Wall clock time and date at job start Sat Apr 11 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46563 * 2 1 4 4 C 1.52997 * 109.47207 * 119.99843 * 2 1 3 5 5 H 1.09001 * 109.47165 * 185.47260 * 4 2 1 6 6 C 1.50705 * 109.46858 * 65.47129 * 4 2 1 7 7 O 1.21274 * 120.00222 * 269.02105 * 6 4 2 8 8 N 1.34779 * 119.99760 * 89.02712 * 6 4 2 9 9 C 1.47148 * 120.98124 * 354.49119 * 8 6 4 10 10 C 1.53302 * 108.38060 * 129.45152 * 9 8 6 11 11 O 1.42959 * 109.22752 * 52.29895 * 10 9 8 12 12 C 1.42959 * 114.16622 * 297.42473 * 11 10 9 13 13 H 1.09004 * 109.55486 * 302.62830 * 12 11 10 14 14 C 1.52996 * 109.51486 * 182.50237 * 12 11 10 15 15 N 1.46501 * 109.47041 * 65.25047 * 14 12 11 16 16 C 1.36939 * 119.99975 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00016 * 359.72117 * 16 15 14 18 18 C 1.38820 * 120.00108 * 179.72572 * 16 15 14 19 19 N 1.31618 * 119.99697 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99611 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46768 * 90.00661 * 20 18 16 22 22 H 1.48502 * 109.46941 * 209.99882 * 20 18 16 23 23 H 1.48496 * 109.47477 * 330.00212 * 20 18 16 24 24 C 1.47150 * 120.97850 * 174.47921 * 8 6 4 25 25 N 1.46895 * 109.47109 * 305.47300 * 4 2 1 26 26 C 1.48540 * 110.99902 * 166.46147 * 25 4 2 27 27 C 1.54941 * 103.22625 * 159.72137 * 26 25 4 28 28 C 1.54598 * 102.92010 * 322.58133 * 27 26 25 29 29 C 1.47904 * 111.00155 * 283.85495 * 25 4 2 30 30 H 1.08999 * 109.47467 * 304.56514 * 1 2 3 31 31 H 1.08993 * 109.47249 * 64.57023 * 1 2 3 32 32 H 1.09007 * 109.46941 * 184.56637 * 1 2 3 33 33 H 1.09000 * 109.46869 * 240.00157 * 2 1 3 34 34 H 1.09005 * 109.47121 * 286.48554 * 3 2 1 35 35 H 1.09000 * 109.47447 * 46.49444 * 3 2 1 36 36 H 1.09001 * 109.47054 * 166.49254 * 3 2 1 37 37 H 1.08999 * 109.68513 * 249.16540 * 9 8 6 38 38 H 1.08997 * 109.68456 * 9.72744 * 9 8 6 39 39 H 1.08999 * 109.51195 * 172.22709 * 10 9 8 40 40 H 1.09005 * 109.51004 * 292.32483 * 10 9 8 41 41 H 1.09002 * 109.47141 * 305.25665 * 14 12 11 42 42 H 1.08998 * 109.47760 * 185.25039 * 14 12 11 43 43 H 0.96997 * 120.00251 * 359.72884 * 15 14 12 44 44 H 0.96999 * 119.99543 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.68480 * 110.83361 * 24 8 6 46 46 H 1.09000 * 109.71546 * 350.28602 * 24 8 6 47 47 H 1.09001 * 110.66677 * 278.15329 * 26 25 4 48 48 H 1.08993 * 110.66544 * 41.28297 * 26 25 4 49 49 H 1.09002 * 110.71636 * 204.22999 * 27 26 25 50 50 H 1.08992 * 110.72291 * 80.94547 * 27 26 25 51 51 H 1.08996 * 110.30840 * 263.04466 * 28 27 26 52 52 H 1.09003 * 110.30692 * 140.87668 * 28 27 26 53 53 H 1.09003 * 109.91276 * 333.51374 * 29 25 4 54 54 H 1.09001 * 109.91642 * 94.60646 * 29 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1257 -0.6371 1.2996 6 6 1.6514 -2.1758 1.1833 7 8 0.6023 -2.5456 1.6664 8 7 2.4698 -3.0656 0.5876 9 6 3.6883 -2.6253 -0.1099 10 6 4.8671 -3.4610 0.4020 11 8 4.5414 -4.8490 0.2961 12 6 3.4240 -5.2503 1.0924 13 1 3.6155 -5.0084 2.1379 14 6 3.2088 -6.7581 0.9480 15 7 4.3566 -7.4716 1.5133 16 6 4.3879 -8.8405 1.4966 17 1 3.5642 -9.3943 1.0706 18 6 5.4781 -9.5165 2.0271 19 7 5.5078 -10.8323 2.0114 20 14 6.9029 -8.5587 2.7632 21 1 6.6534 -8.3342 4.2098 22 1 8.1596 -9.3310 2.5918 23 1 7.0283 -7.2496 2.0735 24 6 2.1712 -4.5063 0.6159 25 7 1.4455 -0.1092 2.4450 26 6 1.6505 -0.9673 3.6400 27 6 1.4621 0.0183 4.8206 28 6 2.1116 1.3181 4.2928 29 6 2.0961 1.1814 2.7590 30 1 -0.3634 0.5830 0.8462 31 1 -0.3633 0.4413 -0.9280 32 1 -0.3633 -1.0245 0.0818 33 1 1.8933 -0.5138 -0.8900 34 1 1.8860 1.8823 -0.9855 35 1 1.4940 2.0209 0.7454 36 1 3.1031 1.4521 0.2400 37 1 3.5712 -2.7747 -1.1833 38 1 3.8688 -1.5705 0.0969 39 1 5.7520 -3.2479 -0.1977 40 1 5.0650 -3.2112 1.4444 41 1 3.1076 -7.0113 -0.1074 42 1 2.3027 -7.0485 1.4798 43 1 5.0965 -6.9743 1.8957 44 1 6.2698 -11.3046 2.3818 45 1 1.9014 -4.8450 -0.3844 46 1 1.3471 -4.6976 1.3031 47 1 0.9029 -1.7597 3.6773 48 1 2.6568 -1.3858 3.6450 49 1 1.9827 -0.3400 5.7087 50 1 0.4035 0.1729 5.0288 51 1 3.1363 1.4030 4.6548 52 1 1.5275 2.1852 4.6013 53 1 3.1164 1.1859 2.3755 54 1 1.5295 2.0004 2.3160 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700168243.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:13 Heat of formation + Delta-G solvation = -67.680019 kcal Electronic energy + Delta-G solvation = -31944.934756 eV Core-core repulsion = 27916.756333 eV Total energy + Delta-G solvation = -4028.178422 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.01627 -40.37181 -38.95779 -36.89290 -36.52801 -35.75704 -34.05176 -32.46501 -31.98807 -30.00871 -29.53268 -28.42630 -27.86889 -26.52065 -24.77592 -23.88974 -22.72947 -22.20982 -21.79096 -21.22497 -20.07362 -19.75750 -18.52257 -17.91505 -17.38152 -17.04624 -16.86591 -16.64216 -16.27677 -16.03476 -15.86188 -15.44842 -15.25685 -14.95480 -14.76015 -14.64132 -14.55286 -14.27606 -14.03612 -13.82058 -13.64255 -13.55878 -13.32304 -13.14086 -13.05171 -12.88442 -12.78711 -12.65293 -12.38200 -12.17981 -12.17147 -12.07414 -11.95172 -11.86970 -11.78202 -11.66416 -11.48427 -11.29514 -11.18511 -11.03352 -10.62288 -9.68085 -9.38135 -9.34713 -8.05071 -5.39126 1.35716 1.39274 1.44046 1.47587 1.67712 2.46775 2.65777 2.89142 3.25186 3.26580 3.37387 3.67524 3.70165 3.77162 3.83864 3.85236 3.92751 4.00200 4.02763 4.09941 4.19382 4.21675 4.26591 4.28571 4.41896 4.45627 4.57709 4.61143 4.66277 4.68533 4.73840 4.80544 4.84898 4.88203 4.92054 4.96206 5.01171 5.01595 5.03934 5.11872 5.14205 5.22020 5.22651 5.28677 5.48385 5.53934 5.71189 5.81784 5.94242 6.13478 6.18995 6.27032 7.03660 7.04615 7.78624 7.98998 9.16329 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016474 B = 0.002787 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.252451 B =10043.617186 C =10570.856983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C -0.149 4.149 4 C 0.069 3.931 5 H 0.082 0.918 6 C 0.516 3.484 7 O -0.556 6.556 8 N -0.616 5.616 9 C 0.071 3.929 10 C 0.037 3.963 11 O -0.387 6.387 12 C 0.087 3.913 13 H 0.056 0.944 14 C 0.163 3.837 15 N -0.753 5.753 16 C -0.238 4.238 17 H 0.059 0.941 18 C -0.063 4.063 19 N -0.983 5.983 20 Si 0.956 3.044 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.254 1.254 24 C 0.096 3.904 25 N -0.501 5.501 26 C 0.030 3.970 27 C -0.120 4.120 28 C -0.129 4.129 29 C 0.031 3.969 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.027 0.973 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.132 0.868 40 H 0.053 0.947 41 H 0.034 0.966 42 H 0.048 0.952 43 H 0.367 0.633 44 H 0.259 0.741 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.032 0.968 49 H 0.076 0.924 50 H 0.069 0.931 51 H 0.076 0.924 52 H 0.083 0.917 53 H 0.059 0.941 54 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.470 35.140 -2.267 35.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.096 4.096 3 C -0.206 4.206 4 C -0.043 4.043 5 H 0.099 0.901 6 C 0.305 3.695 7 O -0.433 6.433 8 N -0.351 5.351 9 C -0.050 4.050 10 C -0.040 4.040 11 O -0.306 6.306 12 C 0.028 3.972 13 H 0.074 0.926 14 C 0.036 3.964 15 N -0.399 5.399 16 C -0.368 4.368 17 H 0.077 0.923 18 C -0.254 4.254 19 N -0.633 5.633 20 Si 0.783 3.217 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.178 1.178 24 C -0.027 4.027 25 N -0.226 5.226 26 C -0.098 4.098 27 C -0.159 4.159 28 C -0.167 4.167 29 C -0.095 4.095 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.140 0.860 39 H 0.149 0.851 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.200 0.800 44 H 0.068 0.932 45 H 0.102 0.898 46 H 0.108 0.892 47 H 0.083 0.917 48 H 0.050 0.950 49 H 0.095 0.905 50 H 0.088 0.912 51 H 0.095 0.905 52 H 0.102 0.898 53 H 0.077 0.923 54 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.582 34.699 -2.306 35.221 hybrid contribution 1.429 -0.714 0.762 1.770 sum -4.153 33.986 -1.544 34.273 Atomic orbital electron populations 1.21640 0.94786 1.00855 1.01690 1.21064 0.96772 0.97644 0.94121 1.22141 1.01445 0.93817 1.03200 1.22076 0.98335 0.89169 0.94718 0.90065 1.21006 0.83253 0.88504 0.76706 1.90678 1.24548 1.80615 1.47422 1.48279 1.25368 1.06280 1.55127 1.22755 0.83148 1.00965 0.98180 1.23258 0.98240 0.80586 1.01894 1.88093 1.49021 1.25984 1.67510 1.22477 0.86482 0.94069 0.94181 0.92612 1.20730 0.90271 0.88031 0.97344 1.42558 1.21433 1.02595 1.73295 1.19050 1.03283 0.82515 1.31985 0.92341 1.25513 1.01347 0.96263 1.02309 1.69884 1.32677 1.07614 1.53121 0.85384 0.78908 0.78752 0.78651 1.20338 1.21843 1.17837 1.22021 0.97344 0.80051 1.03331 1.64654 1.53327 1.03482 1.01154 1.23267 0.98889 0.96857 0.90766 1.22443 1.01641 0.95011 0.96757 1.22454 1.01630 0.98013 0.94562 1.23342 0.98204 0.91885 0.96112 0.91958 0.92189 0.95393 0.90081 0.91449 0.91053 0.91447 0.88849 0.86005 0.85063 0.92853 0.94791 0.93442 0.80002 0.93210 0.89808 0.89231 0.91654 0.94971 0.90508 0.91194 0.90529 0.89814 0.92297 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.73 71.98 0.63 -1.73 16 2 C -0.08 -1.03 2.69 -10.79 -0.03 -1.06 16 3 C -0.15 -1.20 7.88 71.98 0.57 -0.63 16 4 C 0.07 1.14 0.92 44.17 0.04 1.18 16 5 H 0.08 1.03 5.66 -2.39 -0.01 1.01 16 6 C 0.52 12.35 5.26 87.66 0.46 12.81 16 7 O -0.56 -17.76 13.33 -3.01 -0.04 -17.80 16 8 N -0.62 -13.74 3.02 -817.34 -2.47 -16.21 16 9 C 0.07 1.09 6.43 86.36 0.56 1.64 16 10 C 0.04 0.71 6.98 72.08 0.50 1.22 16 11 O -0.39 -11.74 10.33 -148.98 -1.54 -13.28 16 12 C 0.09 2.72 2.81 30.69 0.09 2.81 16 13 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 14 C 0.16 6.46 5.93 86.38 0.51 6.97 16 15 N -0.75 -36.96 5.36 -343.45 -1.84 -38.80 16 16 C -0.24 -14.04 10.47 84.04 0.88 -13.16 16 17 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 18 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 19 N -0.98 -64.20 13.97 21.65 0.30 -63.90 16 20 Si 0.96 46.60 27.74 68.60 1.90 48.51 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 23 H -0.25 -11.36 6.52 99.48 0.65 -10.71 16 24 C 0.10 2.60 5.91 86.36 0.51 3.11 16 25 N -0.50 -8.87 4.02 -862.21 -3.47 -12.34 16 26 C 0.03 0.62 5.29 86.65 0.46 1.08 16 27 C -0.12 -1.86 7.06 31.80 0.22 -1.64 16 28 C -0.13 -1.39 6.93 31.47 0.22 -1.17 16 29 C 0.03 0.36 4.95 86.45 0.43 0.78 16 30 H 0.06 1.19 7.57 -2.39 -0.02 1.17 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.03 0.67 6.59 -2.38 -0.02 0.65 16 33 H 0.08 0.99 8.05 -2.39 -0.02 0.97 16 34 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 35 H 0.07 0.60 5.15 -2.39 -0.01 0.59 16 36 H 0.07 0.37 7.40 -2.39 -0.02 0.36 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.12 1.09 5.47 -2.39 -0.01 1.08 16 39 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.37 17.39 5.53 -92.71 -0.51 16.88 16 44 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 45 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.09 2.66 7.13 -2.39 -0.02 2.64 16 47 H 0.06 1.80 6.55 -2.39 -0.02 1.79 16 48 H 0.03 0.68 8.01 -2.39 -0.02 0.66 16 49 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 53 H 0.06 0.52 6.68 -2.39 -0.02 0.51 16 54 H 0.10 0.93 5.87 -2.39 -0.01 0.92 16 Total: -1.00 -76.96 400.13 -0.33 -77.29 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.31 Total: 27.66 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 6.51 Total: 8.87 kcal Atomic # 7 Polarization: -123.77 SS G_CDS: -7.47 Total: -131.24 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -1.58 Total: -31.08 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.90 Total: 48.51 kcal Total: -76.96 -0.33 -77.29 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700168243.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.606 kcal (2) G-P(sol) polarization free energy of solvation -76.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds