Wall clock time and date at job start Sat Apr 11 2020 05:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21277 * 120.00217 * 2 1 4 4 N 1.34775 * 119.99671 * 179.97438 * 2 1 3 5 5 C 1.46506 * 120.00097 * 180.02562 * 4 2 1 6 6 H 1.08997 * 109.46933 * 35.00015 * 5 4 2 7 7 C 1.50698 * 109.47405 * 154.99913 * 5 4 2 8 8 O 1.21284 * 119.99909 * 30.85331 * 7 5 4 9 9 N 1.34768 * 120.00154 * 210.85441 * 7 5 4 10 10 C 1.46501 * 120.00037 * 175.24776 * 9 7 5 11 11 C 1.53003 * 109.46985 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.45066 * 65.05016 * 11 10 9 13 13 C 1.54871 * 109.44679 * 184.99676 * 11 10 9 14 14 C 1.47097 * 110.31902 * 191.30870 * 13 11 10 15 15 C 1.52574 * 114.32237 * 297.19571 * 14 13 11 16 16 C 1.50881 * 109.35745 * 85.01534 * 15 14 13 17 17 C 1.53948 * 110.09547 * 268.11054 * 16 15 14 18 18 N 1.44578 * 109.45165 * 305.12498 * 11 10 9 19 19 C 1.36937 * 118.64475 * 329.24107 * 18 11 10 20 20 H 1.07999 * 119.99750 * 334.94755 * 19 18 11 21 21 C 1.38810 * 120.00434 * 154.94554 * 19 18 11 22 22 N 1.31620 * 119.99813 * 341.16750 * 21 19 18 23 23 Si 1.86800 * 120.00161 * 161.16267 * 21 19 18 24 24 H 1.48505 * 109.46753 * 60.00477 * 23 21 19 25 25 H 1.48500 * 109.46902 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47115 * 300.00234 * 23 21 19 27 27 C 1.52999 * 109.47065 * 275.00119 * 5 4 2 28 28 C 1.53007 * 109.47293 * 60.93787 * 27 5 4 29 29 C 1.53001 * 109.47190 * 180.93423 * 27 5 4 30 30 H 1.09001 * 109.46963 * 270.00609 * 1 2 3 31 31 H 1.09004 * 109.46984 * 30.00543 * 1 2 3 32 32 H 1.08996 * 109.46941 * 150.00404 * 1 2 3 33 33 H 0.97001 * 120.00130 * 0.02562 * 4 2 1 34 34 H 0.97001 * 120.00368 * 355.24411 * 9 7 5 35 35 H 1.09000 * 109.47159 * 299.99421 * 10 9 7 36 36 H 1.08997 * 109.47331 * 59.99882 * 10 9 7 37 37 H 1.08994 * 109.32828 * 311.56963 * 13 11 10 38 38 H 1.09000 * 109.32893 * 71.04562 * 13 11 10 39 39 H 1.08994 * 108.51474 * 58.45321 * 14 13 11 40 40 H 1.08998 * 108.51067 * 176.10681 * 14 13 11 41 41 H 1.09003 * 109.48594 * 204.98201 * 15 14 13 42 42 H 1.09002 * 109.49291 * 325.02576 * 15 14 13 43 43 H 1.08995 * 109.36844 * 28.30459 * 16 15 14 44 44 H 1.09007 * 109.36387 * 148.04911 * 16 15 14 45 45 H 1.09005 * 108.94673 * 161.25076 * 17 16 15 46 46 H 1.08998 * 108.95004 * 279.96793 * 17 16 15 47 47 H 0.97002 * 119.99655 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.47300 * 300.94177 * 27 5 4 49 49 H 1.09004 * 109.46902 * 59.99810 * 28 27 5 50 50 H 1.08994 * 109.47286 * 179.97438 * 28 27 5 51 51 H 1.09004 * 109.46864 * 300.00581 * 28 27 5 52 52 H 1.09006 * 109.46849 * 66.06840 * 29 27 5 53 53 H 1.08998 * 109.47272 * 186.06154 * 29 27 5 54 54 H 1.08998 * 109.47045 * 306.07239 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0011 6 1 4.0090 -0.3254 0.5905 7 6 4.1480 -2.4549 0.6020 8 8 3.5000 -3.4731 0.4825 9 7 5.3170 -2.4749 1.2723 10 6 5.7547 -3.7005 1.9451 11 6 7.1034 -3.4553 2.6247 12 1 6.9810 -2.7190 3.4190 13 6 7.6256 -4.7827 3.2280 14 6 8.7742 -4.5257 4.1103 15 6 9.9878 -3.9285 3.4043 16 6 9.8328 -2.4297 3.3251 17 6 9.1479 -2.0379 2.0032 18 7 8.0501 -2.9596 1.6510 19 6 7.9230 -3.3615 0.3481 20 1 7.4341 -4.2963 0.1167 21 6 8.4225 -2.5675 -0.6751 22 7 8.6758 -1.2946 -0.4564 23 14 8.7351 -3.3056 -2.3624 24 1 7.4634 -3.8409 -2.9118 25 1 9.2649 -2.2572 -3.2708 26 1 9.7258 -4.4056 -2.2457 27 6 4.1564 -1.0419 -1.4357 28 6 3.6661 0.2764 -2.0381 29 6 5.6863 -1.0655 -1.4373 30 1 -0.3633 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6958 -2.0073 0.0005 34 1 5.8686 -1.6779 1.3093 35 1 5.0167 -3.9871 2.6943 36 1 5.8578 -4.5005 1.2120 37 1 6.8290 -5.2564 3.8015 38 1 7.9319 -5.4494 2.4219 39 1 8.4596 -3.8404 4.8973 40 1 9.0735 -5.4668 4.5717 41 1 10.8906 -4.1717 3.9646 42 1 10.0623 -4.3404 2.3979 43 1 9.2267 -2.0842 4.1625 44 1 10.8161 -1.9617 3.3731 45 1 8.7464 -1.0290 2.0981 46 1 9.8886 -2.0499 1.2036 47 1 9.0252 -0.7398 -1.1714 48 1 3.7796 -1.8748 -2.0293 49 1 4.0430 1.1094 -1.4445 50 1 4.0302 0.3659 -3.0615 51 1 2.5762 0.2932 -2.0369 52 1 6.0349 -2.0448 -1.1093 53 1 6.0517 -0.8686 -2.4452 54 1 6.0621 -0.3000 -0.7584 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700531035.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:43 Heat of formation + Delta-G solvation = -81.651851 kcal Electronic energy + Delta-G solvation = -32990.114850 eV Core-core repulsion = 28961.330564 eV Total energy + Delta-G solvation = -4028.784287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.61771 -40.28765 -39.47845 -36.97135 -36.05403 -35.18812 -34.44724 -33.18853 -32.41392 -30.88986 -29.13718 -28.00530 -27.52820 -26.64406 -25.14059 -23.67196 -21.95019 -21.60189 -21.27444 -20.84156 -20.73106 -18.85288 -18.01282 -17.56035 -17.22743 -17.03071 -16.76543 -16.32097 -16.10359 -15.92742 -15.62836 -15.20758 -15.11088 -14.82725 -14.52653 -14.47046 -14.15990 -13.78469 -13.62907 -13.57449 -13.36119 -13.27255 -13.12152 -13.07464 -12.92018 -12.81753 -12.75816 -12.65449 -12.45150 -12.38084 -11.96883 -11.85116 -11.79211 -11.48803 -11.37199 -11.28876 -11.16067 -11.05106 -10.90043 -10.76585 -10.19896 -10.08364 -9.78431 -8.50608 -7.71602 -5.08503 1.42639 1.48522 1.51507 1.54520 1.68941 1.99420 2.57361 2.66069 3.42941 3.63436 3.69724 3.80090 3.92494 3.97955 4.07164 4.11288 4.29752 4.31468 4.38326 4.45959 4.53821 4.56703 4.63940 4.64400 4.69952 4.70757 4.80516 4.84234 4.97276 5.03720 5.07170 5.09441 5.11600 5.14934 5.16703 5.27774 5.30224 5.33671 5.40975 5.43834 5.45406 5.57923 5.63986 5.67553 5.74214 5.78966 5.86017 5.96117 6.53041 6.56121 6.68410 7.25017 7.28078 7.34602 8.08376 8.47256 9.31556 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.004320 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.297724 B = 6479.803010 C = 7656.533700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.505 3.495 3 O -0.581 6.581 4 N -0.708 5.708 5 C 0.144 3.856 6 H 0.094 0.906 7 C 0.513 3.487 8 O -0.582 6.582 9 N -0.682 5.682 10 C 0.132 3.868 11 C 0.173 3.827 12 H 0.055 0.945 13 C -0.127 4.127 14 C -0.100 4.100 15 C -0.103 4.103 16 C -0.133 4.133 17 C 0.189 3.811 18 N -0.586 5.586 19 C -0.236 4.236 20 H 0.047 0.953 21 C 0.000 4.000 22 N -0.899 5.899 23 Si 0.904 3.096 24 H -0.290 1.290 25 H -0.298 1.298 26 H -0.295 1.295 27 C -0.092 4.092 28 C -0.121 4.121 29 C -0.130 4.130 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.415 0.585 34 H 0.409 0.591 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.042 0.958 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.043 0.957 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.003 0.997 46 H 0.042 0.958 47 H 0.245 0.755 48 H 0.066 0.934 49 H 0.049 0.951 50 H 0.054 0.946 51 H 0.055 0.945 52 H 0.064 0.936 53 H 0.039 0.961 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.145 -0.439 6.206 11.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.294 3.706 3 O -0.461 6.461 4 N -0.362 5.362 5 C 0.035 3.965 6 H 0.112 0.888 7 C 0.298 3.702 8 O -0.464 6.464 9 N -0.330 5.330 10 C 0.007 3.993 11 C 0.065 3.935 12 H 0.073 0.927 13 C -0.168 4.168 14 C -0.137 4.137 15 C -0.140 4.140 16 C -0.172 4.172 17 C 0.065 3.935 18 N -0.308 5.308 19 C -0.366 4.366 20 H 0.065 0.935 21 C -0.198 4.198 22 N -0.545 5.545 23 Si 0.736 3.264 24 H -0.217 1.217 25 H -0.225 1.225 26 H -0.222 1.222 27 C -0.112 4.112 28 C -0.178 4.178 29 C -0.188 4.188 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.253 0.747 34 H 0.246 0.754 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.021 0.979 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.084 0.916 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.074 0.926 52 H 0.083 0.917 53 H 0.058 0.942 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.099 -0.260 6.080 11.790 hybrid contribution 0.852 -0.440 -1.552 1.824 sum -9.247 -0.699 4.528 10.320 Atomic orbital electron populations 1.21902 0.87614 1.06275 1.06322 1.21625 0.92334 0.82417 0.74177 1.90729 1.71732 1.32559 1.51111 1.45915 1.05012 1.10216 1.75043 1.20671 0.82712 0.95671 0.97492 0.88815 1.20561 0.81665 0.90090 0.77896 1.90602 1.58989 1.35541 1.61241 1.45779 1.20084 1.15919 1.51244 1.21510 0.95784 0.86638 0.95342 1.20652 0.87036 0.94656 0.91117 0.92722 1.21279 0.98373 0.98227 0.98920 1.20267 0.94877 1.00646 0.97939 1.20899 0.97631 0.95472 1.00038 1.21938 0.99986 0.96558 0.98690 1.20783 0.89190 0.90204 0.93363 1.43740 1.28957 1.54238 1.03885 1.18824 1.34249 1.00287 0.83248 0.93538 1.24837 1.02790 0.94845 0.97319 1.70101 1.48940 1.03648 1.31762 0.86384 0.77593 0.77614 0.84773 1.21689 1.22465 1.22231 1.21397 0.96705 0.99296 0.93786 1.21720 1.00645 0.95572 0.99878 1.21762 0.92671 1.03514 1.00890 0.87096 0.88240 0.87872 0.74750 0.75429 0.91378 0.93645 0.90964 0.93907 0.92134 0.92175 0.92157 0.93862 0.92361 0.92373 0.97931 0.93976 0.94534 0.91555 0.93160 0.92677 0.92648 0.91700 0.94192 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 10.30 71.24 0.73 -1.55 16 2 C 0.50 12.63 6.33 87.66 0.56 13.19 16 3 O -0.58 -19.23 14.22 -3.02 -0.04 -19.28 16 4 N -0.71 -18.66 4.96 -446.09 -2.21 -20.87 16 5 C 0.14 4.66 2.23 44.24 0.10 4.76 16 6 H 0.09 3.24 7.58 -2.39 -0.02 3.23 16 7 C 0.51 18.50 6.09 87.66 0.53 19.03 16 8 O -0.58 -23.01 16.13 -3.04 -0.05 -23.06 16 9 N -0.68 -24.87 3.93 -463.07 -1.82 -26.69 16 10 C 0.13 4.64 4.53 86.38 0.39 5.04 16 11 C 0.17 5.92 2.19 45.99 0.10 6.02 16 12 H 0.05 1.80 8.06 -2.39 -0.02 1.78 16 13 C -0.13 -3.81 5.07 29.40 0.15 -3.66 16 14 C -0.10 -2.69 5.15 28.62 0.15 -2.55 16 15 C -0.10 -3.15 5.51 29.76 0.16 -2.98 16 16 C -0.13 -4.31 5.71 30.23 0.17 -4.14 16 17 C 0.19 7.81 4.69 86.49 0.41 8.21 16 18 N -0.59 -23.86 1.78 -674.25 -1.20 -25.06 16 19 C -0.24 -11.00 7.34 84.03 0.62 -10.38 16 20 H 0.05 2.33 6.63 -2.91 -0.02 2.31 16 21 C 0.00 -0.01 2.95 84.86 0.25 0.24 16 22 N -0.90 -44.85 10.71 21.65 0.23 -44.62 16 23 Si 0.90 42.64 29.44 68.60 2.02 44.66 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 25 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 26 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 27 C -0.09 -3.09 2.69 -10.79 -0.03 -3.12 16 28 C -0.12 -3.78 7.73 71.98 0.56 -3.23 16 29 C -0.13 -5.12 7.64 71.98 0.55 -4.57 16 30 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.41 9.78 7.86 -92.71 -0.73 9.05 16 34 H 0.41 15.87 7.82 -92.71 -0.73 15.15 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.05 1.83 6.78 -2.39 -0.02 1.82 16 37 H 0.07 1.83 8.11 -2.39 -0.02 1.81 16 38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.50 7.36 -2.39 -0.02 1.49 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.04 1.60 7.48 -2.39 -0.02 1.58 16 43 H 0.06 1.74 7.32 -2.39 -0.02 1.72 16 44 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.00 0.12 8.05 -2.38 -0.02 0.10 16 46 H 0.04 2.02 6.31 -2.39 -0.02 2.00 16 47 H 0.24 12.52 8.31 -92.71 -0.77 11.74 16 48 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 49 H 0.05 1.71 7.59 -2.38 -0.02 1.69 16 50 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.05 1.64 5.75 -2.39 -0.01 1.62 16 52 H 0.06 2.86 4.82 -2.38 -0.01 2.85 16 53 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 54 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -57.36 402.18 1.76 -55.59 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -0.56 Total: 39.02 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 5.40 Total: 20.30 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -5.00 Total: -117.24 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -0.09 Total: -42.34 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.02 Total: 44.66 kcal Total: -57.36 1.76 -55.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700531035.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.058 kcal (2) G-P(sol) polarization free energy of solvation -57.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds