Wall clock time and date at job start Sat Apr 11 2020 05:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47416 * 2 1 4 4 C 1.53000 * 109.47260 * 120.00424 * 2 1 3 5 5 H 1.08999 * 109.46803 * 299.99759 * 4 2 1 6 6 C 1.53001 * 109.46848 * 59.99792 * 4 2 1 7 7 C 1.53001 * 109.46972 * 185.00299 * 6 4 2 8 8 N 1.46495 * 109.47622 * 179.97438 * 7 6 4 9 9 C 1.46506 * 119.99865 * 89.99464 * 8 7 6 10 10 C 1.34769 * 120.00437 * 270.00480 * 8 7 6 11 11 O 1.21291 * 119.99752 * 359.97438 * 10 8 7 12 12 C 1.50700 * 120.00170 * 179.97438 * 10 8 7 13 13 C 1.53010 * 109.46780 * 179.97438 * 12 10 8 14 14 H 1.08999 * 109.30033 * 55.41725 * 13 12 10 15 15 C 1.52919 * 109.29800 * 174.99868 * 13 12 10 16 16 C 1.53340 * 108.67543 * 171.06364 * 15 13 12 17 17 C 1.53068 * 108.42600 * 292.47002 * 16 15 13 18 18 C 1.50178 * 109.89002 * 48.89982 * 17 16 15 19 19 O 1.21281 * 118.24338 * 162.39576 * 18 17 16 20 20 N 1.33354 * 123.51058 * 342.41481 * 18 17 16 21 21 N 1.46496 * 109.47071 * 179.97438 * 4 2 1 22 22 C 1.36945 * 119.99718 * 85.00073 * 21 4 2 23 23 H 1.07997 * 119.99756 * 359.97438 * 22 21 4 24 24 C 1.38805 * 119.99878 * 179.97438 * 22 21 4 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 H 1.08996 * 109.46521 * 299.99940 * 1 2 3 31 31 H 1.09005 * 109.46989 * 59.99468 * 1 2 3 32 32 H 1.08995 * 109.46903 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46919 * 240.00513 * 2 1 3 34 34 H 1.08992 * 109.47375 * 180.02562 * 3 2 1 35 35 H 1.09009 * 109.47234 * 300.00692 * 3 2 1 36 36 H 1.08999 * 109.46985 * 60.00034 * 3 2 1 37 37 H 1.09000 * 109.47282 * 304.99563 * 6 4 2 38 38 H 1.09001 * 109.47318 * 65.00222 * 6 4 2 39 39 H 1.09001 * 109.47013 * 300.00315 * 7 6 4 40 40 H 1.09001 * 109.47162 * 59.99828 * 7 6 4 41 41 H 1.08998 * 109.46804 * 90.00420 * 9 8 7 42 42 H 1.08996 * 109.47519 * 210.00440 * 9 8 7 43 43 H 1.09005 * 109.47085 * 330.00911 * 9 8 7 44 44 H 1.08999 * 109.47176 * 299.99064 * 12 10 8 45 45 H 1.08992 * 109.47041 * 59.99952 * 12 10 8 46 46 H 1.08999 * 109.60458 * 290.82535 * 15 13 12 47 47 H 1.09007 * 109.60441 * 51.30770 * 15 13 12 48 48 H 1.09004 * 109.67311 * 52.20719 * 16 15 13 49 49 H 1.09000 * 109.67392 * 172.69997 * 16 15 13 50 50 H 1.09005 * 109.39873 * 169.02426 * 17 16 15 51 51 H 1.08997 * 109.40484 * 288.76776 * 17 16 15 52 52 H 0.96997 * 117.94571 * 182.22329 * 20 18 17 53 53 H 0.96996 * 120.00499 * 264.99803 * 21 4 2 54 54 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2490 7 6 1.9348 -2.8480 2.5564 8 7 1.4459 -4.2289 2.5567 9 6 2.2853 -5.3032 2.0203 10 6 0.2240 -4.5112 3.0501 11 8 -0.4709 -3.6219 3.4944 12 6 -0.2790 -5.9318 3.0498 13 6 -1.6813 -5.9763 3.6604 14 1 -2.3319 -5.2892 3.1193 15 6 -2.2380 -7.3959 3.5450 16 6 -3.5382 -7.4808 4.3534 17 6 -3.1950 -7.3365 5.8381 18 6 -2.2973 -6.1499 6.0421 19 8 -2.1906 -5.6968 7.1620 20 7 -1.6115 -5.5677 5.0577 21 7 3.5051 -0.7218 1.2488 22 6 4.1902 0.3528 1.7498 23 1 3.6505 1.2008 2.1448 24 6 5.5783 0.3522 1.7500 25 7 6.2360 -0.6812 1.2682 26 14 6.5129 1.8184 2.4327 27 1 6.7609 2.7977 1.3444 28 1 5.7105 2.4616 3.5040 29 1 7.8102 1.3614 2.9925 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 0.4437 -2.1651 1.1596 38 1 1.9646 -2.7028 0.4072 39 1 3.0211 -2.8466 2.6460 40 1 1.5002 -2.3089 3.3982 41 1 2.9031 -5.7145 2.8186 42 1 1.6515 -6.0892 1.6099 43 1 2.9261 -4.9052 1.2334 44 1 -0.3163 -6.3039 2.0260 45 1 0.3933 -6.5554 3.6389 46 1 -2.4420 -7.6248 2.4990 47 1 -1.5131 -8.1064 3.9425 48 1 -4.2105 -6.6774 4.0524 49 1 -4.0166 -8.4444 4.1788 50 1 -4.1126 -7.1988 6.4101 51 1 -2.6874 -8.2378 6.1817 52 1 -1.0299 -4.8258 5.2859 53 1 3.9898 -1.4833 0.8938 54 1 7.2060 -0.6814 1.2680 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700502115.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:40 Heat of formation + Delta-G solvation = -107.536620 kcal Electronic energy + Delta-G solvation = -30740.986739 eV Core-core repulsion = 26711.080005 eV Total energy + Delta-G solvation = -4029.906734 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.64745 -40.63302 -38.96306 -37.74279 -36.58582 -34.93793 -34.10031 -33.18963 -32.27088 -31.31912 -28.82000 -28.02811 -27.49110 -26.55164 -25.03231 -24.11045 -23.35617 -22.44710 -20.79736 -20.05765 -19.96700 -19.13712 -18.36878 -17.80069 -17.36035 -17.09791 -16.82139 -16.47214 -16.27165 -15.76105 -15.44406 -15.29403 -15.10175 -15.00158 -14.70379 -14.48038 -14.32875 -14.08346 -13.92054 -13.86276 -13.56200 -13.21542 -13.07620 -12.98895 -12.89382 -12.85547 -12.71227 -12.55530 -12.51613 -12.21545 -12.19091 -12.01168 -11.86818 -11.78043 -11.72997 -11.69859 -11.42018 -11.21575 -10.90492 -10.81968 -10.64490 -10.08211 -9.62950 -8.89889 -7.88888 -5.12990 1.46186 1.47488 1.54275 1.62504 1.64609 2.06193 2.36864 2.58478 3.43903 3.46580 3.61662 3.70674 3.89933 3.96163 3.97272 4.01941 4.19571 4.20727 4.27316 4.31931 4.33121 4.42742 4.50436 4.57758 4.66081 4.68154 4.73390 4.73897 4.76759 4.79946 4.91036 4.92737 4.98985 5.01943 5.03359 5.11144 5.13770 5.15197 5.17218 5.19792 5.33837 5.40547 5.40950 5.55913 5.58397 5.66662 5.75117 5.75923 6.34121 6.42713 6.50856 7.16890 7.22918 7.41480 8.15946 8.41640 9.34348 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.002381 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.837898 B =11755.232521 C =12262.428980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C -0.137 4.137 4 C 0.182 3.818 5 H 0.029 0.971 6 C -0.116 4.116 7 C 0.128 3.872 8 N -0.612 5.612 9 C 0.069 3.931 10 C 0.498 3.502 11 O -0.584 6.584 12 C -0.144 4.144 13 C 0.149 3.851 14 H 0.072 0.928 15 C -0.126 4.126 16 C -0.119 4.119 17 C -0.130 4.130 18 C 0.505 3.495 19 O -0.626 6.626 20 N -0.709 5.709 21 N -0.725 5.725 22 C -0.212 4.212 23 H 0.069 0.931 24 C -0.073 4.073 25 N -0.966 5.966 26 Si 0.954 3.046 27 H -0.291 1.291 28 H -0.277 1.277 29 H -0.298 1.298 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.110 0.890 43 H 0.069 0.931 44 H 0.150 0.850 45 H 0.117 0.883 46 H 0.117 0.883 47 H 0.088 0.912 48 H 0.065 0.935 49 H 0.108 0.892 50 H 0.099 0.901 51 H 0.117 0.883 52 H 0.389 0.611 53 H 0.374 0.626 54 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.713 -20.503 -2.740 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.126 4.126 3 C -0.194 4.194 4 C 0.073 3.927 5 H 0.047 0.953 6 C -0.155 4.155 7 C 0.005 3.995 8 N -0.343 5.343 9 C -0.072 4.072 10 C 0.288 3.712 11 O -0.465 6.465 12 C -0.183 4.183 13 C 0.045 3.955 14 H 0.090 0.910 15 C -0.163 4.163 16 C -0.157 4.157 17 C -0.169 4.169 18 C 0.295 3.705 19 O -0.510 6.510 20 N -0.359 5.359 21 N -0.365 5.365 22 C -0.345 4.345 23 H 0.087 0.913 24 C -0.265 4.265 25 N -0.617 5.617 26 Si 0.785 3.215 27 H -0.218 1.218 28 H -0.202 1.202 29 H -0.225 1.225 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.128 0.872 43 H 0.088 0.912 44 H 0.167 0.833 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.107 0.893 48 H 0.084 0.916 49 H 0.127 0.873 50 H 0.117 0.883 51 H 0.135 0.865 52 H 0.224 0.776 53 H 0.206 0.794 54 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -19.111 -19.854 -1.936 27.625 hybrid contribution 1.722 1.661 0.540 2.453 sum -17.389 -18.193 -1.396 25.205 Atomic orbital electron populations 1.21819 0.94430 1.01733 1.01439 1.21634 0.95481 0.96463 0.99067 1.21757 1.01689 0.96114 0.99841 1.20366 0.83452 0.93767 0.95111 0.95326 1.21991 1.00846 0.95399 0.97263 1.21203 0.98826 0.81720 0.97798 1.48074 1.16907 1.08607 1.60751 1.22095 0.95738 0.89884 0.99533 1.21500 0.80729 0.92514 0.76493 1.90707 1.56930 1.50419 1.48451 1.22249 0.97333 0.92102 1.06640 1.21014 0.95880 0.98510 0.80117 0.90966 1.22013 0.97495 0.92953 1.03852 1.21682 0.97832 1.04620 0.91520 1.21703 0.99349 0.95287 1.00578 1.21130 0.80415 0.85613 0.83382 1.90728 1.67845 1.66529 1.25864 1.45941 1.45766 1.35528 1.08646 1.42529 1.00688 1.19872 1.73426 1.19422 0.88942 0.96464 1.29626 0.91350 1.25282 0.97393 0.99961 1.03847 1.69766 1.06328 1.31429 1.54215 0.85421 0.78179 0.79932 0.78012 1.21803 1.20238 1.22530 0.93550 0.92067 0.92098 0.92635 0.93157 0.93003 0.94369 0.90854 0.91594 0.91355 0.93003 0.91877 0.87168 0.91196 0.83269 0.86480 0.86447 0.89292 0.91621 0.87342 0.88259 0.86487 0.77559 0.79354 0.94363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 8.85 71.98 0.64 -3.17 16 2 C -0.11 -3.64 2.69 -10.79 -0.03 -3.67 16 3 C -0.14 -5.08 8.26 71.98 0.59 -4.49 16 4 C 0.18 7.00 2.02 44.99 0.09 7.09 16 5 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 6 C -0.12 -3.68 4.86 30.59 0.15 -3.53 16 7 C 0.13 4.15 5.29 86.38 0.46 4.61 16 8 N -0.61 -14.54 2.87 -846.75 -2.43 -16.97 16 9 C 0.07 1.08 10.24 127.77 1.31 2.39 16 10 C 0.50 11.46 7.32 87.66 0.64 12.10 16 11 O -0.58 -18.73 14.07 -3.06 -0.04 -18.78 16 12 C -0.14 -1.62 3.91 29.85 0.12 -1.50 16 13 C 0.15 1.97 2.65 45.11 0.12 2.09 16 14 H 0.07 1.15 7.96 -2.39 -0.02 1.13 16 15 C -0.13 -0.61 5.30 30.68 0.16 -0.45 16 16 C -0.12 -0.75 6.03 30.73 0.19 -0.57 16 17 C -0.13 -1.64 6.03 29.71 0.18 -1.46 16 18 C 0.51 12.09 7.71 87.71 0.68 12.77 16 19 O -0.63 -22.06 17.78 -3.03 -0.05 -22.11 16 20 N -0.71 -15.56 5.00 -446.63 -2.23 -17.80 16 21 N -0.73 -34.20 4.45 -322.95 -1.44 -35.64 16 22 C -0.21 -11.30 7.57 84.03 0.64 -10.66 16 23 H 0.07 3.63 7.39 -2.91 -0.02 3.60 16 24 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 25 N -0.97 -57.01 13.06 21.65 0.28 -56.73 16 26 Si 0.95 46.18 29.55 68.60 2.03 48.20 16 27 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 29 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.06 1.56 6.32 -2.39 -0.02 1.55 16 33 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.05 2.23 6.01 -2.39 -0.01 2.21 16 35 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 2.22 6.17 -2.39 -0.01 2.21 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.07 2.52 7.68 -2.39 -0.02 2.51 16 40 H 0.05 1.95 7.42 -2.39 -0.02 1.94 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.11 0.77 6.44 -2.39 -0.02 0.76 16 43 H 0.07 1.25 8.07 -2.38 -0.02 1.23 16 44 H 0.15 0.54 7.40 -2.39 -0.02 0.52 16 45 H 0.12 1.01 8.11 -2.39 -0.02 0.99 16 46 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 47 H 0.09 0.27 8.11 -2.38 -0.02 0.25 16 48 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 49 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 50 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 51 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.39 11.07 6.84 -92.71 -0.63 10.43 16 53 H 0.37 18.77 7.80 -92.71 -0.72 18.04 16 54 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -77.67 418.17 2.03 -75.64 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: -0.47 Total: 36.24 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 6.39 Total: 7.95 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -5.82 Total: -127.14 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -0.10 Total: -40.89 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -77.67 2.03 -75.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700502115.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.900 kcal (2) G-P(sol) polarization free energy of solvation -77.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds