Wall clock time and date at job start Sat Apr 11 2020 05:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.47157 * 2 1 4 4 C 1.53001 * 109.46632 * 239.99840 * 2 1 3 5 5 N 1.46897 * 109.47257 * 64.37850 * 4 2 1 6 6 C 1.47009 * 111.00074 * 210.31345 * 5 4 2 7 7 C 1.53098 * 109.25938 * 177.60636 * 6 5 4 8 8 O 1.43018 * 109.26120 * 56.84659 * 7 6 5 9 9 C 1.43013 * 113.73941 * 301.33353 * 8 7 6 10 10 C 1.47020 * 111.00263 * 86.67601 * 5 4 2 11 11 C 1.50704 * 109.46989 * 120.00300 * 2 1 3 12 12 O 1.21277 * 119.99879 * 121.85311 * 11 2 1 13 13 N 1.34775 * 119.99797 * 301.84686 * 11 2 1 14 14 C 1.47022 * 125.64945 * 354.91200 * 13 11 2 15 15 C 1.54322 * 107.27012 * 181.01956 * 14 13 11 16 16 C 1.55154 * 102.94427 * 22.19353 * 15 14 13 17 17 H 1.09003 * 111.03353 * 82.58243 * 16 15 14 18 18 C 1.52997 * 111.00481 * 206.42248 * 16 15 14 19 19 N 1.46505 * 109.47210 * 287.19339 * 18 16 15 20 20 C 1.36938 * 119.99839 * 180.02562 * 19 18 16 21 21 H 1.07996 * 119.99961 * 0.02562 * 20 19 18 22 22 C 1.38807 * 119.99551 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00291 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99845 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46892 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.46964 * 299.99576 * 24 22 20 27 27 H 1.48493 * 109.47148 * 59.99977 * 24 22 20 28 28 C 1.47423 * 125.64678 * 174.86563 * 13 11 2 29 29 H 1.09000 * 109.46712 * 296.33888 * 1 2 3 30 30 H 1.08994 * 109.47025 * 56.33727 * 1 2 3 31 31 H 1.08999 * 109.46984 * 176.33705 * 1 2 3 32 32 H 1.09004 * 109.46927 * 188.39943 * 3 2 1 33 33 H 1.08997 * 109.47424 * 308.39738 * 3 2 1 34 34 H 1.09000 * 109.47373 * 68.40146 * 3 2 1 35 35 H 1.09003 * 109.46863 * 184.37614 * 4 2 1 36 36 H 1.08997 * 109.47353 * 304.37235 * 4 2 1 37 37 H 1.08997 * 109.50710 * 297.54130 * 6 5 4 38 38 H 1.08999 * 109.50429 * 57.67185 * 6 5 4 39 39 H 1.09009 * 109.50827 * 296.91765 * 7 6 5 40 40 H 1.09001 * 109.54634 * 176.81115 * 7 6 5 41 41 H 1.08993 * 109.50980 * 298.73379 * 9 8 7 42 42 H 1.09000 * 109.54421 * 178.62024 * 9 8 7 43 43 H 1.08995 * 109.50749 * 302.33224 * 10 5 4 44 44 H 1.09000 * 109.50047 * 62.46092 * 10 5 4 45 45 H 1.09004 * 109.88213 * 300.44032 * 14 13 11 46 46 H 1.09002 * 109.88085 * 61.60452 * 14 13 11 47 47 H 1.08998 * 110.72293 * 263.82779 * 15 14 13 48 48 H 1.09008 * 110.71821 * 140.55486 * 15 14 13 49 49 H 1.09001 * 109.47140 * 167.19615 * 18 16 15 50 50 H 1.08993 * 109.47303 * 47.19661 * 18 16 15 51 51 H 0.97001 * 119.99658 * 0.02562 * 19 18 16 52 52 H 0.96997 * 119.99966 * 0.02562 * 23 22 20 53 53 H 1.08993 * 110.36512 * 37.07405 * 28 13 11 54 54 H 1.09005 * 110.45845 * 274.79397 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6385 0.0295 -2.4464 6 6 1.4389 -0.8713 -3.5909 7 6 0.9649 -0.0571 -4.7976 8 8 1.9191 0.9707 -5.0776 9 6 2.1376 1.8667 -3.9845 10 6 2.6235 1.0720 -2.7695 11 6 2.0324 -0.7105 1.2305 12 8 2.7571 -1.6766 1.1194 13 7 1.6763 -0.2722 2.4542 14 6 0.8953 0.9411 2.7361 15 6 0.7565 1.0507 4.2691 16 6 1.9471 0.2017 4.7875 17 1 2.8700 0.7818 4.7890 18 6 1.6543 -0.3611 6.1798 19 7 1.7253 0.7183 7.1677 20 6 1.4979 0.4510 8.4914 21 1 1.2666 -0.5556 8.8070 22 6 1.5647 1.4739 9.4273 23 7 1.8470 2.7006 9.0427 24 14 1.2552 1.1092 11.2331 25 1 1.3855 2.3616 12.0204 26 1 -0.1143 0.5596 11.3994 27 1 2.2489 0.1166 11.7150 28 6 2.0047 -0.9305 3.7318 29 1 -0.3633 0.4560 0.9210 30 1 -0.3633 0.5696 -0.8553 31 1 -0.3633 -1.0256 -0.0657 32 1 3.1197 1.4460 -0.1501 33 1 1.5594 1.9978 -0.8054 34 1 1.8045 1.9111 0.9555 35 1 3.1272 -0.7897 -1.2110 36 1 1.6141 -1.7238 -1.2893 37 1 2.3793 -1.3665 -3.8327 38 1 0.6873 -1.6193 -3.3385 39 1 -0.0018 0.3948 -4.5749 40 1 0.8697 -0.7113 -5.6643 41 1 1.2052 2.3744 -3.7380 42 1 2.8910 2.6038 -4.2622 43 1 2.7367 1.7424 -1.9176 44 1 3.5829 0.6078 -2.9982 45 1 1.4165 1.8161 2.3475 46 1 -0.0911 0.8614 2.2793 47 1 -0.1919 0.6286 4.6017 48 1 0.8527 2.0874 4.5919 49 1 2.3906 -1.1266 6.4245 50 1 0.6565 -0.7997 6.1919 51 1 1.9334 1.6223 6.8842 52 1 2.0081 2.8899 8.1051 53 1 3.0054 -1.3604 3.6907 54 1 1.2702 -1.7021 3.9626 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690718293.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:53 Heat of formation + Delta-G solvation = -66.535738 kcal Electronic energy + Delta-G solvation = -30867.237380 eV Core-core repulsion = 26839.108578 eV Total energy + Delta-G solvation = -4028.128803 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.86583 -40.51711 -39.11689 -37.60587 -36.80331 -35.17143 -33.80154 -32.23388 -31.66194 -30.38988 -29.18409 -28.37346 -27.01468 -25.94722 -24.92781 -24.81838 -24.12668 -22.28473 -21.49649 -21.34995 -19.96715 -19.36152 -17.78898 -17.66016 -17.35214 -17.16922 -16.76897 -16.41729 -16.26008 -16.05439 -15.97957 -15.60230 -15.54716 -15.36651 -15.09198 -14.64999 -14.42717 -14.24869 -14.20389 -13.95122 -13.83912 -13.44809 -13.34079 -13.06164 -12.84727 -12.73945 -12.65228 -12.52629 -12.39721 -12.24749 -12.11044 -12.00015 -11.90377 -11.86529 -11.60938 -11.53077 -11.39648 -11.25200 -10.92300 -10.83612 -10.50744 -9.70917 -9.46311 -9.11474 -8.39817 -5.33893 1.50459 1.59524 1.68976 1.81003 1.85605 2.69844 2.71296 2.97785 3.28207 3.39715 3.48444 3.55574 3.69625 3.73793 3.82894 3.93101 4.01460 4.05047 4.12760 4.13765 4.20896 4.25273 4.25816 4.34408 4.43949 4.51750 4.54534 4.57638 4.61419 4.65819 4.68976 4.72930 4.78715 4.80792 4.82073 4.90206 4.91305 4.94867 5.02788 5.03895 5.08020 5.15864 5.17242 5.27846 5.36668 5.43170 5.58323 5.84083 5.91417 6.19727 6.43787 6.50788 7.01765 7.09298 7.99572 8.10143 9.12441 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.033826 B = 0.001889 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.577225 B =14818.711044 C =15169.267735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.059 4.059 3 C -0.155 4.155 4 C 0.087 3.913 5 N -0.524 5.524 6 C 0.017 3.983 7 C 0.065 3.935 8 O -0.409 6.409 9 C 0.064 3.936 10 C -0.004 4.004 11 C 0.532 3.468 12 O -0.590 6.590 13 N -0.611 5.611 14 C 0.090 3.910 15 C -0.118 4.118 16 C -0.097 4.097 17 H 0.074 0.926 18 C 0.170 3.830 19 N -0.752 5.752 20 C -0.337 4.337 21 H 0.064 0.936 22 C -0.102 4.102 23 N -0.973 5.973 24 Si 1.127 2.873 25 H -0.292 1.292 26 H -0.277 1.277 27 H -0.281 1.281 28 C 0.118 3.882 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.030 0.970 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.026 0.974 45 H 0.096 0.904 46 H 0.104 0.896 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.014 0.986 50 H 0.027 0.973 51 H 0.363 0.637 52 H 0.245 0.755 53 H 0.063 0.937 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.813 -2.194 -29.284 29.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.062 4.062 3 C -0.212 4.212 4 C -0.042 4.042 5 N -0.248 5.248 6 C -0.112 4.112 7 C -0.011 4.011 8 O -0.328 6.328 9 C -0.013 4.013 10 C -0.131 4.131 11 C 0.322 3.678 12 O -0.470 6.470 13 N -0.343 5.343 14 C -0.030 4.030 15 C -0.156 4.156 16 C -0.117 4.117 17 H 0.093 0.907 18 C 0.044 3.956 19 N -0.397 5.397 20 C -0.468 4.468 21 H 0.082 0.918 22 C -0.294 4.294 23 N -0.621 5.621 24 Si 0.952 3.048 25 H -0.218 1.218 26 H -0.203 1.203 27 H -0.207 1.207 28 C -0.005 4.005 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.128 0.872 41 H 0.088 0.912 42 H 0.127 0.873 43 H 0.132 0.868 44 H 0.045 0.955 45 H 0.114 0.886 46 H 0.122 0.878 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.032 0.968 50 H 0.045 0.955 51 H 0.196 0.804 52 H 0.056 0.944 53 H 0.082 0.918 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.907 -2.075 -27.945 28.448 hybrid contribution 1.319 -1.239 -1.131 2.134 sum -3.588 -3.314 -29.076 29.483 Atomic orbital electron populations 1.21977 0.90398 1.02610 1.04283 1.20572 0.98992 0.96869 0.89809 1.22383 1.00845 0.93200 1.04752 1.21744 0.97711 0.95982 0.88745 1.62083 1.45692 1.13705 1.03340 1.22879 1.00965 0.95816 0.91495 1.22765 0.91853 0.89427 0.97074 1.87961 1.62988 1.42950 1.38888 1.22786 1.01967 0.91476 0.85069 1.23389 0.93036 0.95856 1.00836 1.20953 0.79107 0.83552 0.84229 1.90669 1.39061 1.30434 1.86863 1.48495 1.54109 1.26691 1.05016 1.22804 0.97290 0.87129 0.95807 1.22648 0.98094 1.01093 0.93802 1.22343 0.99573 0.96631 0.93124 0.90746 1.20572 0.97665 0.90369 0.87032 1.42469 1.86377 1.06991 1.03870 1.20373 1.44009 0.96306 0.86133 0.91755 1.27179 1.00599 0.92709 1.08889 1.70997 1.53181 1.20695 1.17207 0.82632 0.76866 0.74971 0.70347 1.21799 1.20263 1.20683 1.22056 1.01027 0.95188 0.82270 0.90693 0.88961 0.93359 0.93021 0.88132 0.90436 0.95267 0.91393 0.95184 0.88535 0.91386 0.87171 0.91221 0.87304 0.86789 0.95527 0.88630 0.87818 0.90468 0.89973 0.96797 0.95520 0.80442 0.94414 0.91808 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.16 71.98 0.59 -1.31 16 2 C -0.06 -1.04 0.57 -52.93 -0.03 -1.07 16 3 C -0.16 -2.14 6.63 71.98 0.48 -1.66 16 4 C 0.09 1.63 3.59 86.30 0.31 1.94 16 5 N -0.52 -7.55 3.88 -895.22 -3.47 -11.02 16 6 C 0.02 0.22 5.52 86.31 0.48 0.70 16 7 C 0.07 0.76 7.01 72.01 0.50 1.27 16 8 O -0.41 -6.53 10.83 -148.98 -1.61 -8.14 16 9 C 0.06 0.75 7.01 72.02 0.50 1.26 16 10 C 0.00 -0.05 4.90 86.31 0.42 0.38 16 11 C 0.53 13.71 6.58 87.66 0.58 14.29 16 12 O -0.59 -20.18 16.15 -3.02 -0.05 -20.23 16 13 N -0.61 -14.74 3.31 -811.79 -2.69 -17.43 16 14 C 0.09 1.69 5.45 86.73 0.47 2.16 16 15 C -0.12 -2.93 6.37 31.78 0.20 -2.73 16 16 C -0.10 -2.93 3.05 -9.40 -0.03 -2.96 16 17 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 18 C 0.17 6.66 5.71 86.38 0.49 7.15 16 19 N -0.75 -37.18 5.55 -343.46 -1.91 -39.09 16 20 C -0.34 -18.87 9.99 84.03 0.84 -18.03 16 21 H 0.06 3.54 7.83 -2.91 -0.02 3.51 16 22 C -0.10 -5.89 5.50 84.86 0.47 -5.42 16 23 N -0.97 -59.88 13.70 21.65 0.30 -59.58 16 24 Si 1.13 51.44 29.92 68.60 2.05 53.49 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 28 C 0.12 3.29 6.40 86.86 0.56 3.85 16 29 H 0.07 0.94 4.39 -2.39 -0.01 0.93 16 30 H 0.09 1.07 7.84 -2.39 -0.02 1.05 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.79 7.39 -2.38 -0.02 0.78 16 33 H 0.10 1.03 6.29 -2.39 -0.02 1.01 16 34 H 0.08 1.01 4.25 -2.39 -0.01 1.00 16 35 H 0.03 0.68 7.62 -2.39 -0.02 0.66 16 36 H 0.07 1.40 7.69 -2.39 -0.02 1.38 16 37 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.10 1.08 8.00 -2.39 -0.02 1.06 16 39 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.11 1.29 4.01 -2.39 -0.01 1.28 16 44 H 0.03 0.44 8.11 -2.39 -0.02 0.42 16 45 H 0.10 1.49 5.36 -2.38 -0.01 1.47 16 46 H 0.10 1.48 5.19 -2.39 -0.01 1.47 16 47 H 0.08 1.97 7.91 -2.39 -0.02 1.95 16 48 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 49 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.03 1.04 7.97 -2.39 -0.02 1.02 16 51 H 0.36 18.30 6.50 -92.71 -0.60 17.69 16 52 H 0.25 14.91 6.77 -92.71 -0.63 14.29 16 53 H 0.06 1.96 7.99 -2.39 -0.02 1.94 16 54 H 0.07 2.00 8.03 -2.38 -0.02 1.98 16 Total: -1.00 -72.91 399.52 -0.11 -73.02 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.43 Total: 29.17 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 6.83 Total: -0.19 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -7.77 Total: -127.12 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -1.66 Total: -28.37 kcal Atomic # 14 Polarization: 51.44 SS G_CDS: 2.05 Total: 53.49 kcal Total: -72.91 -0.11 -73.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690718293.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.485 kcal (2) G-P(sol) polarization free energy of solvation -72.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds