Wall clock time and date at job start Sat Apr 11 2020 05:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46773 * 2 1 4 4 C 1.53003 * 109.46773 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47290 * 304.99401 * 4 3 2 6 6 C 1.53002 * 109.47461 * 64.99676 * 4 3 2 7 7 C 1.53000 * 109.47197 * 186.40262 * 6 4 3 8 8 C 1.50701 * 109.47197 * 185.00133 * 4 3 2 9 9 O 1.21283 * 119.99469 * 264.69301 * 8 4 3 10 10 N 1.34770 * 120.00315 * 84.69256 * 8 4 3 11 11 C 1.46496 * 120.00008 * 354.98604 * 10 8 4 12 12 C 1.46507 * 119.99925 * 174.99035 * 10 8 4 13 13 C 1.52997 * 109.47082 * 269.99775 * 12 10 8 14 14 H 1.08998 * 112.78953 * 284.19262 * 13 12 10 15 15 C 1.53514 * 113.47756 * 153.38136 * 13 12 10 16 16 C 1.53514 * 83.57476 * 219.20846 * 15 13 12 17 17 N 1.47480 * 113.47550 * 54.99889 * 13 12 10 18 18 C 1.46904 * 111.00370 * 253.47253 * 17 13 12 19 19 C 1.50697 * 109.47047 * 198.35761 * 18 17 13 20 20 O 1.21290 * 120.00091 * 354.93395 * 19 18 17 21 21 N 1.34783 * 119.99508 * 175.20658 * 19 18 17 22 22 C 1.37103 * 119.99369 * 179.72304 * 21 19 18 23 23 H 1.07997 * 120.00170 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99403 * 180.02562 * 22 21 19 25 25 N 1.31409 * 120.00404 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99589 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46848 * 90.00103 * 26 24 22 28 28 H 1.48501 * 109.46856 * 209.99780 * 26 24 22 29 29 H 1.48497 * 109.47352 * 329.99967 * 26 24 22 30 30 H 1.09002 * 109.47182 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47763 * 300.00295 * 1 2 3 32 32 H 1.08996 * 109.47140 * 60.00702 * 1 2 3 33 33 H 1.08993 * 109.47280 * 239.99485 * 2 1 3 34 34 H 1.09004 * 109.46742 * 119.99807 * 2 1 3 35 35 H 1.08993 * 109.47638 * 59.99704 * 3 2 1 36 36 H 1.08995 * 109.47150 * 299.99254 * 3 2 1 37 37 H 1.09004 * 109.47003 * 306.40499 * 6 4 3 38 38 H 1.09002 * 109.47041 * 66.40221 * 6 4 3 39 39 H 1.09003 * 109.47271 * 302.09539 * 7 6 4 40 40 H 1.09009 * 109.46877 * 62.09173 * 7 6 4 41 41 H 1.08994 * 109.47150 * 182.08935 * 7 6 4 42 42 H 1.09000 * 109.47528 * 273.70060 * 11 10 8 43 43 H 1.08999 * 109.47352 * 33.70775 * 11 10 8 44 44 H 1.09009 * 109.47199 * 153.70261 * 11 10 8 45 45 H 1.09004 * 109.47067 * 150.00107 * 12 10 8 46 46 H 1.08998 * 109.47106 * 29.99814 * 12 10 8 47 47 H 1.08996 * 114.17126 * 105.56342 * 15 13 12 48 48 H 1.09004 * 114.33825 * 332.86872 * 15 13 12 49 49 H 1.08997 * 113.47869 * 271.26117 * 16 15 13 50 50 H 1.09000 * 113.47206 * 140.78902 * 16 15 13 51 51 H 1.08998 * 109.47119 * 78.35121 * 18 17 13 52 52 H 1.09006 * 109.46769 * 318.35447 * 18 17 13 53 53 H 0.96992 * 120.00003 * 359.72389 * 21 19 18 54 54 H 0.96998 * 120.00553 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9330 0.8532 0.8428 6 6 4.0806 0.8326 -1.3064 7 6 5.6021 0.6856 -1.2404 8 6 4.0723 2.8579 0.1245 9 8 4.3664 3.4861 -0.8704 10 7 4.1946 3.4256 1.3407 11 6 3.7368 2.7084 2.5332 12 6 4.7853 4.7600 1.4701 13 6 6.2980 4.6318 1.6604 14 1 6.5715 4.3127 2.6661 15 6 7.0818 5.8589 1.1739 16 6 8.0827 4.8070 0.6754 17 7 6.9601 3.8538 0.5968 18 6 7.3603 2.5276 1.0859 19 6 8.4008 1.9453 0.1644 20 8 8.7056 2.5308 -0.8532 21 7 8.9886 0.7711 0.4682 22 6 9.9311 0.2385 -0.3731 23 1 10.2028 0.7600 -1.2789 24 6 10.5367 -0.9723 -0.0601 25 7 10.2065 -1.6067 1.0423 26 14 11.8204 -1.6983 -1.2067 27 1 13.1667 -1.2080 -0.8162 28 1 11.7867 -3.1800 -1.1126 29 1 11.5283 -1.2842 -2.6025 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9562 -0.8900 37 1 3.6267 -0.1478 -1.4515 38 1 3.8142 1.4832 -2.1394 39 1 6.0538 1.6607 -1.0580 40 1 5.8666 0.0055 -0.4305 41 1 5.9698 0.2857 -2.1853 42 1 2.6752 2.9008 2.6879 43 1 3.8962 1.6387 2.3974 44 1 4.2987 3.0519 3.4019 45 1 4.3523 5.2669 2.3325 46 1 4.5801 5.3372 0.5685 47 1 7.4620 6.4922 1.9754 48 1 6.5903 6.4195 0.3786 49 1 8.8323 4.5346 1.4183 50 1 8.5174 5.0469 -0.2949 51 1 6.4899 1.8720 1.1117 52 1 7.7750 2.6205 2.0897 53 1 8.7448 0.3029 1.2819 54 1 10.6295 -2.4517 1.2610 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691405520.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:13 Heat of formation + Delta-G solvation = -70.581747 kcal Electronic energy + Delta-G solvation = -32506.946238 eV Core-core repulsion = 28478.641987 eV Total energy + Delta-G solvation = -4028.304251 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.78311 -40.66554 -39.52362 -37.16037 -36.35598 -35.92620 -33.89067 -33.32081 -32.04656 -30.76629 -29.30601 -27.54375 -27.29595 -25.55248 -25.34610 -24.39954 -23.05185 -21.67816 -21.11496 -20.56237 -19.91886 -19.65512 -18.17464 -17.80240 -17.12586 -17.01066 -16.77226 -16.45103 -16.06259 -15.83648 -15.60204 -15.50716 -15.27921 -14.81167 -14.66677 -14.24809 -14.09197 -14.01159 -13.86362 -13.67115 -13.55532 -13.47821 -13.09227 -13.00039 -12.92265 -12.88890 -12.56106 -12.52441 -12.44891 -12.34476 -12.17404 -12.14523 -11.94973 -11.86833 -11.68479 -11.63732 -11.53961 -11.44309 -11.23901 -10.39222 -10.33074 -10.01338 -9.74904 -9.31481 -8.47447 -5.95204 1.34458 1.38162 1.50635 1.89101 2.04692 2.18943 2.27413 2.91677 3.18747 3.30028 3.59450 3.61025 3.77499 3.86516 3.94774 4.16181 4.19286 4.22794 4.24248 4.27618 4.32621 4.37748 4.42763 4.48341 4.50749 4.51429 4.59283 4.62946 4.68425 4.80314 4.85535 4.87650 4.89416 4.95227 4.97597 4.99790 5.03234 5.09927 5.15186 5.26229 5.29140 5.33808 5.39096 5.41006 5.44128 5.47777 5.53077 5.79640 5.94054 6.17094 6.59190 6.60600 7.12903 7.48760 7.54815 8.12329 8.70070 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009687 B = 0.004076 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.663706 B = 6868.442477 C = 8853.599954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.096 4.096 4 C -0.104 4.104 5 H 0.102 0.898 6 C -0.097 4.097 7 C -0.149 4.149 8 C 0.518 3.482 9 O -0.562 6.562 10 N -0.617 5.617 11 C 0.068 3.932 12 C 0.136 3.864 13 C 0.008 3.992 14 H 0.096 0.904 15 C -0.114 4.114 16 C 0.002 3.998 17 N -0.448 5.448 18 C 0.030 3.970 19 C 0.448 3.552 20 O -0.616 6.616 21 N -0.572 5.572 22 C -0.328 4.328 23 H 0.072 0.928 24 C -0.008 4.008 25 N -0.918 5.918 26 Si 0.987 3.013 27 H -0.270 1.270 28 H -0.268 1.268 29 H -0.278 1.278 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.030 0.970 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.117 0.883 46 H 0.064 0.936 47 H 0.106 0.894 48 H 0.089 0.911 49 H 0.059 0.941 50 H 0.050 0.950 51 H 0.092 0.908 52 H 0.067 0.933 53 H 0.393 0.607 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.169 6.825 10.246 22.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.134 4.134 4 C -0.125 4.125 5 H 0.120 0.880 6 C -0.134 4.134 7 C -0.206 4.206 8 C 0.306 3.694 9 O -0.440 6.440 10 N -0.350 5.350 11 C -0.074 4.074 12 C 0.013 3.987 13 C -0.102 4.102 14 H 0.114 0.886 15 C -0.152 4.152 16 C -0.127 4.127 17 N -0.171 5.171 18 C -0.102 4.102 19 C 0.235 3.765 20 O -0.501 6.501 21 N -0.209 5.209 22 C -0.458 4.458 23 H 0.090 0.910 24 C -0.208 4.208 25 N -0.559 5.559 26 Si 0.811 3.189 27 H -0.196 1.196 28 H -0.193 1.193 29 H -0.203 1.203 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.108 0.892 45 H 0.135 0.865 46 H 0.082 0.918 47 H 0.125 0.875 48 H 0.107 0.893 49 H 0.077 0.923 50 H 0.069 0.931 51 H 0.110 0.890 52 H 0.085 0.915 53 H 0.227 0.773 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.095 7.188 8.495 22.101 hybrid contribution 1.629 -0.879 0.211 1.863 sum -17.466 6.309 8.706 20.510 Atomic orbital electron populations 1.21747 0.94865 1.02076 1.02013 1.21586 0.96543 0.95336 1.02684 1.21467 0.90594 0.98597 1.02766 1.21472 0.98360 0.92698 0.99975 0.88026 1.21379 0.94282 1.01029 0.96760 1.21776 0.97224 1.01369 1.00259 1.20813 0.76707 0.88913 0.82917 1.90691 1.50105 1.65136 1.38039 1.47816 1.61620 1.18524 1.07021 1.22108 1.00985 0.97476 0.86782 1.21469 0.89991 0.83975 1.03245 1.24065 0.96556 0.94443 0.95127 0.88632 1.23090 0.95660 0.95086 1.01408 1.23531 0.94606 0.94260 1.00317 1.68979 1.14068 0.98427 1.35643 1.22323 0.97162 0.94936 0.95758 1.20562 0.85191 0.82495 0.88213 1.90516 1.67308 1.62620 1.29668 1.41872 1.36585 1.19450 1.23024 1.19549 1.17127 1.04544 1.04556 0.90975 1.25920 1.00248 0.96205 0.98449 1.69654 1.44088 1.17332 1.24820 0.85025 0.78172 0.77716 0.78021 1.19584 1.19255 1.20269 0.92151 0.91899 0.93174 0.92215 0.90826 0.89927 0.92730 0.89464 0.92990 0.93284 0.93631 0.95050 0.90509 0.90970 0.89217 0.86470 0.91773 0.87523 0.89291 0.92304 0.93088 0.89033 0.91547 0.77311 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.12 -1.87 5.70 30.59 0.17 -1.70 16 3 C -0.10 -1.74 4.61 30.59 0.14 -1.60 16 4 C -0.10 -2.52 1.46 -11.54 -0.02 -2.53 16 5 H 0.10 2.18 6.23 -2.39 -0.01 2.17 16 6 C -0.10 -2.91 4.98 30.60 0.15 -2.76 16 7 C -0.15 -5.84 9.33 71.98 0.67 -5.17 16 8 C 0.52 15.12 4.95 87.66 0.43 15.55 16 9 O -0.56 -22.31 14.64 -3.04 -0.04 -22.35 16 10 N -0.62 -13.34 2.81 -846.75 -2.38 -15.72 16 11 C 0.07 0.86 9.71 127.77 1.24 2.10 16 12 C 0.14 2.82 5.61 86.38 0.48 3.30 16 13 C 0.01 0.20 3.37 42.19 0.14 0.34 16 14 H 0.10 1.86 7.63 -2.39 -0.02 1.84 16 15 C -0.11 -2.65 8.00 30.94 0.25 -2.40 16 16 C 0.00 0.07 6.32 83.58 0.53 0.60 16 17 N -0.45 -15.89 5.02 -906.68 -4.56 -20.45 16 18 C 0.03 1.13 4.75 85.56 0.41 1.54 16 19 C 0.45 22.46 6.61 87.66 0.58 23.04 16 20 O -0.62 -36.35 14.93 -3.06 -0.05 -36.39 16 21 N -0.57 -30.24 5.29 -306.98 -1.62 -31.87 16 22 C -0.33 -19.17 9.68 84.04 0.81 -18.35 16 23 H 0.07 4.57 7.16 -2.91 -0.02 4.55 16 24 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 25 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 26 Si 0.99 44.09 29.55 68.60 2.03 46.12 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 29 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 1.01 6.44 -2.39 -0.02 1.00 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 35 H 0.08 1.18 7.20 -2.39 -0.02 1.16 16 36 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 2.19 6.29 -2.39 -0.02 2.17 16 38 H 0.05 1.75 7.63 -2.39 -0.02 1.74 16 39 H 0.05 2.24 4.91 -2.39 -0.01 2.23 16 40 H 0.04 1.73 8.14 -2.38 -0.02 1.72 16 41 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 42 H 0.08 0.66 7.75 -2.39 -0.02 0.64 16 43 H 0.07 0.93 5.96 -2.39 -0.01 0.91 16 44 H 0.09 0.81 8.04 -2.38 -0.02 0.79 16 45 H 0.12 1.42 8.07 -2.38 -0.02 1.40 16 46 H 0.06 1.69 7.10 -2.39 -0.02 1.67 16 47 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.09 2.16 7.94 -2.38 -0.02 2.14 16 49 H 0.06 1.99 7.84 -2.39 -0.02 1.97 16 50 H 0.05 2.11 7.95 -2.39 -0.02 2.09 16 51 H 0.09 3.29 6.92 -2.39 -0.02 3.27 16 52 H 0.07 2.19 7.56 -2.38 -0.02 2.17 16 53 H 0.39 19.78 7.90 -92.71 -0.73 19.04 16 54 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -78.83 417.09 0.99 -77.84 By element: Atomic # 1 Polarization: 41.38 SS G_CDS: 0.15 Total: 41.53 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 7.18 Total: 10.80 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -8.28 Total: -117.55 kcal Atomic # 8 Polarization: -58.65 SS G_CDS: -0.09 Total: -58.74 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -78.83 0.99 -77.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691405520.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.261 kcal (2) G-P(sol) polarization free energy of solvation -78.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds