Wall clock time and date at job start Sat Apr 11 2020 05:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47055 * 2 1 4 4 C 1.52999 * 109.47696 * 239.99842 * 2 1 3 5 5 C 1.50704 * 109.47213 * 119.99524 * 2 1 3 6 6 O 1.21283 * 119.99601 * 0.02562 * 5 2 1 7 7 N 1.34769 * 120.00471 * 179.97438 * 5 2 1 8 8 C 1.46502 * 120.00512 * 180.02562 * 7 5 2 9 9 C 1.50698 * 109.47127 * 180.02562 * 8 7 5 10 10 O 1.21278 * 120.00269 * 0.02562 * 9 8 7 11 11 N 1.34786 * 119.99691 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99619 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46675 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.42928 * 295.06840 * 13 12 11 15 15 C 1.54306 * 109.18898 * 175.34780 * 13 12 11 16 16 C 1.47091 * 110.29879 * 168.69054 * 15 13 12 17 17 C 1.52575 * 114.32503 * 62.73228 * 16 15 13 18 18 C 1.50880 * 109.35329 * 274.98458 * 17 16 15 19 19 C 1.53944 * 110.09651 * 91.88572 * 18 17 16 20 20 N 1.44583 * 109.44854 * 55.00071 * 13 12 11 21 21 C 1.36928 * 118.64654 * 30.76090 * 20 13 12 22 22 H 1.08003 * 119.99753 * 26.72544 * 21 20 13 23 23 C 1.38805 * 120.00471 * 206.72902 * 21 20 13 24 24 N 1.31619 * 120.00510 * 201.59360 * 23 21 20 25 25 Si 1.86806 * 119.99760 * 21.59456 * 23 21 20 26 26 H 1.48499 * 109.46931 * 265.95242 * 25 23 21 27 27 H 1.48495 * 109.47197 * 145.95363 * 25 23 21 28 28 H 1.48498 * 109.47228 * 25.94963 * 25 23 21 29 29 H 1.08994 * 109.47367 * 300.00377 * 1 2 3 30 30 H 1.09002 * 109.46846 * 60.00087 * 1 2 3 31 31 H 1.09003 * 109.46556 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47065 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46738 * 299.99638 * 3 2 1 34 34 H 1.09003 * 109.47161 * 59.99745 * 3 2 1 35 35 H 1.09004 * 109.46741 * 300.00216 * 4 2 1 36 36 H 1.08999 * 109.47193 * 59.99690 * 4 2 1 37 37 H 1.08994 * 109.47727 * 179.97438 * 4 2 1 38 38 H 0.97014 * 119.99942 * 0.02562 * 7 5 2 39 39 H 1.08994 * 109.46554 * 60.00454 * 8 7 5 40 40 H 1.08994 * 109.46877 * 300.00402 * 8 7 5 41 41 H 0.96996 * 119.99917 * 0.02562 * 11 9 8 42 42 H 1.08994 * 109.47510 * 60.00165 * 12 11 9 43 43 H 1.09003 * 109.47285 * 300.00122 * 12 11 9 44 44 H 1.09001 * 109.40354 * 48.40072 * 15 13 12 45 45 H 1.09001 * 109.14364 * 288.81707 * 15 13 12 46 46 H 1.09001 * 108.51224 * 301.48083 * 16 15 13 47 47 H 1.08992 * 108.51747 * 183.98993 * 16 15 13 48 48 H 1.08992 * 109.49044 * 155.01923 * 17 16 15 49 49 H 1.08995 * 109.48981 * 34.94447 * 17 16 15 50 50 H 1.09000 * 109.36982 * 331.69323 * 18 17 16 51 51 H 1.08998 * 109.36536 * 212.07924 * 18 17 16 52 52 H 1.09000 * 108.94706 * 198.75020 * 19 18 17 53 53 H 1.08998 * 108.94440 * 80.12303 * 19 18 17 54 54 H 0.96998 * 119.99731 * 5.13538 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2305 6 8 1.2442 -1.1716 2.0287 7 7 3.3573 -0.8339 1.4436 8 6 3.8457 -1.5249 2.6396 9 6 5.3527 -1.5248 2.6396 10 8 5.9591 -0.9989 1.7305 11 7 6.0266 -2.1083 3.6506 12 6 7.4916 -2.1077 3.6509 13 6 8.0015 -2.8295 4.8999 14 1 7.7113 -2.2673 5.7875 15 6 9.5401 -2.9282 4.8359 16 6 10.0774 -3.3693 6.1322 17 6 9.6253 -4.7628 6.5586 18 6 8.2888 -4.6644 7.2519 19 6 7.1495 -4.8476 6.2329 20 7 7.4253 -4.1542 4.9594 21 6 7.1281 -4.7941 3.7858 22 1 7.6769 -4.5555 2.8867 23 6 6.1216 -5.7493 3.7516 24 7 6.1026 -6.6514 2.7934 25 14 4.7938 -5.7543 5.0656 26 1 5.1804 -6.6848 6.1564 27 1 3.5085 -6.1981 4.4688 28 1 4.6370 -4.3841 5.6162 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6768 -1.7490 -1.2491 36 1 1.6768 -0.2075 -2.1392 37 1 3.1301 -0.7209 -1.2494 38 1 3.9878 -0.4653 0.8050 39 1 3.4821 -2.5524 2.6393 40 1 3.4826 -1.0112 3.5297 41 1 5.5416 -2.5286 4.3779 42 1 7.8545 -1.0800 3.6512 43 1 7.8554 -2.6212 2.7609 44 1 9.9556 -1.9518 4.5867 45 1 9.8205 -3.6468 4.0658 46 1 9.7676 -2.6561 6.8960 47 1 11.1659 -3.3606 6.0768 48 1 10.3590 -5.1899 7.2421 49 1 9.5327 -5.4000 5.6792 50 1 8.1976 -3.6862 7.7240 51 1 8.2195 -5.4397 8.0149 52 1 6.2271 -4.4525 6.6585 53 1 7.0190 -5.9116 6.0355 54 1 6.8313 -6.6959 2.1548 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700532800.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:54 Heat of formation + Delta-G solvation = -93.558435 kcal Electronic energy + Delta-G solvation = -31590.595787 eV Core-core repulsion = 27561.295192 eV Total energy + Delta-G solvation = -4029.300595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.51445 -40.69657 -39.75696 -36.65582 -36.25259 -35.56781 -35.32673 -33.48819 -33.13994 -29.97300 -28.40849 -28.25099 -27.86425 -26.99539 -25.19838 -24.06020 -23.33015 -21.74214 -21.23556 -21.10333 -20.54707 -18.97663 -18.24125 -17.63046 -17.32740 -17.25308 -16.83169 -16.66990 -16.29220 -15.93102 -15.74501 -15.57090 -15.24234 -14.83097 -14.74220 -14.58761 -14.44650 -14.22668 -14.11621 -13.78671 -13.62772 -13.44301 -13.33259 -13.07683 -12.98947 -12.90050 -12.88478 -12.64648 -12.53368 -12.09295 -11.92844 -11.88583 -11.77619 -11.50797 -11.45431 -11.34066 -11.19349 -11.09058 -10.87935 -10.79258 -10.59382 -10.31372 -9.95589 -8.87639 -8.47244 -5.42116 1.42772 1.47518 1.52196 1.56757 1.69778 1.81852 2.48236 2.60045 3.09553 3.37909 3.53118 3.67818 3.82576 3.90246 3.91459 3.98554 4.16976 4.18539 4.24012 4.29008 4.32638 4.33779 4.47043 4.50069 4.69349 4.70246 4.71828 4.80308 4.81057 4.88067 4.92259 4.93653 4.97609 4.99597 5.09370 5.11606 5.12404 5.15322 5.23200 5.30521 5.32510 5.36062 5.37581 5.45947 5.50264 5.54422 5.67463 5.93729 6.34174 6.41019 6.51631 6.99946 7.10482 7.13891 7.72892 8.10814 8.96053 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.003117 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.912341 B = 8981.663436 C = 9865.952424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 C -0.137 4.137 4 C -0.142 4.142 5 C 0.516 3.484 6 O -0.580 6.580 7 N -0.709 5.709 8 C 0.101 3.899 9 C 0.509 3.491 10 O -0.579 6.579 11 N -0.689 5.689 12 C 0.136 3.864 13 C 0.172 3.828 14 H 0.078 0.922 15 C -0.128 4.128 16 C -0.101 4.101 17 C -0.108 4.108 18 C -0.125 4.125 19 C 0.116 3.884 20 N -0.601 5.601 21 C -0.298 4.298 22 H 0.027 0.973 23 C -0.061 4.061 24 N -0.965 5.965 25 Si 1.082 2.918 26 H -0.285 1.285 27 H -0.326 1.326 28 H -0.244 1.244 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.415 0.585 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.407 0.593 42 H 0.078 0.922 43 H 0.033 0.967 44 H 0.077 0.923 45 H 0.029 0.971 46 H 0.073 0.927 47 H 0.059 0.941 48 H 0.067 0.933 49 H 0.033 0.967 50 H 0.079 0.921 51 H 0.072 0.928 52 H 0.036 0.964 53 H 0.039 0.961 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.095 16.493 2.407 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.084 4.084 3 C -0.194 4.194 4 C -0.199 4.199 5 C 0.304 3.696 6 O -0.459 6.459 7 N -0.364 5.364 8 C -0.027 4.027 9 C 0.295 3.705 10 O -0.461 6.461 11 N -0.337 5.337 12 C 0.011 3.989 13 C 0.065 3.935 14 H 0.096 0.904 15 C -0.169 4.169 16 C -0.139 4.139 17 C -0.146 4.146 18 C -0.164 4.164 19 C -0.008 4.008 20 N -0.325 5.325 21 C -0.428 4.428 22 H 0.045 0.955 23 C -0.255 4.255 24 N -0.608 5.608 25 Si 0.910 3.090 26 H -0.212 1.212 27 H -0.256 1.256 28 H -0.168 1.168 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.254 0.746 39 H 0.103 0.897 40 H 0.132 0.868 41 H 0.243 0.757 42 H 0.096 0.904 43 H 0.051 0.949 44 H 0.095 0.905 45 H 0.048 0.952 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.052 0.948 50 H 0.097 0.903 51 H 0.091 0.909 52 H 0.054 0.946 53 H 0.057 0.943 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.554 15.837 2.870 16.482 hybrid contribution 1.720 -0.483 -0.962 2.029 sum -1.834 15.354 1.908 15.580 Atomic orbital electron populations 1.21666 0.91424 1.02156 1.02951 1.20880 0.98324 0.97363 0.91842 1.21884 1.01530 0.92091 1.03933 1.21910 1.01453 1.00170 0.96364 1.21385 0.81180 0.78896 0.88120 1.90675 1.56125 1.50376 1.48758 1.45745 1.07792 1.58033 1.24827 1.21019 0.90543 0.99847 0.91288 1.20549 0.89987 0.78093 0.81898 1.90608 1.70596 1.48179 1.36716 1.45638 1.07970 1.55494 1.24610 1.21481 0.79146 0.99244 0.98990 1.20645 0.92392 0.85004 0.95484 0.90421 1.21179 0.96828 1.00727 0.98125 1.20287 1.00052 0.96475 0.97071 1.20944 0.96651 0.97609 0.99410 1.21813 0.94494 1.02793 0.97260 1.21788 0.97018 0.95694 0.86294 1.44067 1.73289 1.13702 1.01448 1.19782 1.14724 1.19448 0.88872 0.95496 1.26980 1.01531 0.94455 1.02567 1.70961 1.35738 1.34465 1.19634 0.83704 0.73841 0.77771 0.73655 1.21166 1.25595 1.16810 0.92790 0.89077 0.93573 0.91879 0.88752 0.92322 0.93309 0.88517 0.92110 0.74622 0.89685 0.86805 0.75676 0.90437 0.94874 0.90464 0.95208 0.90883 0.92237 0.91396 0.94776 0.90275 0.90902 0.94633 0.94276 0.94618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 7.76 71.98 0.56 -1.83 16 2 C -0.08 -1.64 0.87 -52.92 -0.05 -1.69 16 3 C -0.14 -2.08 8.37 71.98 0.60 -1.48 16 4 C -0.14 -2.56 8.37 71.98 0.60 -1.96 16 5 C 0.52 14.93 6.48 87.66 0.57 15.50 16 6 O -0.58 -21.04 15.98 -3.04 -0.05 -21.09 16 7 N -0.71 -20.41 5.31 -466.81 -2.48 -22.89 16 8 C 0.10 3.15 6.15 85.63 0.53 3.68 16 9 C 0.51 17.86 7.90 87.65 0.69 18.55 16 10 O -0.58 -22.68 15.67 -3.02 -0.05 -22.73 16 11 N -0.69 -24.02 4.72 -463.05 -2.19 -26.21 16 12 C 0.14 4.72 4.50 86.38 0.39 5.11 16 13 C 0.17 5.58 2.17 45.79 0.10 5.68 16 14 H 0.08 2.15 8.06 -2.39 -0.02 2.13 16 15 C -0.13 -3.79 5.04 29.20 0.15 -3.64 16 16 C -0.10 -2.55 5.15 28.62 0.15 -2.41 16 17 C -0.11 -3.12 5.51 29.76 0.16 -2.95 16 18 C -0.12 -3.48 5.71 30.22 0.17 -3.31 16 19 C 0.12 4.27 4.01 86.49 0.35 4.61 16 20 N -0.60 -23.99 1.57 -675.34 -1.06 -25.05 16 21 C -0.30 -15.15 7.96 84.03 0.67 -14.48 16 22 H 0.03 1.59 6.86 -2.91 -0.02 1.57 16 23 C -0.06 -3.37 5.12 84.86 0.43 -2.94 16 24 N -0.96 -60.30 13.70 21.65 0.30 -60.00 16 25 Si 1.08 49.94 24.46 68.60 1.68 51.61 16 26 H -0.28 -12.51 6.77 99.48 0.67 -11.83 16 27 H -0.33 -16.37 7.11 99.48 0.71 -15.66 16 28 H -0.24 -9.37 6.43 99.48 0.64 -8.73 16 29 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.03 8.10 -2.39 -0.02 1.02 16 32 H 0.06 0.96 7.56 -2.39 -0.02 0.95 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 1.13 7.56 -2.39 -0.02 1.11 16 38 H 0.41 11.23 6.27 -92.70 -0.58 10.65 16 39 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 40 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.41 13.96 8.08 -92.71 -0.75 13.21 16 42 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.03 1.41 6.80 -2.39 -0.02 1.40 16 44 H 0.08 1.91 8.10 -2.39 -0.02 1.89 16 45 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 1.54 7.36 -2.39 -0.02 1.52 16 47 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.03 1.27 7.48 -2.39 -0.02 1.25 16 50 H 0.08 1.84 7.32 -2.39 -0.02 1.82 16 51 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 52 H 0.04 1.24 5.88 -2.39 -0.01 1.22 16 53 H 0.04 1.68 5.34 -2.39 -0.01 1.67 16 54 H 0.24 15.67 8.73 -92.71 -0.81 14.86 16 Total: -1.00 -71.02 408.10 1.65 -69.37 By element: Atomic # 1 Polarization: 41.11 SS G_CDS: -0.58 Total: 40.53 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 6.07 Total: 16.46 kcal Atomic # 7 Polarization: -128.73 SS G_CDS: -5.43 Total: -134.16 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -0.10 Total: -43.81 kcal Atomic # 14 Polarization: 49.94 SS G_CDS: 1.68 Total: 51.61 kcal Total: -71.02 1.65 -69.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700532800.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.188 kcal (2) G-P(sol) polarization free energy of solvation -71.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds