Wall clock time and date at job start Sat Apr 11 2020 05:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47270 * 2 1 4 4 C 1.52997 * 109.47452 * 239.99869 * 2 1 3 5 5 C 1.50700 * 109.47147 * 119.99643 * 2 1 3 6 6 O 1.21287 * 119.99912 * 0.02562 * 5 2 1 7 7 N 1.34774 * 120.00562 * 179.97438 * 5 2 1 8 8 C 1.46499 * 120.00552 * 180.02562 * 7 5 2 9 9 C 1.50700 * 109.47554 * 180.02562 * 8 7 5 10 10 O 1.21287 * 119.99595 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00231 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00338 * 179.97438 * 11 9 8 13 13 C 1.52991 * 109.47182 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.45337 * 65.05506 * 13 12 11 15 15 C 1.54865 * 109.44737 * 185.00197 * 13 12 11 16 16 C 1.47099 * 110.32395 * 191.30145 * 15 13 12 17 17 C 1.52564 * 114.21303 * 297.27697 * 16 15 13 18 18 C 1.50678 * 109.46311 * 85.13398 * 17 16 15 19 19 C 1.53944 * 109.98450 * 267.96735 * 18 17 16 20 20 N 1.44582 * 109.45183 * 305.12766 * 13 12 11 21 21 C 1.36939 * 118.64255 * 329.26245 * 20 13 12 22 22 H 1.07994 * 119.99571 * 331.68096 * 21 20 13 23 23 C 1.38806 * 119.99636 * 151.67694 * 21 20 13 24 24 N 1.31619 * 120.00400 * 344.49485 * 23 21 20 25 25 Si 1.86806 * 119.99637 * 164.48860 * 23 21 20 26 26 H 1.48497 * 109.47114 * 90.00669 * 25 23 21 27 27 H 1.48505 * 109.46871 * 210.00013 * 25 23 21 28 28 H 1.48500 * 109.47222 * 330.00063 * 25 23 21 29 29 H 1.09005 * 109.47265 * 300.00523 * 1 2 3 30 30 H 1.09008 * 109.46864 * 59.99885 * 1 2 3 31 31 H 1.08997 * 109.47347 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47057 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46678 * 299.99501 * 3 2 1 34 34 H 1.08994 * 109.47077 * 59.99784 * 3 2 1 35 35 H 1.09003 * 109.46922 * 299.99656 * 4 2 1 36 36 H 1.08997 * 109.47480 * 59.99897 * 4 2 1 37 37 H 1.09002 * 109.47296 * 180.02562 * 4 2 1 38 38 H 0.97002 * 119.99716 * 0.02562 * 7 5 2 39 39 H 1.09002 * 109.47182 * 59.99996 * 8 7 5 40 40 H 1.09005 * 109.46856 * 300.00272 * 8 7 5 41 41 H 0.97001 * 119.99855 * 0.02562 * 11 9 8 42 42 H 1.09002 * 109.46884 * 60.00052 * 12 11 9 43 43 H 1.09004 * 109.46704 * 300.00958 * 12 11 9 44 44 H 1.08999 * 109.33047 * 71.04248 * 15 13 12 45 45 H 1.08999 * 109.32990 * 311.56433 * 15 13 12 46 46 H 1.09002 * 108.50903 * 58.45376 * 16 15 13 47 47 H 1.08999 * 108.51027 * 176.09963 * 16 15 13 48 48 H 1.08989 * 109.49202 * 204.89397 * 17 16 15 49 49 H 1.09000 * 109.48572 * 324.97344 * 17 16 15 50 50 H 1.08999 * 109.44676 * 147.79762 * 18 17 16 51 51 H 1.09002 * 109.29783 * 28.05018 * 18 17 16 52 52 H 1.08997 * 108.95251 * 279.84693 * 19 18 17 53 53 H 1.09009 * 108.87656 * 161.16835 * 19 18 17 54 54 H 0.97004 * 119.99763 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 8 1.2441 -1.1716 2.0287 7 7 3.3573 -0.8340 1.4436 8 6 3.8456 -1.5250 2.6395 9 6 5.3526 -1.5249 2.6397 10 8 5.9591 -0.9998 1.7300 11 7 6.0264 -2.1084 3.6506 12 6 7.4915 -2.1089 3.6505 13 6 8.0013 -2.8304 4.8995 14 1 7.7133 -3.8807 4.8549 15 6 9.5448 -2.7212 4.9641 16 6 10.0782 -3.6247 5.9951 17 6 9.6140 -3.3007 7.4118 18 6 8.2806 -3.9550 7.6653 19 6 7.1413 -2.9824 7.3105 20 7 7.4225 -2.2225 6.0767 21 6 7.1224 -0.8868 6.0455 22 1 7.6874 -0.2211 5.4100 23 6 6.0919 -0.3886 6.8308 24 7 5.2135 -1.2113 7.3636 25 14 5.9519 1.4498 7.1316 26 1 5.1081 2.0616 6.0738 27 1 5.3311 1.6882 8.4594 28 1 7.3049 2.0609 7.1007 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7216 -1.2489 38 1 3.9877 -0.4654 0.8051 39 1 3.4820 -2.5526 2.6394 40 1 3.4825 -1.0112 3.5297 41 1 5.5414 -2.5287 4.3779 42 1 7.8551 -1.0813 3.6501 43 1 7.8545 -2.6229 2.7605 44 1 9.8242 -1.6953 5.2039 45 1 9.9663 -2.9902 3.9956 46 1 9.7720 -4.6429 5.7549 47 1 11.1667 -3.5764 5.9680 48 1 10.3425 -3.6793 8.1287 49 1 9.5188 -2.2208 7.5252 50 1 8.2058 -4.2310 8.7171 51 1 8.1960 -4.8507 7.0498 52 1 7.0046 -2.2818 8.1342 53 1 6.2216 -3.5513 7.1738 54 1 4.4936 -0.8631 7.9126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700532799.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:51 Heat of formation + Delta-G solvation = -91.384996 kcal Electronic energy + Delta-G solvation = -31499.020622 eV Core-core repulsion = 27469.814275 eV Total energy + Delta-G solvation = -4029.206347 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.47163 -40.57621 -39.56040 -36.65107 -36.14251 -35.51456 -35.19832 -33.31449 -32.47553 -29.86057 -28.33591 -28.24677 -27.87399 -26.93824 -25.20164 -24.05740 -23.22926 -21.62798 -21.10728 -20.79133 -20.51191 -18.59059 -17.92382 -17.53076 -17.31730 -17.03870 -16.85760 -16.29911 -16.15982 -15.93035 -15.75912 -15.22683 -15.17753 -14.82803 -14.71396 -14.63773 -14.29435 -14.11752 -13.78313 -13.54653 -13.38631 -13.32855 -13.11808 -13.06120 -12.90295 -12.88908 -12.82717 -12.69469 -12.64597 -12.38686 -12.01982 -11.92851 -11.88346 -11.54341 -11.39494 -11.31612 -11.19531 -11.13197 -10.88980 -10.77490 -10.36384 -10.29109 -9.84050 -8.54692 -7.80467 -5.23448 1.38803 1.45836 1.49043 1.51609 1.60967 1.86260 2.50705 2.57427 3.35151 3.54976 3.60546 3.74795 3.84128 3.90566 4.05211 4.09708 4.21268 4.27123 4.28719 4.38525 4.43910 4.51901 4.62612 4.68350 4.69453 4.70805 4.81031 4.82355 4.92432 4.93542 4.99649 5.02408 5.09240 5.14350 5.15479 5.23484 5.26975 5.27979 5.30922 5.35919 5.39867 5.43600 5.56048 5.61844 5.68784 5.77040 5.79824 5.90573 6.43567 6.46758 6.62861 7.13113 7.22165 7.26524 8.00979 8.39560 9.22780 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013853 B = 0.003106 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.806929 B = 9011.977659 C = 9973.870034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.081 4.081 3 C -0.141 4.141 4 C -0.137 4.137 5 C 0.515 3.485 6 O -0.582 6.582 7 N -0.708 5.708 8 C 0.106 3.894 9 C 0.510 3.490 10 O -0.582 6.582 11 N -0.683 5.683 12 C 0.134 3.866 13 C 0.172 3.828 14 H 0.057 0.943 15 C -0.128 4.128 16 C -0.100 4.100 17 C -0.104 4.104 18 C -0.132 4.132 19 C 0.189 3.811 20 N -0.588 5.588 21 C -0.232 4.232 22 H 0.051 0.949 23 C -0.025 4.025 24 N -0.918 5.918 25 Si 0.927 3.073 26 H -0.298 1.298 27 H -0.297 1.297 28 H -0.280 1.280 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.415 0.585 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.410 0.590 42 H 0.045 0.955 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.074 0.926 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.061 0.939 49 H 0.042 0.958 50 H 0.059 0.941 51 H 0.060 0.940 52 H 0.036 0.964 53 H 0.002 0.998 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.114 -3.120 -13.274 13.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.084 4.084 3 C -0.198 4.198 4 C -0.195 4.195 5 C 0.303 3.697 6 O -0.462 6.462 7 N -0.362 5.362 8 C -0.021 4.021 9 C 0.295 3.705 10 O -0.464 6.464 11 N -0.331 5.331 12 C 0.009 3.991 13 C 0.064 3.936 14 H 0.075 0.925 15 C -0.168 4.168 16 C -0.138 4.138 17 C -0.141 4.141 18 C -0.171 4.171 19 C 0.064 3.936 20 N -0.310 5.310 21 C -0.363 4.363 22 H 0.068 0.932 23 C -0.221 4.221 24 N -0.564 5.564 25 Si 0.758 3.242 26 H -0.226 1.226 27 H -0.224 1.224 28 H -0.205 1.205 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.254 0.746 39 H 0.122 0.878 40 H 0.100 0.900 41 H 0.246 0.754 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.061 0.939 50 H 0.078 0.922 51 H 0.079 0.921 52 H 0.054 0.946 53 H 0.021 0.979 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.103 -3.093 -13.197 13.555 hybrid contribution -0.295 1.285 1.109 1.723 sum -0.398 -1.808 -12.089 12.230 Atomic orbital electron populations 1.21667 0.91521 1.02374 1.02652 1.20877 0.98258 0.96938 0.92308 1.21908 1.01536 0.92769 1.03605 1.21884 1.01590 1.00332 0.95649 1.21419 0.81238 0.78894 0.88156 1.90682 1.56208 1.50556 1.48751 1.45736 1.07735 1.58199 1.24569 1.20913 0.90950 1.00150 0.90131 1.20439 0.89769 0.78076 0.82184 1.90597 1.70511 1.47514 1.37763 1.45656 1.08013 1.55943 1.23522 1.21511 0.79125 1.00421 0.98032 1.20702 0.92500 0.95283 0.85110 0.92471 1.21285 0.96626 0.99681 0.99250 1.20276 1.00005 0.99365 0.94142 1.20871 0.96113 1.00176 0.96964 1.21903 0.96072 0.98588 1.00545 1.20773 0.92683 0.92194 0.87939 1.43772 1.72178 1.06108 1.08971 1.18961 1.09425 0.84941 1.22944 0.93160 1.25246 0.96060 0.98469 1.02361 1.70108 1.15077 1.33416 1.37789 0.85913 0.77212 0.84583 0.76456 1.22619 1.22365 1.20515 0.93603 0.88991 0.92955 0.91958 0.88468 0.93322 0.92494 0.88664 0.91789 0.74581 0.87753 0.89995 0.75402 0.93634 0.91004 0.93939 0.90707 0.91997 0.91976 0.92004 0.93932 0.92223 0.92131 0.94568 0.97949 0.94565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 7.76 71.98 0.56 -1.89 16 2 C -0.08 -1.66 0.87 -52.93 -0.05 -1.71 16 3 C -0.14 -2.50 8.37 71.98 0.60 -1.90 16 4 C -0.14 -2.13 8.37 71.98 0.60 -1.53 16 5 C 0.51 15.32 6.48 87.66 0.57 15.89 16 6 O -0.58 -21.96 15.98 -3.05 -0.05 -22.01 16 7 N -0.71 -20.89 5.31 -466.78 -2.48 -23.37 16 8 C 0.11 3.51 6.15 85.63 0.53 4.03 16 9 C 0.51 18.31 7.90 87.66 0.69 19.01 16 10 O -0.58 -22.62 15.67 -3.05 -0.05 -22.67 16 11 N -0.68 -24.95 4.71 -463.06 -2.18 -27.14 16 12 C 0.13 4.69 4.52 86.38 0.39 5.08 16 13 C 0.17 5.89 2.19 45.98 0.10 5.99 16 14 H 0.06 1.87 8.07 -2.39 -0.02 1.85 16 15 C -0.13 -3.81 5.06 29.40 0.15 -3.66 16 16 C -0.10 -2.69 5.17 28.61 0.15 -2.54 16 17 C -0.10 -3.17 5.48 29.70 0.16 -3.01 16 18 C -0.13 -4.33 5.72 30.16 0.17 -4.16 16 19 C 0.19 8.01 4.66 86.49 0.40 8.42 16 20 N -0.59 -24.62 1.76 -674.26 -1.19 -25.81 16 21 C -0.23 -11.23 7.61 84.03 0.64 -10.59 16 22 H 0.05 2.56 6.75 -2.91 -0.02 2.54 16 23 C -0.02 -1.28 4.86 84.86 0.41 -0.87 16 24 N -0.92 -49.15 11.13 21.65 0.24 -48.91 16 25 Si 0.93 44.16 29.58 68.60 2.03 46.19 16 26 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 27 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 28 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 29 H 0.04 1.05 8.10 -2.38 -0.02 1.03 16 30 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 32 H 0.06 1.12 7.56 -2.39 -0.02 1.10 16 33 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 0.99 7.56 -2.39 -0.02 0.98 16 38 H 0.42 11.33 6.27 -92.71 -0.58 10.75 16 39 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.08 3.06 8.14 -2.38 -0.02 3.04 16 41 H 0.41 15.91 8.07 -92.71 -0.75 15.16 16 42 H 0.05 1.83 6.85 -2.39 -0.02 1.81 16 43 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.07 1.86 8.11 -2.39 -0.02 1.84 16 46 H 0.06 1.51 7.36 -2.39 -0.02 1.50 16 47 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.04 1.58 7.47 -2.39 -0.02 1.56 16 50 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.06 1.80 7.31 -2.39 -0.02 1.79 16 52 H 0.04 1.79 6.47 -2.39 -0.02 1.77 16 53 H 0.00 0.11 8.02 -2.38 -0.02 0.09 16 54 H 0.24 13.25 8.31 -92.71 -0.77 12.48 16 Total: -1.00 -61.79 414.73 1.96 -59.84 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: -0.45 Total: 37.32 kcal Atomic # 6 Polarization: 20.49 SS G_CDS: 6.08 Total: 26.57 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -5.61 Total: -125.23 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -0.10 Total: -44.68 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -61.79 1.96 -59.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700532799.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.550 kcal (2) G-P(sol) polarization free energy of solvation -61.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds