Wall clock time and date at job start Sat Apr 11 2020 05:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47542 * 2 1 4 4 C 1.53005 * 109.47540 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46401 * 304.99898 * 4 3 2 6 6 C 1.53001 * 109.46938 * 64.99872 * 4 3 2 7 7 C 1.52999 * 109.47175 * 185.00022 * 4 3 2 8 8 C 1.50697 * 109.47060 * 174.99833 * 7 4 3 9 9 O 1.21288 * 119.99805 * 359.97438 * 8 7 4 10 10 N 1.34777 * 120.00214 * 179.97438 * 8 7 4 11 11 C 1.46501 * 120.00062 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.53420 * 34.89931 * 11 10 8 13 13 C 1.53117 * 109.50084 * 274.80125 * 11 10 8 14 14 C 1.53124 * 109.15753 * 182.40435 * 13 11 10 15 15 C 1.53036 * 109.27586 * 57.65791 * 14 13 11 16 16 N 1.46849 * 109.52256 * 300.81463 * 15 14 13 17 17 C 1.46901 * 110.99704 * 185.84214 * 16 15 14 18 18 C 1.50701 * 109.46630 * 169.43837 * 17 16 15 19 19 O 1.21292 * 120.00442 * 353.77845 * 18 17 16 20 20 N 1.34776 * 119.99908 * 173.78380 * 18 17 16 21 21 C 1.37102 * 120.00351 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99446 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00104 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00127 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99874 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46929 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47194 * 119.99883 * 25 23 21 28 28 H 1.48500 * 109.46816 * 239.99935 * 25 23 21 29 29 C 1.46844 * 111.19514 * 61.74642 * 16 15 14 30 30 H 1.09007 * 109.46895 * 60.00316 * 1 2 3 31 31 H 1.09003 * 109.47441 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47444 * 300.00373 * 1 2 3 33 33 H 1.08999 * 109.47444 * 239.99627 * 2 1 3 34 34 H 1.09004 * 109.47176 * 120.00130 * 2 1 3 35 35 H 1.08999 * 109.47056 * 59.99389 * 3 2 1 36 36 H 1.09000 * 109.47056 * 299.99491 * 3 2 1 37 37 H 1.08994 * 109.47064 * 59.99931 * 6 4 3 38 38 H 1.09001 * 109.46598 * 180.02562 * 6 4 3 39 39 H 1.09003 * 109.47024 * 299.99818 * 6 4 3 40 40 H 1.08999 * 109.47064 * 54.99889 * 7 4 3 41 41 H 1.08998 * 109.46733 * 294.99930 * 7 4 3 42 42 H 0.96999 * 119.99689 * 0.02562 * 10 8 7 43 43 H 1.08993 * 109.52868 * 302.30990 * 13 11 10 44 44 H 1.09004 * 109.52340 * 62.44129 * 13 11 10 45 45 H 1.08997 * 109.50272 * 177.59639 * 14 13 11 46 46 H 1.09000 * 109.50301 * 297.71581 * 14 13 11 47 47 H 1.09001 * 109.45980 * 180.80653 * 15 14 13 48 48 H 1.08992 * 109.46255 * 60.83439 * 15 14 13 49 49 H 1.08995 * 109.47080 * 289.43447 * 17 16 15 50 50 H 1.08998 * 109.47290 * 49.44012 * 17 16 15 51 51 H 0.97002 * 119.99761 * 359.97438 * 20 18 17 52 52 H 0.97003 * 119.99804 * 179.97438 * 24 23 21 53 53 H 1.09005 * 109.46358 * 58.27099 * 29 16 15 54 54 H 1.09002 * 109.46511 * 178.24680 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9329 0.8531 0.8427 6 6 4.0806 0.8325 -1.3064 7 6 4.0801 2.8794 0.1264 8 6 5.5819 2.8704 0.2506 9 8 6.1849 1.8181 0.2401 10 7 6.2549 4.0316 0.3733 11 6 7.7150 4.0228 0.4935 12 1 8.1255 3.2133 -0.1101 13 6 8.1060 3.8165 1.9594 14 6 9.6312 3.8686 2.0848 15 6 10.1365 5.2103 1.5496 16 7 9.7377 5.3597 0.1442 17 6 10.3231 6.5722 -0.4431 18 6 10.1123 6.5597 -1.9352 19 8 9.6336 5.5831 -2.4720 20 7 10.4559 7.6338 -2.6733 21 6 10.2646 7.6223 -4.0309 22 1 9.8383 6.7527 -4.5087 23 6 10.6183 8.7298 -4.7917 24 7 11.1357 9.7885 -4.2100 25 14 10.3571 8.7144 -6.6413 26 1 9.7638 7.4148 -7.0465 27 1 9.4388 9.8180 -7.0207 28 1 11.6615 8.8979 -7.3269 29 6 8.2759 5.3600 0.0043 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6768 1.9562 -0.8900 37 1 3.7176 1.4218 -2.1484 38 1 5.1706 0.8321 -1.3057 39 1 3.7173 -0.1913 -1.3959 40 1 3.6451 3.3431 1.0117 41 1 3.7921 3.4458 -0.7592 42 1 5.7726 4.8731 0.3821 43 1 7.6632 4.6041 2.5689 44 1 7.7446 2.8460 2.2997 45 1 9.9139 3.7649 3.1324 46 1 10.0718 3.0567 1.5063 47 1 11.2234 5.2449 1.6243 48 1 9.7062 6.0211 2.1374 49 1 9.8419 7.4518 -0.0155 50 1 11.3911 6.6014 -0.2272 51 1 10.8385 8.4150 -2.2440 52 1 11.3830 10.5616 -4.7413 53 1 7.8543 6.1702 0.5994 54 1 8.0113 5.5033 -1.0433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690035491.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:50 Heat of formation + Delta-G solvation = -123.023573 kcal Electronic energy + Delta-G solvation = -29988.740127 eV Core-core repulsion = 25958.161828 eV Total energy + Delta-G solvation = -4030.578299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.28461 -40.43164 -39.16538 -37.62954 -36.06627 -35.66854 -33.82332 -33.48154 -33.21039 -31.01815 -29.03733 -28.47356 -27.45054 -26.51257 -24.21249 -24.09077 -22.73049 -21.47101 -21.05878 -20.95161 -20.56349 -19.86109 -18.09967 -17.72296 -17.42000 -16.61983 -16.55106 -16.42370 -16.25898 -16.01323 -15.72947 -15.41895 -15.18646 -14.96656 -14.80452 -14.68922 -14.42433 -14.25177 -14.10306 -13.79574 -13.55311 -13.25775 -13.21816 -13.05806 -12.89801 -12.71777 -12.59200 -12.40809 -12.37629 -12.33624 -12.13251 -11.91605 -11.82262 -11.78172 -11.64397 -11.58030 -11.48854 -11.44064 -11.26909 -10.64475 -10.29974 -10.03358 -9.96781 -9.19705 -8.46549 -5.94616 1.35456 1.40883 1.54646 1.69507 2.06585 2.11103 2.29021 2.84728 3.20539 3.41244 3.66555 3.79490 3.84875 3.86728 3.97807 4.05152 4.16111 4.21707 4.29296 4.30084 4.34181 4.44062 4.44876 4.56073 4.57520 4.64188 4.69474 4.71843 4.72878 4.74146 4.81139 4.93186 4.94813 4.97673 4.99073 5.06192 5.06910 5.18114 5.22546 5.25302 5.30018 5.37792 5.41460 5.43614 5.47839 5.56600 5.59515 5.89345 6.08187 6.23606 6.59491 6.62160 7.14264 7.32488 7.57934 8.14555 8.70944 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010557 B = 0.002312 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.677918 B =12106.250522 C =14278.785619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.108 4.108 4 C -0.072 4.072 5 H 0.062 0.938 6 C -0.154 4.154 7 C -0.131 4.131 8 C 0.507 3.493 9 O -0.579 6.579 10 N -0.719 5.719 11 C 0.158 3.842 12 H 0.051 0.949 13 C -0.118 4.118 14 C -0.109 4.109 15 C 0.054 3.946 16 N -0.538 5.538 17 C 0.061 3.939 18 C 0.439 3.561 19 O -0.616 6.616 20 N -0.574 5.574 21 C -0.330 4.330 22 H 0.076 0.924 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.276 1.276 27 H -0.269 1.269 28 H -0.272 1.272 29 C 0.060 3.940 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.041 0.959 39 H 0.058 0.942 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.412 0.588 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.099 0.901 46 H 0.053 0.947 47 H 0.088 0.912 48 H 0.053 0.947 49 H 0.072 0.928 50 H 0.113 0.887 51 H 0.396 0.604 52 H 0.277 0.723 53 H 0.052 0.948 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.778 -8.842 16.390 24.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.145 4.145 4 C -0.091 4.091 5 H 0.080 0.920 6 C -0.211 4.211 7 C -0.171 4.171 8 C 0.296 3.704 9 O -0.458 6.458 10 N -0.371 5.371 11 C 0.052 3.948 12 H 0.070 0.930 13 C -0.156 4.156 14 C -0.147 4.147 15 C -0.073 4.073 16 N -0.263 5.263 17 C -0.070 4.070 18 C 0.227 3.773 19 O -0.502 6.502 20 N -0.212 5.212 21 C -0.459 4.459 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.201 1.201 27 H -0.194 1.194 28 H -0.197 1.197 29 C -0.069 4.069 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.140 0.860 41 H 0.125 0.875 42 H 0.248 0.752 43 H 0.099 0.901 44 H 0.076 0.924 45 H 0.117 0.883 46 H 0.072 0.928 47 H 0.107 0.893 48 H 0.071 0.929 49 H 0.090 0.910 50 H 0.131 0.869 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.070 0.930 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.420 -10.450 15.690 24.355 hybrid contribution 0.049 1.427 -0.743 1.609 sum -15.371 -9.023 14.947 23.261 Atomic orbital electron populations 1.21765 0.95161 1.01809 1.02077 1.21581 0.96315 0.96907 1.01812 1.21628 0.92780 0.97226 1.02900 1.20857 0.95847 0.94124 0.98234 0.91982 1.21964 1.01003 1.00924 0.97188 1.21830 0.89058 0.99969 1.06196 1.21399 0.91612 0.82964 0.74455 1.90660 1.71538 1.32327 1.51308 1.45997 1.07040 1.09651 1.74426 1.20661 0.79974 0.97098 0.97034 0.93031 1.21874 0.96883 1.02159 0.94702 1.21533 0.94393 0.96867 1.01953 1.22271 1.01553 0.97675 0.85793 1.61279 1.09146 1.37783 1.18111 1.21724 1.02320 0.92340 0.90618 1.20852 0.82926 0.83325 0.90214 1.90503 1.49879 1.35383 1.74420 1.41936 1.56330 1.15738 1.07176 1.19640 1.40721 1.01915 0.83646 0.90638 1.25984 0.96258 0.94406 1.04570 1.69672 1.42771 1.05440 1.38150 0.84917 0.78308 0.78170 0.77221 1.20089 1.19443 1.19681 1.22153 0.87829 0.95830 1.01076 0.92610 0.92680 0.92254 0.92406 0.92408 0.90590 0.91325 0.92855 0.94016 0.92272 0.85964 0.87465 0.75174 0.90086 0.92408 0.88270 0.92829 0.89324 0.92920 0.91035 0.86857 0.76987 0.91343 0.93039 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 71.98 0.71 -0.94 16 2 C -0.13 -1.71 5.69 30.59 0.17 -1.54 16 3 C -0.11 -1.39 4.68 30.59 0.14 -1.25 16 4 C -0.07 -1.29 2.04 -10.79 -0.02 -1.31 16 5 H 0.06 1.31 7.95 -2.39 -0.02 1.29 16 6 C -0.15 -3.42 8.69 71.98 0.63 -2.79 16 7 C -0.13 -2.15 5.17 29.85 0.15 -1.99 16 8 C 0.51 12.88 7.51 87.66 0.66 13.54 16 9 O -0.58 -19.79 13.63 -3.06 -0.04 -19.83 16 10 N -0.72 -16.97 5.08 -442.28 -2.25 -19.21 16 11 C 0.16 4.55 2.62 45.04 0.12 4.67 16 12 H 0.05 1.98 7.58 -2.39 -0.02 1.96 16 13 C -0.12 -2.68 5.58 30.67 0.17 -2.51 16 14 C -0.11 -2.34 6.09 30.65 0.19 -2.15 16 15 C 0.05 1.22 5.46 86.33 0.47 1.69 16 16 N -0.54 -17.21 4.35 -900.94 -3.92 -21.13 16 17 C 0.06 2.06 5.45 85.56 0.47 2.52 16 18 C 0.44 20.85 7.31 87.66 0.64 21.49 16 19 O -0.62 -34.50 14.28 -3.07 -0.04 -34.55 16 20 N -0.57 -29.26 5.29 -306.99 -1.62 -30.88 16 21 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 22 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 23 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 24 N -0.92 -49.27 13.05 21.66 0.28 -48.99 16 25 Si 0.99 43.15 29.55 68.60 2.03 45.17 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 29 C 0.06 1.86 4.59 86.33 0.40 2.26 16 30 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.85 6.57 -2.39 -0.02 0.83 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 38 H 0.04 1.22 5.95 -2.39 -0.01 1.21 16 39 H 0.06 1.20 6.57 -2.39 -0.02 1.18 16 40 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.41 7.14 8.60 -92.71 -0.80 6.35 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.09 1.81 8.01 -2.39 -0.02 1.79 16 48 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 50 H 0.11 3.35 7.98 -2.39 -0.02 3.33 16 51 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 52 H 0.28 13.88 8.31 -92.71 -0.77 13.10 16 53 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 54 H 0.06 2.34 6.05 -2.39 -0.01 2.32 16 Total: -1.00 -74.24 421.39 -0.03 -74.27 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -0.65 Total: 41.58 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 6.18 Total: 13.56 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -7.50 Total: -120.21 kcal Atomic # 8 Polarization: -54.30 SS G_CDS: -0.09 Total: -54.38 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -74.24 -0.03 -74.27 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690035491.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.752 kcal (2) G-P(sol) polarization free energy of solvation -74.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds