Wall clock time and date at job start Sat Apr 11 2020 05:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46979 * 2 1 4 4 C 1.52995 * 109.46979 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47342 * 54.99651 * 4 3 2 6 6 C 1.53005 * 109.47254 * 294.99493 * 4 3 2 7 7 C 1.50707 * 109.47004 * 174.99716 * 4 3 2 8 8 O 1.21276 * 119.99827 * 0.02562 * 7 4 3 9 9 N 1.34773 * 119.99796 * 179.97438 * 7 4 3 10 10 C 1.46499 * 120.00081 * 179.97438 * 9 7 4 11 11 H 1.09001 * 110.27669 * 327.09269 * 10 9 7 12 12 C 1.54594 * 110.30742 * 89.28677 * 10 9 7 13 13 C 1.54936 * 102.92267 * 96.96140 * 12 10 9 14 14 N 1.48537 * 103.22438 * 37.41655 * 13 12 10 15 15 C 1.46900 * 110.99666 * 200.27889 * 14 13 12 16 16 C 1.50699 * 109.47313 * 300.96641 * 15 14 13 17 17 O 1.21290 * 119.99806 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00127 * 179.97438 * 16 15 14 19 19 C 1.37097 * 120.00066 * 179.97438 * 18 16 15 20 20 H 1.07992 * 120.00254 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99963 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00143 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99940 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47082 * 60.00543 * 23 21 19 25 25 H 1.48500 * 109.47059 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47219 * 300.00328 * 23 21 19 27 27 C 1.47901 * 105.81998 * 320.78882 * 14 13 12 28 28 H 1.08995 * 110.08243 * 265.88893 * 27 14 13 29 29 C 1.53002 * 109.91419 * 144.68587 * 27 14 13 30 30 C 1.53000 * 109.47026 * 67.62020 * 29 27 14 31 31 H 1.08998 * 109.47385 * 300.00321 * 1 2 3 32 32 H 1.09001 * 109.47076 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47197 * 60.00556 * 1 2 3 34 34 H 1.08999 * 109.47197 * 119.99444 * 2 1 3 35 35 H 1.08998 * 109.47385 * 239.99679 * 2 1 3 36 36 H 1.08999 * 109.46702 * 299.99747 * 3 2 1 37 37 H 1.08998 * 109.47324 * 59.99642 * 3 2 1 38 38 H 1.09002 * 109.47075 * 300.00321 * 6 4 3 39 39 H 1.09002 * 109.46726 * 60.00445 * 6 4 3 40 40 H 1.08998 * 109.47098 * 180.02562 * 6 4 3 41 41 H 0.97003 * 120.00557 * 0.02562 * 9 7 4 42 42 H 1.08999 * 110.72530 * 215.31987 * 12 10 9 43 43 H 1.08995 * 110.72602 * 338.60277 * 12 10 9 44 44 H 1.08998 * 110.66847 * 278.97726 * 13 12 10 45 45 H 1.09007 * 110.81199 * 155.91285 * 13 12 10 46 46 H 1.09007 * 109.47087 * 60.97024 * 15 14 13 47 47 H 1.08999 * 109.47553 * 180.96226 * 15 14 13 48 48 H 0.97006 * 120.00066 * 0.02562 * 18 16 15 49 49 H 0.97003 * 120.00030 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.46818 * 187.61970 * 29 27 14 51 51 H 1.08998 * 109.47372 * 307.61790 * 29 27 14 52 52 H 1.09000 * 109.46908 * 292.75039 * 30 29 27 53 53 H 1.08994 * 109.47088 * 52.75545 * 30 29 27 54 54 H 1.08999 * 109.46965 * 172.75738 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9336 0.8529 -0.8409 6 6 4.0794 0.8332 1.3084 7 6 4.0723 2.8580 -0.1233 8 8 3.2842 3.7762 -0.2036 9 7 5.3973 3.1033 -0.1437 10 6 5.8857 4.4792 -0.2647 11 1 5.2029 5.0701 -0.8752 12 6 6.0463 5.1166 1.1346 13 6 7.5534 4.9187 1.4346 14 7 8.1940 5.1314 0.1115 15 6 9.5341 4.5309 0.0729 16 6 10.3907 5.1444 1.1503 17 8 9.9300 5.9975 1.8790 18 7 11.6684 4.7443 1.3049 19 6 12.4478 5.3027 2.2848 20 1 12.0379 6.0629 2.9331 21 6 13.7649 4.8898 2.4445 22 7 14.2636 3.9644 1.6560 23 14 14.8267 5.6502 3.7801 24 1 14.2087 5.3989 5.1068 25 1 16.1812 5.0427 3.7415 26 1 14.9345 7.1138 3.5534 27 6 7.2985 4.4930 -0.8774 28 1 7.6270 3.4729 -1.0761 29 6 7.2954 5.3017 -2.1762 30 6 8.6690 5.2013 -2.8427 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 1.6766 1.9563 -0.8900 37 1 1.6765 1.9564 0.8899 38 1 3.7156 1.4228 2.1499 39 1 3.7160 -0.1906 1.3979 40 1 5.1694 0.8336 1.3090 41 1 6.0277 2.3689 -0.0790 42 1 5.7944 6.1767 1.1067 43 1 5.4348 4.5930 1.8694 44 1 7.7442 3.9085 1.7965 45 1 7.9050 5.6571 2.1553 46 1 9.4557 3.4564 0.2387 47 1 9.9873 4.7160 -0.9010 48 1 12.0367 4.0616 0.7224 49 1 15.1832 3.6764 1.7673 50 1 6.5351 4.9053 -2.8492 51 1 7.0750 6.3457 -1.9537 52 1 9.4095 5.7123 -2.2275 53 1 8.9457 4.1523 -2.9484 54 1 8.6301 5.6678 -3.8271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691964525.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:33 Heat of formation + Delta-G solvation = -113.446912 kcal Electronic energy + Delta-G solvation = -30523.762790 eV Core-core repulsion = 26493.599766 eV Total energy + Delta-G solvation = -4030.163024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55628 -40.50941 -39.31249 -36.90239 -36.03106 -35.39931 -34.11853 -33.34780 -33.06000 -31.81105 -28.78384 -28.11118 -27.49514 -26.13254 -24.93065 -23.66052 -22.62791 -21.58972 -21.53922 -20.99102 -20.43213 -19.85671 -18.07903 -17.72715 -17.46306 -16.64461 -16.58715 -16.47264 -16.36894 -15.97211 -15.66611 -15.41824 -15.34290 -14.84266 -14.71825 -14.31336 -14.20473 -13.94870 -13.84571 -13.63378 -13.45607 -13.43611 -13.32827 -13.15290 -12.93936 -12.74557 -12.53276 -12.44212 -12.38425 -12.31980 -12.13367 -12.12096 -11.93655 -11.85442 -11.79721 -11.69205 -11.57294 -11.42068 -11.39203 -10.71149 -10.24564 -10.06292 -9.99184 -9.32353 -8.45768 -5.93888 1.39456 1.41680 1.52026 1.63758 2.06163 2.10607 2.29469 2.83461 3.21096 3.30282 3.46375 3.69119 3.74586 3.82057 3.98046 4.02215 4.11033 4.24271 4.30030 4.31939 4.36443 4.38450 4.40601 4.42260 4.47281 4.55837 4.61360 4.71247 4.73477 4.80916 4.88306 4.91462 4.94361 5.00160 5.04540 5.06029 5.13685 5.14104 5.20956 5.24206 5.31377 5.34267 5.41758 5.44588 5.46421 5.50514 5.53249 5.86747 5.97541 6.13171 6.52853 6.61874 7.14224 7.24727 7.57333 8.13614 8.71287 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.002190 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.063993 B =12782.974424 C =13531.553042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.098 4.098 4 C -0.104 4.104 5 H 0.121 0.879 6 C -0.144 4.144 7 C 0.515 3.485 8 O -0.582 6.582 9 N -0.712 5.712 10 C 0.146 3.854 11 H 0.092 0.908 12 C -0.123 4.123 13 C 0.045 3.955 14 N -0.500 5.500 15 C 0.046 3.954 16 C 0.440 3.560 17 O -0.614 6.614 18 N -0.573 5.573 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.274 1.274 27 C 0.065 3.935 28 H 0.077 0.923 29 C -0.102 4.102 30 C -0.153 4.153 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.411 0.589 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.037 0.963 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.114 0.886 48 H 0.396 0.604 49 H 0.277 0.723 50 H 0.080 0.920 51 H 0.060 0.940 52 H 0.044 0.956 53 H 0.062 0.938 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.049 -12.013 -8.473 24.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.136 4.136 4 C -0.125 4.125 5 H 0.139 0.861 6 C -0.201 4.201 7 C 0.303 3.697 8 O -0.461 6.461 9 N -0.364 5.364 10 C 0.040 3.960 11 H 0.110 0.890 12 C -0.162 4.162 13 C -0.082 4.082 14 N -0.225 5.225 15 C -0.085 4.085 16 C 0.228 3.772 17 O -0.501 6.501 18 N -0.210 5.210 19 C -0.461 4.461 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.199 1.199 27 C -0.044 4.044 28 H 0.094 0.906 29 C -0.140 4.140 30 C -0.210 4.210 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.248 0.752 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.056 0.944 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.131 0.869 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.099 0.901 51 H 0.078 0.922 52 H 0.063 0.937 53 H 0.081 0.919 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.631 -10.334 -8.175 24.480 hybrid contribution 1.248 -0.702 0.771 1.627 sum -19.383 -11.036 -7.404 23.501 Atomic orbital electron populations 1.21782 0.95870 1.02029 1.01560 1.21579 0.95963 0.95235 1.03052 1.21387 0.92568 0.97698 1.01940 1.21387 0.97517 0.91426 1.02177 0.86104 1.21849 1.01703 1.02093 0.94498 1.21309 0.81834 0.92319 0.74243 1.90685 1.56291 1.48045 1.51099 1.46110 1.07306 1.08662 1.74306 1.21650 0.94774 0.83428 0.96109 0.89032 1.22819 0.95023 1.01470 0.96903 1.23171 0.93244 0.99642 0.92185 1.64475 1.00276 1.53388 1.04356 1.22128 0.90414 0.97055 0.98934 1.20731 0.83027 0.85728 0.87759 1.90469 1.73395 1.36412 1.49775 1.41898 1.10156 1.37308 1.31664 1.19593 0.93866 1.20872 1.11797 0.90416 1.25988 0.97898 0.96885 1.00394 1.69657 1.16809 1.30122 1.39403 0.85029 0.77226 0.78303 0.78023 1.19777 1.19485 1.19910 1.22785 0.90440 0.97934 0.93256 0.90552 1.21471 0.98316 1.00261 0.93923 1.21848 0.96725 1.02034 1.00368 0.93241 0.91747 0.93128 0.90746 0.90901 0.92721 0.93066 0.93385 0.89269 0.91331 0.75230 0.90891 0.90891 0.94433 0.91103 0.91259 0.86851 0.77043 0.91333 0.90124 0.92166 0.93734 0.91882 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.91 71.98 0.71 -0.96 16 2 C -0.12 -1.25 5.69 30.59 0.17 -1.07 16 3 C -0.10 -1.48 4.03 30.59 0.12 -1.36 16 4 C -0.10 -1.39 2.72 -11.54 -0.03 -1.42 16 5 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 6 C -0.14 -1.57 8.85 71.98 0.64 -0.94 16 7 C 0.51 10.64 7.15 87.66 0.63 11.26 16 8 O -0.58 -17.15 15.57 -3.02 -0.05 -17.20 16 9 N -0.71 -12.93 4.95 -438.38 -2.17 -15.10 16 10 C 0.15 3.34 2.98 45.87 0.14 3.48 16 11 H 0.09 2.31 7.10 -2.39 -0.02 2.30 16 12 C -0.12 -3.35 6.78 31.80 0.22 -3.13 16 13 C 0.05 1.47 5.55 86.65 0.48 1.96 16 14 N -0.50 -15.59 4.67 -862.60 -4.03 -19.62 16 15 C 0.05 1.53 4.99 85.56 0.43 1.95 16 16 C 0.44 20.53 7.51 87.66 0.66 21.18 16 17 O -0.61 -33.32 13.57 -3.06 -0.04 -33.36 16 18 N -0.57 -28.89 5.29 -306.99 -1.62 -30.51 16 19 C -0.33 -18.64 9.68 84.04 0.81 -17.82 16 20 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 22 N -0.92 -48.90 13.05 21.66 0.28 -48.62 16 23 Si 0.99 42.70 29.55 68.60 2.03 44.73 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 27 C 0.06 1.46 2.37 45.06 0.11 1.57 16 28 H 0.08 1.45 7.17 -2.39 -0.02 1.43 16 29 C -0.10 -2.13 5.38 30.59 0.16 -1.96 16 30 C -0.15 -3.15 8.76 71.98 0.63 -2.52 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.64 6.56 -2.39 -0.02 0.62 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.05 1.00 7.96 -2.39 -0.02 0.98 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.09 0.67 6.56 -2.39 -0.02 0.65 16 40 H 0.07 0.65 7.56 -2.39 -0.02 0.63 16 41 H 0.41 5.44 7.75 -92.71 -0.72 4.72 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.07 1.94 8.05 -2.39 -0.02 1.92 16 44 H 0.04 1.18 8.01 -2.39 -0.02 1.16 16 45 H 0.07 2.93 6.25 -2.38 -0.01 2.92 16 46 H 0.07 2.00 7.99 -2.38 -0.02 1.98 16 47 H 0.11 3.42 5.35 -2.39 -0.01 3.41 16 48 H 0.40 18.90 7.90 -92.70 -0.73 18.17 16 49 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 50 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.04 1.14 6.25 -2.39 -0.01 1.12 16 53 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 54 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -70.25 419.45 0.18 -70.07 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: -0.56 Total: 39.56 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 6.34 Total: 10.05 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -7.54 Total: -113.85 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -0.09 Total: -50.56 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -70.25 0.18 -70.07 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691964525.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.376 kcal (2) G-P(sol) polarization free energy of solvation -70.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds