382 -19.65800 -18.91637 -18.16815 -17.78952 -17.15964 -17.07595 -16.78231 -16.37127 -16.12682 -15.66337 -15.49950 -15.26764 -15.12813 -15.02005 -14.84444 -14.60593 -14.42486 -14.21326 -14.02572 -13.39756 -13.34696 -13.30542 -13.14377 -13.13934 -12.94780 -12.82596 -12.67780 -12.57749 -12.37570 -12.33084 -12.23742 -12.06283 -11.88890 -11.81191 -11.79207 -11.45523 -11.17673 -11.04698 -10.94472 -10.88152 -10.49191 -10.12742 -10.06725 -8.60940 -7.85504 -5.30749 1.43523 1.45966 1.47497 1.55687 1.66173 1.86483 2.49476 2.51739 3.28450 3.52743 3.73120 3.73589 3.80785 3.87218 3.89296 3.95863 3.97472 4.15005 4.40844 4.42611 4.53267 4.54813 4.59122 4.62664 4.69090 4.72418 4.76800 4.78044 4.84465 4.86280 4.92089 4.95764 4.96991 5.06778 5.08848 5.11256 5.14536 5.26635 5.28604 5.32660 5.38110 5.39851 5.40583 5.42022 5.50903 5.57221 5.68251 5.86750 6.41738 6.43300 6.54080 7.07674 7.18629 7.24449 7.91023 8.41486 9.19904 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002508 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.003972 B =11160.301254 C =11779.837025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.508 3.492 3 O -0.580 6.580 4 N -0.705 5.705 5 C 0.134 3.866 6 H 0.105 0.895 7 C 0.517 3.483 8 O -0.564 6.564 9 N -0.711 5.711 10 C 0.143 3.857 11 C -0.054 4.054 12 C -0.137 4.137 13 C -0.116 4.116 14 C 0.179 3.821 15 N -0.610 5.610 16 C -0.260 4.260 17 H 0.062 0.938 18 C -0.049 4.049 19 N -0.933 5.933 20 Si 0.962 3.038 21 H -0.287 1.287 22 H -0.296 1.296 23 H -0.270 1.270 24 C 0.142 3.858 25 C -0.111 4.111 26 C -0.098 4.098 27 C -0.142 4.142 28 C -0.130 4.130 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.415 0.585 33 H 0.410 0.590 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.006 0.994 42 H 0.046 0.954 43 H 0.249 0.751 44 H 0.020 0.980 45 H 0.047 0.953 46 H 0.082 0.918 47 H 0.054 0.946 48 H 0.085 0.915 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.043 0.957 52 H 0.050 0.950 53 H 0.059 0.941 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.172 2.829 -3.720 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.297 3.703 3 O -0.460 6.460 4 N -0.360 5.360 5 C 0.025 3.975 6 H 0.123 0.877 7 C 0.302 3.698 8 O -0.443 6.443 9 N -0.363 5.363 10 C 0.019 3.981 11 C -0.055 4.055 12 C -0.194 4.194 13 C -0.155 4.155 14 C 0.054 3.946 15 N -0.333 5.333 16 C -0.390 4.390 17 H 0.080 0.920 18 C -0.245 4.245 19 N -0.579 5.579 20 Si 0.791 3.209 21 H -0.213 1.213 22 H -0.222 1.222 23 H -0.195 1.195 24 C 0.016 3.984 25 C -0.150 4.150 26 C -0.118 4.118 27 C -0.199 4.199 28 C -0.187 4.187 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.253 0.747 33 H 0.247 0.753 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.024 0.976 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.038 0.962 45 H 0.066 0.934 46 H 0.101 0.899 47 H 0.073 0.927 48 H 0.103 0.897 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.063 0.937 52 H 0.069 0.931 53 H 0.078 0.922 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.122 2.948 -3.726 24.585 hybrid contribution 1.540 -0.230 -0.345 1.594 sum -22.582 2.718 -4.071 23.107 Atomic orbital electron populations 1.21875 0.88305 1.06068 1.06127 1.21472 0.92084 0.82554 0.74175 1.90733 1.71535 1.32536 1.51168 1.45919 1.05206 1.10033 1.74824 1.20806 0.83127 0.95588 0.97993 0.87697 1.20665 0.81768 0.89978 0.77341 1.90667 1.56530 1.38499 1.58640 1.46006 1.15704 1.12849 1.61719 1.21325 0.93236 0.84845 0.98660 1.20564 0.92633 0.96562 0.95716 1.21874 1.01685 0.98304 0.97564 1.22046 0.96335 1.00063 0.97065 1.20580 0.91814 0.86807 0.95431 1.44282 1.19228 1.27200 1.42609 1.19483 0.90362 0.91279 1.37901 0.92012 1.25747 0.99784 0.96112 1.02854 1.70159 1.34342 1.04252 1.49147 0.85344 0.78987 0.77898 0.78695 1.21347 1.22227 1.19514 1.21051 0.90896 0.95896 0.90525 1.21871 0.96680 0.95780 1.00691 1.21454 1.00963 0.97146 0.92249 1.21771 1.01378 0.97008 0.99745 1.21769 1.01607 0.94892 1.00413 0.88373 0.87908 0.87681 0.74668 0.75280 0.91005 0.92268 0.91590 0.93579 0.92056 0.93644 0.91342 0.97647 0.93592 0.94215 0.96171 0.93401 0.89946 0.92748 0.89664 0.91847 0.91626 0.93745 0.93101 0.92160 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 10.39 71.23 0.74 -0.66 16 2 C 0.51 8.67 6.53 87.65 0.57 9.25 16 3 O -0.58 -14.34 14.24 -3.04 -0.04 -14.38 16 4 N -0.71 -11.62 3.93 -446.09 -1.76 -13.38 16 5 C 0.13 2.54 2.35 44.24 0.10 2.65 16 6 H 0.11 2.09 7.58 -2.39 -0.02 2.08 16 7 C 0.52 11.37 6.20 87.66 0.54 11.92 16 8 O -0.56 -15.12 15.72 -3.03 -0.05 -15.16 16 9 N -0.71 -15.11 4.94 -463.07 -2.29 -17.40 16 10 C 0.14 3.43 4.57 86.38 0.39 3.82 16 11 C -0.05 -1.51 0.53 -52.16 -0.03 -1.53 16 12 C -0.14 -3.63 7.54 71.98 0.54 -3.09 16 13 C -0.12 -3.91 4.75 30.67 0.15 -3.76 16 14 C 0.18 8.16 4.82 86.36 0.42 8.57 16 15 N -0.61 -29.57 2.99 -699.10 -2.09 -31.66 16 16 C -0.26 -14.14 9.58 84.03 0.81 -13.33 16 17 H 0.06 3.31 7.88 -2.91 -0.02 3.29 16 18 C -0.05 -2.74 4.93 84.86 0.42 -2.33 16 19 N -0.93 -54.52 11.19 21.65 0.24 -54.28 16 20 Si 0.96 44.79 29.58 68.60 2.03 46.82 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 C 0.14 5.57 6.04 86.36 0.52 6.10 16 25 C -0.11 -3.38 4.91 30.67 0.15 -3.23 16 26 C -0.10 -1.78 2.73 -10.79 -0.03 -1.81 16 27 C -0.14 -2.49 8.80 71.98 0.63 -1.85 16 28 C -0.13 -2.45 7.80 71.98 0.56 -1.89 16 29 H 0.10 0.41 7.91 -2.39 -0.02 0.39 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.42 6.09 7.57 -92.71 -0.70 5.39 16 33 H 0.41 7.83 6.16 -92.70 -0.57 7.26 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.05 1.51 4.98 -2.39 -0.01 1.50 16 38 H 0.06 1.41 6.86 -2.39 -0.02 1.39 16 39 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.07 1.97 6.82 -2.38 -0.02 1.95 16 41 H 0.01 0.26 6.69 -2.39 -0.02 0.25 16 42 H 0.05 2.44 6.08 -2.38 -0.01 2.43 16 43 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 44 H 0.02 0.80 6.69 -2.39 -0.02 0.79 16 45 H 0.05 1.89 7.94 -2.39 -0.02 1.87 16 46 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.06 1.02 7.30 -2.39 -0.02 1.00 16 50 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.04 0.91 7.35 -2.39 -0.02 0.90 16 52 H 0.05 1.08 7.87 -2.39 -0.02 1.06 16 53 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 54 H 0.05 1.06 5.64 -2.39 -0.01 1.04 16 Total: -1.00 -68.71 405.59 2.17 -66.55 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -0.37 Total: 24.07 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 6.49 Total: 8.83 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -5.89 Total: -116.72 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.09 Total: -29.55 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -68.71 2.17 -66.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671862542.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.622 kcal (2) G-P(sol) polarization free energy of solvation -68.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds