Wall clock time and date at job start Sat Apr 11 2020 05:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21281 * 119.99953 * 2 1 4 4 N 1.34781 * 119.99756 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99866 * 180.02562 * 4 2 1 6 6 H 1.09001 * 109.47183 * 34.99305 * 5 4 2 7 7 C 1.50696 * 109.47202 * 155.00149 * 5 4 2 8 8 O 1.21282 * 119.99980 * 21.45604 * 7 5 4 9 9 N 1.34780 * 119.99813 * 201.45587 * 7 5 4 10 10 C 1.46501 * 119.99849 * 184.94986 * 9 7 5 11 11 C 1.52996 * 109.46890 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.42846 * 295.06730 * 11 10 9 13 13 C 1.54310 * 109.18823 * 175.34920 * 11 10 9 14 14 C 1.47099 * 110.29374 * 168.68961 * 13 11 10 15 15 C 1.52568 * 114.32710 * 62.73567 * 14 13 11 16 16 C 1.50885 * 109.35089 * 274.97783 * 15 14 13 17 17 C 1.53942 * 110.09449 * 91.88701 * 16 15 14 18 18 N 1.44577 * 109.45506 * 54.99939 * 11 10 9 19 19 C 1.36939 * 118.63906 * 30.75852 * 18 11 10 20 20 H 1.07996 * 120.00151 * 29.82685 * 19 18 11 21 21 C 1.38814 * 119.99916 * 209.82169 * 19 18 11 22 22 N 1.31619 * 119.99665 * 206.37583 * 21 19 18 23 23 Si 1.86794 * 120.00026 * 26.37630 * 21 19 18 24 24 H 1.48500 * 109.47298 * 272.26468 * 23 21 19 25 25 H 1.48503 * 109.46944 * 152.26441 * 23 21 19 26 26 H 1.48505 * 109.47211 * 32.26522 * 23 21 19 27 27 C 1.52996 * 109.46863 * 275.00236 * 5 4 2 28 28 C 1.53005 * 109.47174 * 297.87189 * 27 5 4 29 29 C 1.53008 * 109.47605 * 57.87025 * 27 5 4 30 30 H 1.09001 * 109.46863 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46947 * 300.00269 * 1 2 3 32 32 H 1.08999 * 109.46506 * 60.00509 * 1 2 3 33 33 H 0.96996 * 120.00105 * 0.02562 * 4 2 1 34 34 H 0.97002 * 120.00043 * 4.95404 * 9 7 5 35 35 H 1.08999 * 109.46806 * 60.00324 * 10 9 7 36 36 H 1.08997 * 109.46860 * 299.99819 * 10 9 7 37 37 H 1.09002 * 109.40025 * 48.40104 * 13 11 10 38 38 H 1.09000 * 109.14583 * 288.81733 * 13 11 10 39 39 H 1.08993 * 108.51290 * 301.47610 * 14 13 11 40 40 H 1.09001 * 108.38743 * 183.89938 * 14 13 11 41 41 H 1.09001 * 109.49231 * 155.01687 * 15 14 13 42 42 H 1.08996 * 109.49445 * 34.94043 * 15 14 13 43 43 H 1.09003 * 109.36727 * 331.69596 * 16 15 14 44 44 H 1.08999 * 109.25772 * 212.01455 * 16 15 14 45 45 H 1.08998 * 108.95000 * 198.74824 * 17 16 15 46 46 H 1.09007 * 108.94845 * 80.12244 * 17 16 15 47 47 H 0.97002 * 120.00323 * 5.10775 * 22 21 19 48 48 H 1.08999 * 109.47395 * 177.87154 * 27 5 4 49 49 H 1.08999 * 109.46989 * 59.99716 * 28 27 5 50 50 H 1.08999 * 109.47226 * 180.02562 * 28 27 5 51 51 H 1.09000 * 109.46713 * 299.99712 * 28 27 5 52 52 H 1.09001 * 109.46729 * 51.81461 * 29 27 5 53 53 H 1.08998 * 109.47456 * 171.81744 * 29 27 5 54 54 H 1.08998 * 109.46732 * 291.81772 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6459 -1.1673 0.0011 6 1 4.0091 -0.3253 0.5904 7 6 4.1480 -2.4548 0.6020 8 8 3.4285 -3.4307 0.6330 9 7 5.3967 -2.5219 1.1049 10 6 5.9233 -3.8001 1.5899 11 6 7.3501 -3.6012 2.1051 12 1 7.9984 -3.3164 1.2764 13 6 7.8558 -4.9226 2.7209 14 6 9.3021 -4.8451 2.9780 15 6 9.7042 -3.7766 3.9901 16 6 9.8534 -2.4510 3.2850 17 6 8.5237 -1.6766 3.3276 18 7 7.3599 -2.5567 3.1048 19 6 6.2454 -2.3803 3.8806 20 1 5.6087 -3.2218 4.1105 21 6 5.9340 -1.1198 4.3717 22 7 5.2330 -0.9998 5.4792 23 14 6.5098 0.4059 3.4607 24 1 7.8687 0.7789 3.9292 25 1 5.5702 1.5249 3.7261 26 1 6.5481 0.1269 2.0026 27 6 4.1564 -1.0418 -1.4357 28 6 3.6909 -2.2508 -2.2498 29 6 3.6034 0.2392 -2.0636 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.6959 -2.0073 0.0005 34 1 5.9466 -1.7239 1.1457 35 1 5.9285 -4.5236 0.7748 36 1 5.2933 -4.1689 2.3993 37 1 7.6553 -5.7432 2.0320 38 1 7.3317 -5.1033 3.6594 39 1 9.8104 -4.6386 2.0362 40 1 9.6383 -5.8144 3.3460 41 1 10.6524 -4.0516 4.4520 42 1 8.9351 -3.6954 4.7582 43 1 10.1381 -2.6237 2.2471 44 1 10.6286 -1.8659 3.7799 45 1 8.5377 -0.9064 2.5565 46 1 8.4240 -1.1978 4.3018 47 1 4.9974 -1.7887 5.9920 48 1 5.2457 -1.0038 -1.4323 49 1 2.6015 -2.2889 -2.2532 50 1 4.0549 -2.1617 -3.2733 51 1 4.0849 -3.1634 -1.8026 52 1 3.8109 1.0844 -1.4072 53 1 4.0788 0.4046 -3.0304 54 1 2.5265 0.1412 -2.2003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700531037.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:47 Heat of formation + Delta-G solvation = -90.390157 kcal Electronic energy + Delta-G solvation = -32776.723907 eV Core-core repulsion = 28747.560700 eV Total energy + Delta-G solvation = -4029.163208 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.72648 -40.42962 -39.65986 -37.07123 -36.13346 -35.35246 -34.26107 -33.41195 -33.14019 -30.92402 -29.28409 -28.12679 -27.78165 -26.80225 -25.11650 -23.73537 -22.34739 -21.75231 -21.24484 -21.08745 -20.60449 -19.13631 -18.46767 -17.82810 -17.29947 -17.07633 -16.97755 -16.70326 -15.99530 -15.89648 -15.65501 -15.59774 -15.35178 -14.88899 -14.67216 -14.59549 -14.47786 -14.27945 -13.87404 -13.68952 -13.53965 -13.35320 -13.33905 -13.15840 -12.95154 -12.91030 -12.80533 -12.49947 -12.37534 -12.10210 -12.08157 -11.89946 -11.86491 -11.55929 -11.46169 -11.36097 -11.23258 -11.05150 -10.92771 -10.83695 -10.51195 -10.11218 -9.92699 -8.89837 -8.46884 -5.44625 1.38066 1.45614 1.48023 1.65262 1.67144 1.98227 2.51555 2.56404 3.05328 3.37321 3.58684 3.71173 3.89284 3.92023 3.94473 3.99584 4.16239 4.17886 4.29584 4.32607 4.37520 4.48246 4.49327 4.52158 4.59540 4.65544 4.71954 4.77532 4.82005 4.88897 4.91899 4.94974 4.98714 5.03225 5.08287 5.10661 5.11869 5.14707 5.28236 5.33112 5.37268 5.38390 5.42311 5.47635 5.51340 5.56663 5.68201 5.95115 6.34645 6.51899 6.54364 6.98309 7.16408 7.22431 7.72541 8.11100 8.91254 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013106 B = 0.004252 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.919260 B = 6583.306758 C = 7442.053993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.503 3.497 3 O -0.583 6.583 4 N -0.705 5.705 5 C 0.130 3.870 6 H 0.079 0.921 7 C 0.513 3.487 8 O -0.574 6.574 9 N -0.692 5.692 10 C 0.136 3.864 11 C 0.170 3.830 12 H 0.077 0.923 13 C -0.127 4.127 14 C -0.101 4.101 15 C -0.108 4.108 16 C -0.125 4.125 17 C 0.128 3.872 18 N -0.599 5.599 19 C -0.300 4.300 20 H 0.024 0.976 21 C -0.053 4.053 22 N -0.958 5.958 23 Si 1.073 2.927 24 H -0.274 1.274 25 H -0.327 1.327 26 H -0.256 1.256 27 C -0.094 4.094 28 C -0.137 4.137 29 C -0.130 4.130 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.414 0.586 34 H 0.404 0.596 35 H 0.078 0.922 36 H 0.032 0.968 37 H 0.077 0.923 38 H 0.029 0.971 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.033 0.967 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.027 0.973 46 H 0.036 0.964 47 H 0.247 0.753 48 H 0.089 0.911 49 H 0.058 0.942 50 H 0.076 0.924 51 H 0.044 0.956 52 H 0.048 0.952 53 H 0.071 0.929 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.884 -3.827 -16.622 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.293 3.707 3 O -0.463 6.463 4 N -0.360 5.360 5 C 0.020 3.980 6 H 0.097 0.903 7 C 0.298 3.702 8 O -0.455 6.455 9 N -0.341 5.341 10 C 0.012 3.988 11 C 0.063 3.937 12 H 0.095 0.905 13 C -0.167 4.167 14 C -0.139 4.139 15 C -0.146 4.146 16 C -0.164 4.164 17 C 0.003 3.997 18 N -0.323 5.323 19 C -0.431 4.431 20 H 0.042 0.958 21 C -0.249 4.249 22 N -0.600 5.600 23 Si 0.901 3.099 24 H -0.200 1.200 25 H -0.257 1.257 26 H -0.181 1.181 27 C -0.114 4.114 28 C -0.194 4.194 29 C -0.187 4.187 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.131 0.869 33 H 0.252 0.748 34 H 0.240 0.760 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.052 0.948 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.045 0.955 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.107 0.893 49 H 0.077 0.923 50 H 0.095 0.905 51 H 0.063 0.937 52 H 0.067 0.933 53 H 0.090 0.910 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.783 -2.180 -16.644 16.880 hybrid contribution -0.366 -1.600 1.324 2.109 sum 1.416 -3.779 -15.319 15.842 Atomic orbital electron populations 1.21869 0.87854 1.06135 1.06210 1.21601 0.92346 0.82553 0.74224 1.90701 1.71610 1.32600 1.51363 1.45893 1.05211 1.10052 1.74822 1.20847 0.83250 0.95160 0.98726 0.90254 1.20609 0.81950 0.89828 0.77777 1.90603 1.56221 1.38822 1.59842 1.45781 1.15032 1.13077 1.60177 1.21468 0.95303 0.84726 0.97321 1.20683 0.93191 0.89131 0.90738 0.90542 1.21167 0.97195 0.98115 1.00251 1.20291 0.95482 0.98601 0.99485 1.20941 1.00163 0.95177 0.98279 1.21821 0.96216 0.96745 1.01575 1.21665 0.87330 0.92472 0.98200 1.44062 1.11206 1.37922 1.39134 1.19643 1.03922 0.93087 1.26405 0.95804 1.26904 0.98052 1.02075 0.97828 1.70962 1.43365 1.31499 1.14183 0.83759 0.75234 0.73930 0.76971 1.19988 1.25703 1.18082 1.21452 1.01075 0.97687 0.91153 1.21757 1.01720 0.95808 1.00116 1.21798 1.00634 0.95745 1.00543 0.88293 0.88365 0.86864 0.74764 0.76043 0.90419 0.94958 0.90439 0.95233 0.90856 0.92199 0.91374 0.94789 0.90292 0.90942 0.95501 0.94597 0.94349 0.89265 0.92279 0.90469 0.93724 0.93304 0.90963 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 10.39 71.24 0.74 -2.15 16 2 C 0.50 14.32 6.34 87.66 0.56 14.87 16 3 O -0.58 -21.13 14.04 -3.03 -0.04 -21.18 16 4 N -0.71 -20.28 4.24 -446.09 -1.89 -22.17 16 5 C 0.13 4.16 2.42 44.24 0.11 4.27 16 6 H 0.08 3.01 7.58 -2.39 -0.02 2.99 16 7 C 0.51 18.55 5.86 87.66 0.51 19.06 16 8 O -0.57 -22.75 15.56 -3.04 -0.05 -22.80 16 9 N -0.69 -25.21 4.72 -463.07 -2.18 -27.39 16 10 C 0.14 4.85 4.51 86.38 0.39 5.24 16 11 C 0.17 5.63 2.17 45.79 0.10 5.73 16 12 H 0.08 2.17 8.06 -2.39 -0.02 2.15 16 13 C -0.13 -3.80 5.04 29.20 0.15 -3.65 16 14 C -0.10 -2.58 5.15 28.62 0.15 -2.43 16 15 C -0.11 -3.14 5.51 29.76 0.16 -2.98 16 16 C -0.12 -3.55 5.71 30.22 0.17 -3.38 16 17 C 0.13 4.82 4.04 86.49 0.35 5.16 16 18 N -0.60 -24.47 1.49 -675.34 -1.01 -25.48 16 19 C -0.30 -15.57 7.79 84.03 0.65 -14.92 16 20 H 0.02 1.44 6.99 -2.91 -0.02 1.42 16 21 C -0.05 -2.98 4.98 84.86 0.42 -2.56 16 22 N -0.96 -60.60 13.70 21.65 0.30 -60.30 16 23 Si 1.07 51.45 24.54 68.60 1.68 53.14 16 24 H -0.27 -12.12 6.65 99.48 0.66 -11.46 16 25 H -0.33 -17.32 7.11 99.48 0.71 -16.61 16 26 H -0.26 -10.54 6.15 99.48 0.61 -9.92 16 27 C -0.09 -2.37 2.82 -10.79 -0.03 -2.40 16 28 C -0.14 -3.00 8.74 71.98 0.63 -2.38 16 29 C -0.13 -3.20 7.63 71.98 0.55 -2.65 16 30 H 0.10 1.30 7.91 -2.39 -0.02 1.28 16 31 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.41 10.87 7.59 -92.71 -0.70 10.16 16 34 H 0.40 14.88 6.85 -92.71 -0.63 14.25 16 35 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.03 1.41 6.87 -2.39 -0.02 1.39 16 37 H 0.08 1.93 8.10 -2.39 -0.02 1.91 16 38 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.56 7.36 -2.39 -0.02 1.55 16 40 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.03 1.27 7.48 -2.39 -0.02 1.26 16 43 H 0.08 1.87 7.32 -2.39 -0.02 1.86 16 44 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.03 0.97 6.34 -2.39 -0.02 0.96 16 46 H 0.04 1.59 5.95 -2.38 -0.01 1.57 16 47 H 0.25 15.95 8.73 -92.71 -0.81 15.14 16 48 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.06 1.26 7.67 -2.39 -0.02 1.25 16 50 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.04 1.12 6.90 -2.39 -0.02 1.10 16 52 H 0.05 1.45 6.80 -2.39 -0.02 1.44 16 53 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 54 H 0.05 1.21 6.56 -2.39 -0.02 1.20 16 Total: -1.00 -71.84 399.75 1.79 -70.05 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: -0.62 Total: 41.27 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 5.61 Total: 14.87 kcal Atomic # 7 Polarization: -130.55 SS G_CDS: -4.79 Total: -135.34 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -0.09 Total: -43.97 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 1.68 Total: 53.14 kcal Total: -71.84 1.79 -70.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700531037.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.343 kcal (2) G-P(sol) polarization free energy of solvation -71.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds