Wall clock time and date at job start Sat Apr 11 2020 05:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46969 * 2 1 4 4 C 1.52995 * 109.47233 * 120.00186 * 2 1 3 5 5 H 1.09003 * 109.47506 * 57.10267 * 4 2 1 6 6 C 1.53000 * 109.47229 * 297.09955 * 4 2 1 7 7 N 1.46497 * 109.47191 * 184.99730 * 6 4 2 8 8 C 1.34778 * 120.00186 * 179.97438 * 7 6 4 9 9 O 1.21287 * 119.99608 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.00318 * 180.02562 * 8 7 6 11 11 C 1.53782 * 113.61560 * 197.54317 * 10 8 7 12 12 C 1.53783 * 87.08197 * 89.19937 * 11 10 8 13 13 C 1.52995 * 113.61393 * 139.98163 * 12 11 10 14 14 C 1.53000 * 113.61412 * 270.80082 * 12 11 10 15 15 C 1.53782 * 87.17055 * 25.38870 * 12 11 10 16 16 N 1.46906 * 109.47195 * 177.10193 * 4 2 1 17 17 C 1.46897 * 110.99843 * 273.90751 * 16 4 2 18 18 C 1.50694 * 109.47247 * 182.75446 * 17 16 4 19 19 O 1.21296 * 120.00102 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00164 * 179.97438 * 18 17 16 21 21 C 1.37097 * 119.99874 * 180.02562 * 20 18 17 22 22 H 1.08007 * 120.00000 * 0.02562 * 21 20 18 23 23 C 1.38953 * 120.00036 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00024 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 119.99799 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47269 * 90.00116 * 25 23 21 27 27 H 1.48506 * 109.47346 * 209.99960 * 25 23 21 28 28 H 1.48499 * 109.47293 * 330.00155 * 25 23 21 29 29 H 1.08999 * 109.47021 * 305.85187 * 1 2 3 30 30 H 1.09002 * 109.46828 * 65.85526 * 1 2 3 31 31 H 1.09000 * 109.46887 * 185.85591 * 1 2 3 32 32 H 1.09003 * 109.46977 * 240.00252 * 2 1 3 33 33 H 1.09011 * 109.47006 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47371 * 299.99805 * 3 2 1 35 35 H 1.09003 * 109.47065 * 60.00306 * 3 2 1 36 36 H 1.09006 * 109.46987 * 65.00283 * 6 4 2 37 37 H 1.08991 * 109.47227 * 305.00287 * 6 4 2 38 38 H 0.97000 * 120.00054 * 0.02562 * 7 6 4 39 39 H 1.08997 * 112.85051 * 66.34895 * 10 8 7 40 40 H 1.09001 * 113.61344 * 334.65720 * 11 10 8 41 41 H 1.08992 * 113.61630 * 203.75094 * 11 10 8 42 42 H 1.09002 * 109.46802 * 181.53098 * 13 12 11 43 43 H 1.09004 * 109.47233 * 301.52813 * 13 12 11 44 44 H 1.08995 * 109.47318 * 61.52913 * 13 12 11 45 45 H 1.08998 * 109.47181 * 296.36371 * 14 12 11 46 46 H 1.09006 * 109.47145 * 56.36396 * 14 12 11 47 47 H 1.09001 * 109.46921 * 176.36029 * 14 12 11 48 48 H 1.09003 * 113.61414 * 89.15914 * 15 12 11 49 49 H 1.08996 * 113.61431 * 220.05869 * 15 12 11 50 50 H 1.00895 * 110.99799 * 149.95504 * 16 4 2 51 51 H 1.09004 * 109.46961 * 302.75676 * 17 16 4 52 52 H 1.08998 * 109.47467 * 62.75308 * 17 16 4 53 53 H 0.96993 * 120.00138 * 359.97438 * 20 18 17 54 54 H 0.96997 * 120.00060 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6350 -1.7329 1.2756 6 6 1.5905 0.0408 2.4974 7 7 2.1775 -0.5809 3.6869 8 6 1.9188 -0.0749 4.9090 9 8 1.1998 0.8951 5.0239 10 6 2.5231 -0.7141 6.1327 11 6 1.8232 -0.3185 7.4436 12 6 0.8890 -1.5186 7.2152 13 6 0.5602 -2.2914 8.4939 14 6 -0.3538 -1.1794 6.3897 15 6 2.0239 -2.1476 6.3897 16 7 3.5074 -0.7822 1.2147 17 6 3.9680 -1.9536 0.4573 18 6 5.4728 -2.0200 0.5007 19 8 6.1001 -1.1749 1.1037 20 7 6.1218 -3.0190 -0.1296 21 6 7.4908 -3.0796 -0.0897 22 1 8.0493 -2.3271 0.4473 23 6 8.1600 -4.1093 -0.7400 24 7 9.4722 -4.1677 -0.7012 25 14 7.1941 -5.4112 -1.6680 26 1 7.0060 -4.9782 -3.0760 27 1 7.9403 -6.6948 -1.6404 28 1 5.8680 -5.5956 -1.0256 29 1 -0.3633 0.6019 0.8330 30 1 -0.3633 0.4204 -0.9378 31 1 -0.3633 -1.0223 0.1049 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.5034 0.0098 2.5702 37 1 1.9206 1.0773 2.4288 38 1 2.7529 -1.3564 3.5950 39 1 3.6079 -0.6152 6.1699 40 1 1.3160 0.6451 7.3943 41 1 2.4567 -0.4199 8.3247 42 1 -0.0807 -3.1392 8.2514 43 1 1.4832 -2.6519 8.9482 44 1 0.0438 -1.6339 9.1932 45 1 -0.9646 -0.4579 6.9324 46 1 -0.0498 -0.7522 5.4341 47 1 -0.9323 -2.0865 6.2146 48 1 2.7125 -2.7500 6.9822 49 1 1.6787 -2.6584 5.4910 50 1 3.8914 -0.7811 2.1477 51 1 3.5514 -2.8587 0.8992 52 1 3.6377 -1.8697 -0.5781 53 1 5.6202 -3.6954 -0.6109 54 1 9.9393 -4.8862 -1.1555 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698965188.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:46 Heat of formation + Delta-G solvation = -84.580976 kcal Electronic energy + Delta-G solvation = -30756.738505 eV Core-core repulsion = 26727.827202 eV Total energy + Delta-G solvation = -4028.911303 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.96177 -40.48931 -39.53950 -38.45132 -36.04709 -35.26401 -34.49734 -33.71170 -31.97177 -29.86497 -28.34701 -28.06347 -27.75720 -26.63256 -25.78903 -24.80228 -23.76939 -21.46221 -21.25295 -20.31557 -20.09486 -19.24454 -18.13632 -17.78381 -17.28517 -17.03354 -16.84845 -16.57273 -16.14037 -15.82449 -15.52984 -15.12571 -15.00782 -14.95905 -14.87584 -14.70961 -14.34911 -14.19154 -14.04367 -13.84219 -13.58108 -13.47466 -13.42399 -13.10783 -12.93758 -12.76839 -12.72622 -12.60209 -12.49404 -12.39867 -12.12045 -11.97452 -11.85496 -11.74752 -11.73068 -11.50273 -11.31721 -11.05942 -10.96807 -10.79963 -10.41791 -10.23836 -10.10950 -9.33786 -8.40256 -6.01153 1.30808 1.36910 1.45493 1.58993 1.96721 2.11238 2.24034 2.69735 3.16396 3.33357 3.45377 3.58315 3.60837 3.65535 3.76559 4.01723 4.09867 4.14767 4.16541 4.31701 4.38808 4.39426 4.45695 4.55199 4.57217 4.65329 4.71480 4.72918 4.76811 4.85806 4.87696 4.88257 4.94287 4.95922 5.00797 5.11868 5.15866 5.16452 5.20380 5.24232 5.28548 5.38283 5.46832 5.51555 5.53467 5.56831 5.58481 5.91109 6.03941 6.33900 6.42338 6.60556 6.89464 7.17946 7.41095 7.97655 8.77418 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010141 B = 0.002808 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.438214 B = 9968.498176 C =11671.983996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.141 4.141 4 C 0.088 3.912 5 H 0.073 0.927 6 C 0.119 3.881 7 N -0.724 5.724 8 C 0.537 3.463 9 O -0.572 6.572 10 C -0.150 4.150 11 C -0.114 4.114 12 C -0.089 4.089 13 C -0.132 4.132 14 C -0.134 4.134 15 C -0.111 4.111 16 N -0.678 5.678 17 C 0.061 3.939 18 C 0.449 3.551 19 O -0.614 6.614 20 N -0.590 5.590 21 C -0.327 4.327 22 H 0.055 0.945 23 C -0.016 4.016 24 N -0.936 5.936 25 Si 0.964 3.036 26 H -0.259 1.259 27 H -0.277 1.277 28 H -0.228 1.228 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.405 0.595 39 H 0.113 0.887 40 H 0.060 0.940 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.063 0.937 48 H 0.109 0.891 49 H 0.073 0.927 50 H 0.343 0.657 51 H 0.082 0.918 52 H 0.113 0.887 53 H 0.390 0.610 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.812 -0.446 9.613 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 C -0.198 4.198 4 C -0.021 4.021 5 H 0.090 0.910 6 C -0.004 4.004 7 N -0.376 5.376 8 C 0.325 3.675 9 O -0.452 6.452 10 C -0.171 4.171 11 C -0.151 4.151 12 C -0.089 4.089 13 C -0.189 4.189 14 C -0.192 4.192 15 C -0.148 4.148 16 N -0.313 5.313 17 C -0.071 4.071 18 C 0.237 3.763 19 O -0.498 6.498 20 N -0.232 5.232 21 C -0.456 4.456 22 H 0.073 0.927 23 C -0.214 4.214 24 N -0.576 5.576 25 Si 0.784 3.216 26 H -0.184 1.184 27 H -0.202 1.202 28 H -0.151 1.151 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.241 0.759 39 H 0.131 0.869 40 H 0.079 0.921 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.082 0.918 48 H 0.127 0.873 49 H 0.092 0.908 50 H 0.164 0.836 51 H 0.100 0.900 52 H 0.131 0.869 53 H 0.225 0.775 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.662 1.146 9.508 26.456 hybrid contribution 0.683 -1.348 -0.117 1.516 sum -23.979 -0.202 9.391 25.754 Atomic orbital electron populations 1.21875 0.93640 1.02443 1.02371 1.21047 0.95883 0.96289 0.96704 1.21767 1.01079 0.95901 1.01082 1.21885 0.86586 0.99090 0.94540 0.90971 1.21660 0.98594 0.97442 0.82745 1.46025 1.51593 1.33926 1.06070 1.20352 0.79492 0.82916 0.84760 1.90673 1.39165 1.28388 1.86971 1.22498 1.01830 0.99386 0.93380 1.22978 0.97919 0.98633 0.95608 1.21841 0.94188 0.96156 0.96691 1.21699 1.02115 0.99574 0.95502 1.21724 0.96664 1.01124 0.99642 1.23127 0.97649 0.93215 1.00816 1.60068 1.07874 1.41807 1.21556 1.21730 0.89582 0.93670 1.02140 1.20963 0.91106 0.82185 0.82059 1.90561 1.70090 1.41738 1.47428 1.42018 1.05945 1.25984 1.49212 1.18994 0.81791 1.11786 1.33065 0.92720 1.26117 0.96645 1.00341 0.98300 1.69806 1.09028 1.34517 1.44273 0.85373 0.79627 0.77328 0.79238 1.18386 1.20195 1.15096 0.92643 0.91759 0.91599 0.90625 0.93624 0.92554 0.93148 0.89984 0.91845 0.75871 0.86920 0.92071 0.87704 0.92152 0.91483 0.92502 0.93026 0.93211 0.91833 0.87264 0.90838 0.83581 0.89982 0.86895 0.77465 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.75 71.98 0.63 -1.37 16 2 C -0.08 -1.43 2.84 -10.80 -0.03 -1.46 16 3 C -0.14 -3.05 8.64 71.98 0.62 -2.43 16 4 C 0.09 1.67 1.99 44.91 0.09 1.76 16 5 H 0.07 1.10 7.74 -2.39 -0.02 1.08 16 6 C 0.12 2.43 4.61 86.38 0.40 2.83 16 7 N -0.72 -14.68 4.98 -463.06 -2.31 -16.99 16 8 C 0.54 12.55 5.23 87.66 0.46 13.01 16 9 O -0.57 -17.25 14.56 -3.05 -0.04 -17.30 16 10 C -0.15 -2.75 4.34 -10.96 -0.05 -2.80 16 11 C -0.11 -2.00 6.75 31.12 0.21 -1.79 16 12 C -0.09 -1.37 1.39 -51.66 -0.07 -1.44 16 13 C -0.13 -1.58 9.18 71.98 0.66 -0.92 16 14 C -0.13 -2.43 8.79 71.98 0.63 -1.80 16 15 C -0.11 -1.57 6.87 31.18 0.21 -1.35 16 16 N -0.68 -17.87 5.34 -495.58 -2.64 -20.51 16 17 C 0.06 1.66 5.99 85.56 0.51 2.17 16 18 C 0.45 19.10 7.81 87.66 0.68 19.78 16 19 O -0.61 -32.70 15.72 -3.08 -0.05 -32.75 16 20 N -0.59 -26.55 5.09 -306.98 -1.56 -28.11 16 21 C -0.33 -18.70 10.16 84.04 0.85 -17.84 16 22 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 23 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 24 N -0.94 -55.72 13.96 21.66 0.30 -55.41 16 25 Si 0.96 37.59 27.74 68.60 1.90 39.49 16 26 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 27 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 28 H -0.23 -7.27 6.52 99.48 0.65 -6.62 16 29 H 0.05 0.79 6.93 -2.39 -0.02 0.77 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 1.39 7.51 -2.39 -0.02 1.37 16 33 H 0.04 1.25 7.69 -2.38 -0.02 1.23 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 1.08 6.26 -2.39 -0.01 1.07 16 36 H 0.08 1.58 6.90 -2.38 -0.02 1.56 16 37 H 0.06 1.58 6.10 -2.39 -0.01 1.57 16 38 H 0.41 7.23 7.39 -92.71 -0.69 6.55 16 39 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.06 1.36 7.30 -2.39 -0.02 1.34 16 41 H 0.10 1.45 8.10 -2.39 -0.02 1.43 16 42 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.68 7.98 -2.39 -0.02 0.66 16 44 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.05 1.09 4.51 -2.38 -0.01 1.08 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.11 1.23 7.99 -2.39 -0.02 1.21 16 49 H 0.07 1.01 8.05 -2.39 -0.02 1.00 16 50 H 0.34 9.87 6.31 -89.70 -0.57 9.31 16 51 H 0.08 1.70 7.99 -2.38 -0.02 1.68 16 52 H 0.11 2.63 7.52 -2.39 -0.02 2.61 16 53 H 0.39 14.34 5.76 -92.71 -0.53 13.81 16 54 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -77.03 415.81 0.95 -76.08 By element: Atomic # 1 Polarization: 50.45 SS G_CDS: -0.93 Total: 49.52 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 6.28 Total: 5.98 kcal Atomic # 7 Polarization: -114.82 SS G_CDS: -6.21 Total: -121.03 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -0.09 Total: -50.04 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 1.90 Total: 39.49 kcal Total: -77.03 0.95 -76.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698965188.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.505 kcal (2) G-P(sol) polarization free energy of solvation -77.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds