Wall clock time and date at job start Sat Apr 11 2020 05:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47395 * 305.00572 * 4 3 2 6 6 C 1.52999 * 109.46811 * 65.00188 * 4 3 2 7 7 C 1.50699 * 109.47053 * 184.99965 * 4 3 2 8 8 O 1.21280 * 120.00014 * 0.02562 * 7 4 3 9 9 N 1.34773 * 119.99755 * 179.97438 * 7 4 3 10 10 C 1.46501 * 119.99786 * 179.97438 * 9 7 4 11 11 C 1.53006 * 109.47084 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.01563 * 305.70634 * 11 10 9 13 13 C 1.53870 * 110.02873 * 67.09459 * 11 10 9 14 14 C 1.54271 * 106.60013 * 119.28589 * 13 11 10 15 15 C 1.54889 * 104.19353 * 23.60752 * 14 13 11 16 16 H 1.09008 * 110.75638 * 80.37287 * 15 14 13 17 17 N 1.46897 * 110.75654 * 203.56064 * 15 14 13 18 18 C 1.46904 * 111.00103 * 273.54358 * 17 15 14 19 19 C 1.50696 * 109.47112 * 179.97438 * 18 17 15 20 20 O 1.21293 * 120.00166 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99590 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99390 * 180.02562 * 21 19 18 23 23 H 1.08006 * 120.00716 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99959 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00579 * 180.02562 * 24 22 21 26 26 Si 1.86806 * 119.99782 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47217 * 89.99602 * 26 24 22 28 28 H 1.48498 * 109.47042 * 210.00080 * 26 24 22 29 29 H 1.48502 * 109.46865 * 329.99787 * 26 24 22 30 30 C 1.54262 * 110.03124 * 184.31316 * 11 10 9 31 31 H 1.08996 * 109.47134 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46997 * 299.99574 * 1 2 3 33 33 H 1.08992 * 109.47534 * 59.99520 * 1 2 3 34 34 H 1.09001 * 109.46993 * 239.99869 * 2 1 3 35 35 H 1.09004 * 109.47298 * 120.00283 * 2 1 3 36 36 H 1.09001 * 109.46832 * 60.00325 * 3 2 1 37 37 H 1.08993 * 109.47194 * 299.99846 * 3 2 1 38 38 H 1.09009 * 109.47170 * 300.00068 * 6 4 3 39 39 H 1.09001 * 109.47273 * 59.99848 * 6 4 3 40 40 H 1.09002 * 109.46911 * 179.97438 * 6 4 3 41 41 H 0.96999 * 120.00431 * 0.02562 * 9 7 4 42 42 H 1.08994 * 109.47827 * 300.00208 * 10 9 7 43 43 H 1.09004 * 109.46974 * 60.00865 * 10 9 7 44 44 H 1.09001 * 110.03405 * 238.56704 * 13 11 10 45 45 H 1.09000 * 110.03871 * 0.02562 * 13 11 10 46 46 H 1.08993 * 110.48756 * 142.28428 * 14 13 11 47 47 H 1.08995 * 110.48583 * 264.93011 * 14 13 11 48 48 H 1.00894 * 111.00039 * 37.50087 * 17 15 14 49 49 H 1.08998 * 109.46953 * 300.00650 * 18 17 15 50 50 H 1.09005 * 109.46504 * 60.00263 * 18 17 15 51 51 H 0.96999 * 120.00201 * 359.97438 * 21 19 18 52 52 H 0.96999 * 120.00328 * 179.97438 * 25 24 22 53 53 H 1.08993 * 110.48937 * 335.78147 * 30 11 10 54 54 H 1.08998 * 110.48521 * 98.43596 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8528 0.8408 6 6 4.0794 0.8331 -1.3083 7 6 4.0724 2.8579 0.1232 8 8 3.2843 3.7761 0.2045 9 7 5.3974 3.1031 0.1446 10 6 5.8858 4.4791 0.2644 11 6 7.4159 4.4791 0.2639 12 1 7.7892 3.8114 1.0404 13 6 7.9424 4.0342 -1.1117 14 6 8.7726 5.2099 -1.6672 15 6 9.1993 6.0024 -0.4066 16 1 10.0569 5.5313 0.0740 17 7 9.4984 7.3998 -0.7468 18 6 10.8938 7.5489 -1.1810 19 6 11.1625 8.9922 -1.5212 20 8 10.2787 9.8157 -1.4122 21 7 12.3850 9.3679 -1.9467 22 6 12.6295 10.6810 -2.2557 23 1 11.8428 11.4145 -2.1579 24 6 13.8900 11.0685 -2.6938 25 7 14.1246 12.3272 -2.9895 26 14 15.2510 9.8001 -2.8623 27 1 15.2248 9.2249 -4.2312 28 1 16.5650 10.4492 -2.6231 29 1 15.0450 8.7178 -1.8666 30 6 7.9444 5.9094 0.4979 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8898 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6766 1.9562 0.8900 37 1 1.6767 1.9563 -0.8899 38 1 3.7160 -0.1907 -1.3979 39 1 3.7157 1.4227 -2.1499 40 1 5.1694 0.8335 -1.3090 41 1 6.0278 2.3687 0.0800 42 1 5.5226 5.0683 -0.5775 43 1 5.5225 4.9138 1.1957 44 1 8.5721 3.1512 -1.0029 45 1 7.1080 3.8188 -1.7792 46 1 9.6486 4.8402 -2.1999 47 1 8.1621 5.8327 -2.3208 48 1 8.8621 7.7450 -1.4496 49 1 11.5599 7.2345 -0.3776 50 1 11.0685 6.9299 -2.0611 51 1 13.0919 8.7094 -2.0335 52 1 15.0046 12.5977 -3.2950 53 1 7.2002 6.6455 0.1942 54 1 8.2161 6.0492 1.5441 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707103501.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:01 Heat of formation + Delta-G solvation = -132.186947 kcal Electronic energy + Delta-G solvation = -28772.490533 eV Core-core repulsion = 24741.514880 eV Total energy + Delta-G solvation = -4030.975653 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.11284 -40.41077 -39.53256 -37.01598 -36.43664 -35.92147 -34.57216 -33.73830 -32.86018 -30.40333 -29.69832 -27.73753 -27.48118 -26.03131 -24.93271 -24.16554 -22.09137 -21.52940 -21.24788 -20.97043 -20.43493 -20.16361 -18.05811 -17.76005 -17.31532 -17.11328 -16.71445 -16.55445 -16.28341 -15.90078 -15.69781 -15.61876 -15.06987 -14.86619 -14.82010 -14.50438 -14.35639 -14.20099 -13.94985 -13.91011 -13.61867 -13.40016 -13.18074 -13.14228 -12.98510 -12.75200 -12.71483 -12.41549 -12.29429 -12.14736 -12.02088 -11.97022 -11.85560 -11.81605 -11.70767 -11.57283 -11.51028 -11.40482 -11.33253 -10.71412 -10.43061 -10.25294 -10.08459 -9.22113 -8.41439 -6.02796 1.30370 1.35903 1.45214 1.65510 1.95786 2.20708 2.23408 2.75155 3.15112 3.37439 3.60551 3.70048 3.73401 3.82690 3.97261 4.00765 4.15969 4.22726 4.31083 4.33291 4.38338 4.41717 4.45720 4.50845 4.53859 4.60761 4.63553 4.70260 4.73698 4.79844 4.86044 4.91303 4.95918 4.97143 5.03217 5.07095 5.13407 5.15785 5.24315 5.26996 5.30525 5.33857 5.43398 5.45346 5.50647 5.53320 5.54518 5.92340 6.15252 6.40972 6.58293 6.60019 6.87945 7.28775 7.39598 7.96806 8.76409 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.035984 B = 0.001444 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.933546 B =19383.823944 C =19696.195354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.101 4.101 4 C -0.104 4.104 5 H 0.122 0.878 6 C -0.143 4.143 7 C 0.507 3.493 8 O -0.593 6.593 9 N -0.713 5.713 10 C 0.129 3.871 11 C -0.088 4.088 12 H 0.103 0.897 13 C -0.110 4.110 14 C -0.156 4.156 15 C 0.085 3.915 16 H 0.102 0.898 17 N -0.683 5.683 18 C 0.065 3.935 19 C 0.446 3.554 20 O -0.617 6.617 21 N -0.590 5.590 22 C -0.332 4.332 23 H 0.053 0.947 24 C -0.014 4.014 25 N -0.935 5.935 26 Si 0.966 3.034 27 H -0.256 1.256 28 H -0.275 1.275 29 H -0.230 1.230 30 C -0.106 4.106 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.077 0.923 41 H 0.416 0.584 42 H 0.047 0.953 43 H 0.053 0.947 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.051 0.949 48 H 0.342 0.658 49 H 0.115 0.885 50 H 0.077 0.923 51 H 0.390 0.610 52 H 0.279 0.721 53 H 0.054 0.946 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.136 -36.595 5.931 40.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.139 4.139 4 C -0.125 4.125 5 H 0.140 0.860 6 C -0.200 4.200 7 C 0.295 3.705 8 O -0.473 6.473 9 N -0.366 5.366 10 C 0.005 3.995 11 C -0.107 4.107 12 H 0.121 0.879 13 C -0.148 4.148 14 C -0.195 4.195 15 C -0.025 4.025 16 H 0.120 0.880 17 N -0.313 5.313 18 C -0.068 4.068 19 C 0.234 3.766 20 O -0.502 6.502 21 N -0.232 5.232 22 C -0.461 4.461 23 H 0.071 0.929 24 C -0.213 4.213 25 N -0.576 5.576 26 Si 0.786 3.214 27 H -0.181 1.181 28 H -0.200 1.200 29 H -0.153 1.153 30 C -0.145 4.145 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.254 0.746 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.109 0.891 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.070 0.930 48 H 0.161 0.839 49 H 0.132 0.868 50 H 0.095 0.905 51 H 0.226 0.774 52 H 0.089 0.911 53 H 0.073 0.927 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.999 -35.023 6.647 39.074 hybrid contribution 0.816 0.239 -1.194 1.466 sum -15.183 -34.784 5.452 38.343 Atomic orbital electron populations 1.21792 0.96099 1.02037 1.01453 1.21570 0.95783 0.95129 1.03172 1.21407 0.93101 0.97727 1.01678 1.21378 0.97163 0.91412 1.02530 0.86046 1.21852 1.02142 1.01941 0.94068 1.21395 0.82253 0.92308 0.74574 1.90701 1.56730 1.48367 1.51545 1.45928 1.06917 1.09633 1.74105 1.21360 0.94298 0.83131 1.00734 1.21902 0.92178 0.97417 0.99205 0.87907 1.22126 0.99503 0.98100 0.95040 1.23086 1.00265 0.98199 0.97960 1.22720 0.98505 0.85794 0.95444 0.88036 1.60066 1.02507 1.20106 1.48667 1.21638 0.92555 0.90799 1.01775 1.21098 0.82283 0.92098 0.81123 1.90548 1.46116 1.55663 1.57839 1.42022 1.11690 1.08303 1.61165 1.19022 0.98330 0.85016 1.43748 0.92899 1.26139 1.00281 0.99084 0.95798 1.69809 1.24389 1.18255 1.45140 0.85349 0.77071 0.78556 0.80431 1.18062 1.20020 1.15273 1.22287 0.96478 0.95597 1.00094 0.91663 0.93364 0.93296 0.90446 0.90847 0.93216 0.93237 0.89355 0.93540 0.90440 0.74605 0.93465 0.92869 0.89094 0.91693 0.90680 0.92984 0.83907 0.86752 0.90508 0.77390 0.91127 0.92698 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.91 71.98 0.71 -0.72 16 2 C -0.12 -0.95 5.69 30.59 0.17 -0.77 16 3 C -0.10 -1.32 4.03 30.60 0.12 -1.20 16 4 C -0.10 -1.02 2.73 -11.54 -0.03 -1.06 16 5 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 6 C -0.14 -0.83 8.84 71.98 0.64 -0.19 16 7 C 0.51 8.88 7.15 87.66 0.63 9.50 16 8 O -0.59 -16.83 15.92 -3.03 -0.05 -16.88 16 9 N -0.71 -8.73 5.21 -463.06 -2.41 -11.14 16 10 C 0.13 2.07 4.69 86.38 0.41 2.48 16 11 C -0.09 -1.04 2.97 -10.07 -0.03 -1.07 16 12 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16 13 C -0.11 -1.16 6.15 31.32 0.19 -0.97 16 14 C -0.16 -2.46 6.37 31.67 0.20 -2.26 16 15 C 0.09 1.63 3.18 46.24 0.15 1.77 16 16 H 0.10 1.64 7.90 -2.38 -0.02 1.62 16 17 N -0.68 -19.81 5.99 -488.76 -2.93 -22.74 16 18 C 0.06 1.93 6.02 85.55 0.52 2.44 16 19 C 0.45 20.28 7.82 87.66 0.69 20.96 16 20 O -0.62 -34.92 15.78 -3.07 -0.05 -34.97 16 21 N -0.59 -27.89 5.09 -306.98 -1.56 -29.46 16 22 C -0.33 -19.65 10.16 84.04 0.85 -18.80 16 23 H 0.05 3.75 7.39 -2.91 -0.02 3.72 16 24 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 25 N -0.94 -56.75 13.96 21.66 0.30 -56.45 16 26 Si 0.97 38.49 27.74 68.60 1.90 40.39 16 27 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 28 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 29 H -0.23 -7.61 6.52 99.48 0.65 -6.97 16 30 C -0.11 -1.90 6.06 31.70 0.19 -1.71 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.08 0.43 6.56 -2.39 -0.02 0.42 16 35 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 36 H 0.05 0.85 7.95 -2.39 -0.02 0.83 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 0.24 6.56 -2.38 -0.02 0.23 16 39 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.08 0.19 7.56 -2.39 -0.02 0.17 16 41 H 0.42 2.16 7.75 -92.71 -0.72 1.44 16 42 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.06 0.74 7.60 -2.39 -0.02 0.72 16 46 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.05 1.01 7.82 -2.39 -0.02 0.99 16 48 H 0.34 11.02 8.00 -89.70 -0.72 10.31 16 49 H 0.11 2.85 8.09 -2.39 -0.02 2.83 16 50 H 0.08 1.84 8.13 -2.38 -0.02 1.82 16 51 H 0.39 15.07 5.76 -92.71 -0.53 14.54 16 52 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 53 H 0.05 1.23 7.85 -2.39 -0.02 1.21 16 54 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -84.37 426.79 -0.05 -84.43 By element: Atomic # 1 Polarization: 39.86 SS G_CDS: -1.13 Total: 38.73 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 5.87 Total: 8.08 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -6.60 Total: -119.78 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -0.10 Total: -51.85 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.90 Total: 40.39 kcal Total: -84.37 -0.05 -84.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707103501.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.759 kcal (2) G-P(sol) polarization free energy of solvation -84.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds