Wall clock time and date at job start Sat Apr 11 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46872 * 2 1 4 4 C 1.52996 * 109.46872 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47827 * 305.00292 * 4 3 2 6 6 C 1.53001 * 109.47297 * 185.00296 * 4 3 2 7 7 N 1.46497 * 109.47401 * 65.00526 * 4 3 2 8 8 C 1.46765 * 124.35299 * 240.00356 * 7 4 3 9 9 C 1.54479 * 105.47730 * 163.00148 * 8 7 4 10 10 H 1.09006 * 110.96674 * 267.25807 * 9 8 7 11 11 C 1.50697 * 110.96908 * 143.53379 * 9 8 7 12 12 O 1.21280 * 120.00003 * 331.71322 * 11 9 8 13 13 N 1.34778 * 119.99705 * 151.71774 * 11 9 8 14 14 C 1.46503 * 120.00209 * 5.10080 * 13 11 9 15 15 C 1.46504 * 119.99715 * 185.09455 * 13 11 9 16 16 C 1.52998 * 109.47478 * 270.00132 * 15 13 11 17 17 C 1.52999 * 109.47060 * 180.02562 * 16 15 13 18 18 N 1.46507 * 109.46962 * 180.02562 * 17 16 15 19 19 C 1.36933 * 120.00103 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00101 * 359.97438 * 19 18 17 21 21 C 1.38805 * 120.00065 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00451 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00284 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47130 * 89.99494 * 23 21 19 25 25 H 1.48499 * 109.47418 * 210.00278 * 23 21 19 26 26 H 1.48508 * 109.46831 * 330.00086 * 23 21 19 27 27 C 1.54631 * 101.76470 * 25.41048 * 9 8 7 28 28 C 1.34420 * 124.34810 * 60.01491 * 7 4 3 29 29 O 1.21276 * 124.94145 * 0.40009 * 28 7 4 30 30 H 1.09001 * 109.47316 * 59.99711 * 1 2 3 31 31 H 1.09004 * 109.46949 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47084 * 299.99651 * 1 2 3 33 33 H 1.09009 * 109.47033 * 240.00583 * 2 1 3 34 34 H 1.08994 * 109.47560 * 120.00598 * 2 1 3 35 35 H 1.09005 * 109.46739 * 60.00965 * 3 2 1 36 36 H 1.08994 * 109.47516 * 300.00625 * 3 2 1 37 37 H 1.08998 * 109.47183 * 300.00196 * 6 4 3 38 38 H 1.09004 * 109.46827 * 60.00007 * 6 4 3 39 39 H 1.09001 * 109.47646 * 179.97438 * 6 4 3 40 40 H 1.08997 * 110.24504 * 43.99421 * 8 7 4 41 41 H 1.09003 * 110.31446 * 282.03741 * 8 7 4 42 42 H 1.09000 * 109.46530 * 298.49282 * 14 13 11 43 43 H 1.08998 * 109.46924 * 178.50298 * 14 13 11 44 44 H 1.08997 * 109.46972 * 58.49554 * 14 13 11 45 45 H 1.08995 * 109.47015 * 30.00466 * 15 13 11 46 46 H 1.09000 * 109.46775 * 150.00050 * 15 13 11 47 47 H 1.09005 * 109.46795 * 300.00325 * 16 15 13 48 48 H 1.09003 * 109.47193 * 59.99641 * 16 15 13 49 49 H 1.08999 * 109.46943 * 299.99520 * 17 16 15 50 50 H 1.09000 * 109.47261 * 59.99876 * 17 16 15 51 51 H 0.97004 * 119.99850 * 359.97438 * 18 17 16 52 52 H 0.96997 * 120.00715 * 180.02562 * 22 21 19 53 53 H 1.08999 * 110.48073 * 93.88148 * 27 9 8 54 54 H 1.08991 * 110.48627 * 216.52430 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0800 2.8796 0.1251 7 7 4.0577 0.8592 -1.2528 8 6 4.9049 -0.3365 -1.3345 9 6 4.8001 -0.8166 -2.7991 10 1 4.0071 -1.5561 -2.9113 11 6 6.1178 -1.3653 -3.2824 12 8 7.1560 -0.9538 -2.8096 13 7 6.1424 -2.3132 -4.2402 14 6 4.8975 -2.7301 -4.8904 15 6 7.4141 -2.9266 -4.6311 16 6 8.0399 -2.1208 -5.7713 17 6 9.3677 -2.7619 -6.1799 18 7 9.9672 -1.9900 -7.2713 19 6 11.1676 -2.3768 -7.8046 20 1 11.6727 -3.2507 -7.4204 21 6 11.7353 -1.6457 -8.8390 22 7 11.1196 -0.5810 -9.3076 23 14 13.3726 -2.1738 -9.5670 24 1 13.1340 -3.1120 -10.6931 25 1 14.1017 -0.9793 -10.0638 26 1 14.1836 -2.8499 -8.5228 27 6 4.4429 0.4950 -3.5361 28 6 3.7872 1.3503 -2.4744 29 8 3.1153 2.3359 -2.6936 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6765 1.9565 -0.8899 37 1 3.7163 3.4692 -0.7164 38 1 3.7170 3.3137 1.0568 39 1 5.1700 2.8796 0.1252 40 1 4.5361 -1.1070 -0.6576 41 1 5.9378 -0.0857 -1.0929 42 1 4.2233 -3.1541 -4.1463 43 1 5.1180 -3.4800 -5.6501 44 1 4.4253 -1.8664 -5.3585 45 1 8.0914 -2.9342 -3.7772 46 1 7.2371 -3.9494 -4.9635 47 1 7.3624 -2.1132 -6.6252 48 1 8.2169 -1.0979 -5.4389 49 1 10.0452 -2.7698 -5.3261 50 1 9.1902 -3.7846 -6.5125 51 1 9.5137 -1.2048 -7.6161 52 1 11.5161 -0.0703 -10.0307 53 1 5.3443 0.9786 -3.9125 54 1 3.7463 0.2973 -4.3507 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699551977.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:56 Heat of formation + Delta-G solvation = -94.129970 kcal Electronic energy + Delta-G solvation = -30141.100236 eV Core-core repulsion = 26111.774857 eV Total energy + Delta-G solvation = -4029.325378 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.07498 -40.61501 -37.75920 -37.52729 -36.62235 -36.39953 -34.18068 -33.69275 -31.80339 -30.77411 -28.83366 -27.91220 -27.60101 -26.91894 -25.10152 -23.61131 -23.33686 -22.44286 -22.21230 -20.04694 -19.93116 -19.15574 -18.66214 -17.79960 -17.29878 -16.84772 -16.64013 -16.30812 -16.18623 -15.83766 -15.66914 -15.31184 -15.12723 -14.98543 -14.75047 -14.59685 -14.53385 -14.31228 -13.90182 -13.77666 -13.56296 -13.55278 -13.37785 -13.06590 -13.04599 -12.85955 -12.77568 -12.70199 -12.67500 -12.43875 -12.37742 -12.31652 -12.06215 -11.89794 -11.82245 -11.76617 -11.61832 -11.54497 -10.99844 -10.95092 -10.60099 -9.71631 -9.64901 -9.03324 -7.97176 -5.27175 1.41585 1.46023 1.48765 1.55239 1.57292 1.83914 2.10318 2.55133 3.13675 3.36303 3.39484 3.57320 3.72450 3.87353 3.89923 3.99532 4.03510 4.10621 4.13938 4.26586 4.32792 4.40997 4.41851 4.51035 4.54509 4.56190 4.59591 4.62545 4.69121 4.72445 4.74798 4.76610 4.79184 4.87669 4.91411 4.93965 5.00363 5.03892 5.04646 5.22574 5.27355 5.31057 5.31827 5.32848 5.46407 5.47354 5.56578 5.68368 6.09502 6.24843 6.38356 7.11220 7.13482 7.30296 8.06351 8.29021 9.26620 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.001896 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.385262 B =14765.018099 C =15266.261684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.131 4.131 4 C 0.151 3.849 5 H 0.115 0.885 6 C -0.167 4.167 7 N -0.605 5.605 8 C 0.116 3.884 9 C -0.107 4.107 10 H 0.150 0.850 11 C 0.519 3.481 12 O -0.576 6.576 13 N -0.609 5.609 14 C 0.066 3.934 15 C 0.128 3.872 16 C -0.123 4.123 17 C 0.154 3.846 18 N -0.750 5.750 19 C -0.249 4.249 20 H 0.079 0.921 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.979 3.021 24 H -0.283 1.283 25 H -0.296 1.296 26 H -0.269 1.269 27 C -0.139 4.139 28 C 0.517 3.483 29 O -0.566 6.566 30 H 0.040 0.960 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.042 0.958 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.110 0.890 47 H 0.066 0.934 48 H 0.035 0.965 49 H 0.014 0.986 50 H 0.035 0.965 51 H 0.371 0.629 52 H 0.252 0.748 53 H 0.089 0.911 54 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.091 -4.852 22.599 34.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.169 4.169 4 C 0.050 3.950 5 H 0.133 0.867 6 C -0.225 4.225 7 N -0.338 5.338 8 C -0.007 4.007 9 C -0.128 4.128 10 H 0.168 0.832 11 C 0.307 3.693 12 O -0.455 6.455 13 N -0.340 5.340 14 C -0.076 4.076 15 C 0.004 3.996 16 C -0.162 4.162 17 C 0.027 3.973 18 N -0.392 5.392 19 C -0.380 4.380 20 H 0.096 0.904 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.807 3.193 24 H -0.209 1.209 25 H -0.222 1.222 26 H -0.194 1.194 27 C -0.180 4.180 28 C 0.306 3.694 29 O -0.445 6.445 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.070 0.930 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.128 0.872 47 H 0.085 0.915 48 H 0.054 0.946 49 H 0.032 0.968 50 H 0.053 0.947 51 H 0.203 0.797 52 H 0.060 0.940 53 H 0.107 0.893 54 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -24.786 -4.249 22.824 33.961 hybrid contribution 1.146 0.704 -1.068 1.718 sum -23.640 -3.545 21.756 32.323 Atomic orbital electron populations 1.21751 0.95728 1.01945 1.01444 1.21471 0.95973 0.95683 1.02339 1.21987 0.93805 0.98349 1.02766 1.21217 0.94354 0.94423 0.85016 0.86731 1.22162 1.00995 0.96514 1.02830 1.48468 1.50139 1.29052 1.06145 1.22114 0.95706 0.87306 0.95577 1.22233 0.96315 0.98369 0.95921 0.83197 1.20596 0.90815 0.78722 0.79149 1.90740 1.36266 1.59388 1.59141 1.47962 1.09369 1.39022 1.37653 1.22192 0.84515 1.01824 0.99051 1.21376 0.84823 0.96816 0.96552 1.21879 0.96322 0.99133 0.98846 1.20730 0.92611 0.94542 0.89437 1.42624 1.23310 1.32645 1.40659 1.19692 0.97478 1.08429 1.12422 0.90359 1.25666 1.03012 0.98142 1.00376 1.69832 1.41356 1.20462 1.30612 0.85065 0.79146 0.76702 0.78392 1.20949 1.22247 1.19351 1.22281 1.02831 0.94267 0.98621 1.20938 0.79197 0.84140 0.85144 1.90684 1.41473 1.27910 1.84482 0.94045 0.91958 0.92348 0.92510 0.90567 0.89647 0.93146 0.93838 0.89419 0.93016 0.86604 0.91044 0.88786 0.89084 0.91105 0.91250 0.87221 0.91546 0.94569 0.96819 0.94729 0.79727 0.93975 0.89283 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.78 16 2 C -0.12 -1.15 5.82 30.60 0.18 -0.97 16 3 C -0.13 -1.71 4.64 30.60 0.14 -1.57 16 4 C 0.15 2.06 2.86 44.99 0.13 2.19 16 5 H 0.11 0.99 8.07 -2.39 -0.02 0.97 16 6 C -0.17 -2.75 9.20 71.98 0.66 -2.08 16 7 N -0.60 -9.87 2.28 -794.04 -1.81 -11.68 16 8 C 0.12 1.56 6.82 86.83 0.59 2.15 16 9 C -0.11 -1.42 2.90 -10.48 -0.03 -1.45 16 10 H 0.15 0.83 6.63 -2.38 -0.02 0.82 16 11 C 0.52 11.06 6.72 87.66 0.59 11.65 16 12 O -0.58 -18.11 15.38 -3.03 -0.05 -18.15 16 13 N -0.61 -11.20 2.87 -846.76 -2.43 -13.63 16 14 C 0.07 0.60 9.56 127.77 1.22 1.82 16 15 C 0.13 2.97 5.33 86.38 0.46 3.43 16 16 C -0.12 -3.99 5.65 30.59 0.17 -3.82 16 17 C 0.15 6.23 6.26 86.38 0.54 6.77 16 18 N -0.75 -39.90 5.60 -343.45 -1.92 -41.82 16 19 C -0.25 -14.34 9.99 84.03 0.84 -13.50 16 20 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 21 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 22 N -0.97 -61.32 13.06 21.65 0.28 -61.04 16 23 Si 0.98 47.03 29.55 68.60 2.03 49.05 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 27 C -0.14 -2.43 6.41 30.59 0.20 -2.24 16 28 C 0.52 11.27 7.39 87.90 0.65 11.92 16 29 O -0.57 -16.65 15.07 -3.02 -0.05 -16.69 16 30 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.50 8.14 -2.38 -0.02 0.49 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.61 7.75 -2.38 -0.02 0.59 16 34 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.05 1.00 6.65 -2.39 -0.02 0.98 16 37 H 0.04 0.98 6.77 -2.39 -0.02 0.96 16 38 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 1.34 6.93 -2.39 -0.02 1.32 16 42 H 0.09 0.30 7.34 -2.39 -0.02 0.28 16 43 H 0.09 0.75 7.81 -2.39 -0.02 0.73 16 44 H 0.07 0.58 8.11 -2.39 -0.02 0.56 16 45 H 0.07 1.85 7.50 -2.39 -0.02 1.83 16 46 H 0.11 1.91 7.93 -2.39 -0.02 1.89 16 47 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 48 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.37 21.14 7.67 -92.71 -0.71 20.43 16 52 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 53 H 0.09 1.99 7.89 -2.39 -0.02 1.97 16 54 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -81.32 429.14 3.72 -77.60 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.15 Total: 27.11 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 7.52 Total: 9.26 kcal Atomic # 7 Polarization: -122.29 SS G_CDS: -5.89 Total: -128.17 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.09 Total: -34.84 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.05 kcal Total: -81.32 3.72 -77.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699551977.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.534 kcal (2) G-P(sol) polarization free energy of solvation -81.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds