Wall clock time and date at job start Sat Apr 11 2020 05:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36934 * 119.99894 * 2 1 4 4 H 1.07998 * 120.00302 * 198.38178 * 3 2 1 5 5 C 1.38815 * 119.99973 * 18.39496 * 3 2 1 6 6 N 1.31616 * 119.99927 * 17.82965 * 5 3 2 7 7 Si 1.86800 * 119.99903 * 197.83066 * 5 3 2 8 8 H 1.48493 * 109.47245 * 89.99779 * 7 5 3 9 9 H 1.48505 * 109.46919 * 209.99922 * 7 5 3 10 10 H 1.48501 * 109.47105 * 329.99536 * 7 5 3 11 11 C 1.46507 * 119.99991 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46828 * 270.00053 * 11 2 1 13 13 C 1.53003 * 109.47021 * 180.02562 * 12 11 2 14 14 N 1.46500 * 109.46961 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99627 * 179.97438 * 14 13 12 16 16 O 1.21280 * 120.00235 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99759 * 180.02562 * 15 14 13 18 18 H 1.09001 * 109.40234 * 300.16917 * 17 15 14 19 19 C 1.53070 * 109.39846 * 180.43248 * 17 15 14 20 20 C 1.53348 * 108.41279 * 190.95498 * 19 17 15 21 21 C 1.52923 * 108.68650 * 67.52674 * 20 19 17 22 22 N 1.45747 * 110.48504 * 309.26342 * 21 20 19 23 23 C 1.46500 * 117.94383 * 199.07122 * 22 21 20 24 24 C 1.53004 * 109.47343 * 239.90939 * 23 22 21 25 25 C 1.53002 * 109.47235 * 359.91083 * 23 22 21 26 26 C 1.53000 * 109.47115 * 119.91366 * 23 22 21 27 27 C 1.33349 * 124.11218 * 19.05695 * 22 21 20 28 28 O 1.21287 * 118.24849 * 177.79555 * 27 22 21 29 29 H 1.08992 * 109.47401 * 274.78010 * 1 2 3 30 30 H 1.08998 * 109.47301 * 34.78350 * 1 2 3 31 31 H 1.09008 * 109.46735 * 154.78197 * 1 2 3 32 32 H 0.97003 * 120.00298 * 180.02562 * 6 5 3 33 33 H 1.09003 * 109.46885 * 29.99898 * 11 2 1 34 34 H 1.08996 * 109.46770 * 150.00047 * 11 2 1 35 35 H 1.09001 * 109.46822 * 299.99900 * 12 11 2 36 36 H 1.08994 * 109.47114 * 59.99712 * 12 11 2 37 37 H 1.09002 * 109.46998 * 300.00377 * 13 12 11 38 38 H 1.09006 * 109.46752 * 59.99781 * 13 12 11 39 39 H 0.96992 * 119.99909 * 359.97438 * 14 13 12 40 40 H 1.08999 * 109.67258 * 310.70084 * 19 17 15 41 41 H 1.09000 * 109.68067 * 71.23817 * 19 17 15 42 42 H 1.08999 * 109.58363 * 307.77859 * 20 19 17 43 43 H 1.09005 * 109.74769 * 187.37647 * 20 19 17 44 44 H 1.09003 * 109.30065 * 188.95143 * 21 20 19 45 45 H 1.08995 * 109.29925 * 69.57536 * 21 20 19 46 46 H 1.08998 * 109.46715 * 53.02180 * 24 23 22 47 47 H 1.09000 * 109.46976 * 173.01649 * 24 23 22 48 48 H 1.08994 * 109.47695 * 293.01847 * 24 23 22 49 49 H 1.09005 * 109.46640 * 60.00167 * 25 23 22 50 50 H 1.09001 * 109.46925 * 179.97438 * 25 23 22 51 51 H 1.08994 * 109.47213 * 299.99645 * 25 23 22 52 52 H 1.09003 * 109.47226 * 60.00053 * 26 23 22 53 53 H 1.09002 * 109.47175 * 179.97438 * 26 23 22 54 54 H 1.08999 * 109.46893 * 299.99927 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1883 1.2098 -0.2949 5 6 1.5088 2.3573 0.3794 6 7 0.3846 2.3012 1.0616 7 14 2.2418 4.0134 -0.0784 8 1 1.7101 4.4427 -1.3968 9 1 1.8779 5.0179 0.9530 10 1 3.7202 3.8961 -0.1553 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 6 3.2181 -3.0358 1.4412 14 7 3.4627 -3.4589 2.8223 15 6 4.1254 -4.6065 3.0680 16 8 4.5195 -5.2887 2.1459 17 6 4.3765 -5.0421 4.4886 18 1 4.9630 -4.2805 5.0026 19 6 5.1514 -6.3622 4.4862 20 6 5.1559 -6.9239 5.9131 21 6 3.7295 -7.3321 6.2835 22 7 2.8002 -6.2428 6.0111 23 6 1.4951 -6.2714 6.6760 24 6 0.3864 -6.3061 5.6221 25 6 1.3993 -7.5179 7.5582 26 6 1.3364 -5.0202 7.5421 27 6 3.0635 -5.2217 5.1950 28 8 2.1963 -4.3933 5.0137 29 1 -0.3634 0.0856 1.0240 30 1 -0.3634 0.8440 -0.5862 31 1 -0.3633 -0.9298 -0.4379 32 1 -0.0635 3.1197 1.3264 33 1 1.6084 -2.0282 -0.5147 34 1 3.1499 -1.1382 -0.5143 35 1 3.0416 -0.9516 1.9559 36 1 1.5001 -1.8415 1.9555 37 1 2.6294 -3.7954 0.9269 38 1 4.1705 -2.9047 0.9275 39 1 3.1478 -2.9132 3.5597 40 1 4.6671 -7.0707 3.8142 41 1 6.1758 -6.1859 4.1582 42 1 5.5090 -6.1596 6.6054 43 1 5.8103 -7.7941 5.9643 44 1 3.6902 -7.5826 7.3436 45 1 3.4416 -8.2059 5.6990 46 1 0.5696 -7.1271 4.9291 47 1 -0.5762 -6.4522 6.1122 48 1 0.3760 -5.3637 5.0745 49 1 2.1891 -7.4931 8.3090 50 1 0.4284 -7.5389 8.0532 51 1 1.5123 -8.4092 6.9412 52 1 1.4046 -4.1322 6.9136 53 1 0.3652 -5.0412 8.0365 54 1 2.1262 -4.9955 8.2929 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707399507.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:19 Heat of formation + Delta-G solvation = -75.603222 kcal Electronic energy + Delta-G solvation = -31041.456733 eV Core-core repulsion = 27012.934734 eV Total energy + Delta-G solvation = -4028.521998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.33532 -40.50668 -38.03711 -37.90340 -36.91983 -36.10068 -33.78346 -32.74812 -31.73971 -30.81996 -28.66954 -28.23642 -27.97550 -27.07667 -25.45774 -23.93955 -23.47575 -22.21513 -21.87099 -21.01750 -19.25772 -18.77719 -18.48277 -17.78660 -17.39719 -17.06354 -16.63127 -16.55934 -16.27167 -15.85852 -15.50361 -15.29150 -15.13693 -14.81903 -14.67507 -14.55515 -14.47009 -14.41442 -14.21036 -13.35342 -13.26342 -13.18657 -13.08603 -13.02877 -12.85050 -12.79598 -12.73955 -12.51846 -12.49558 -12.41476 -12.31147 -12.12596 -12.03066 -12.00723 -11.85806 -11.83980 -11.76937 -11.51110 -11.05745 -10.63013 -10.44650 -10.08239 -9.64032 -8.86613 -7.84228 -5.27564 1.25734 1.45941 1.47926 1.56420 1.58492 2.00231 2.25038 2.51765 3.29052 3.39537 3.47941 3.63068 3.74820 3.81074 3.94818 3.98150 4.07168 4.11192 4.12808 4.24912 4.28518 4.44376 4.46886 4.58120 4.62360 4.66345 4.69408 4.75673 4.81076 4.83045 4.83985 4.85969 4.86792 4.95532 5.02054 5.04752 5.08506 5.23118 5.25286 5.27750 5.31605 5.32021 5.38379 5.41293 5.46562 5.62190 5.67917 5.69049 6.30345 6.43734 6.49657 7.08234 7.13262 7.15895 7.86377 8.29555 9.20417 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.002389 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.367816 B =11719.990769 C =12544.443957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.620 5.620 3 C -0.262 4.262 4 H 0.074 0.926 5 C -0.058 4.058 6 N -0.938 5.938 7 Si 0.969 3.031 8 H -0.287 1.287 9 H -0.296 1.296 10 H -0.268 1.268 11 C 0.152 3.848 12 C -0.128 4.128 13 C 0.133 3.867 14 N -0.709 5.709 15 C 0.523 3.477 16 O -0.576 6.576 17 C -0.122 4.122 18 H 0.147 0.853 19 C -0.101 4.101 20 C -0.127 4.127 21 C 0.097 3.903 22 N -0.585 5.585 23 C 0.160 3.840 24 C -0.161 4.161 25 C -0.148 4.148 26 C -0.160 4.160 27 C 0.519 3.481 28 O -0.565 6.565 29 H 0.001 0.999 30 H 0.019 0.981 31 H 0.031 0.969 32 H 0.247 0.753 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.411 0.589 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.073 0.927 46 H 0.047 0.953 47 H 0.074 0.926 48 H 0.049 0.951 49 H 0.081 0.919 50 H 0.079 0.921 51 H 0.071 0.929 52 H 0.050 0.950 53 H 0.072 0.928 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.262 -25.451 17.536 31.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.343 5.343 3 C -0.392 4.392 4 H 0.092 0.908 5 C -0.252 4.252 6 N -0.585 5.585 7 Si 0.797 3.203 8 H -0.213 1.213 9 H -0.223 1.223 10 H -0.192 1.192 11 C 0.026 3.974 12 C -0.168 4.168 13 C 0.009 3.991 14 N -0.359 5.359 15 C 0.308 3.692 16 O -0.456 6.456 17 C -0.146 4.146 18 H 0.164 0.836 19 C -0.139 4.139 20 C -0.164 4.164 21 C -0.025 4.025 22 N -0.317 5.317 23 C 0.077 3.923 24 C -0.219 4.219 25 C -0.205 4.205 26 C -0.218 4.218 27 C 0.307 3.693 28 O -0.446 6.446 29 H 0.019 0.981 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.247 0.753 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.135 0.865 44 H 0.127 0.873 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.093 0.907 48 H 0.068 0.932 49 H 0.100 0.900 50 H 0.098 0.902 51 H 0.090 0.910 52 H 0.069 0.931 53 H 0.091 0.909 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.996 -25.390 16.821 31.488 hybrid contribution -0.317 1.720 -0.062 1.750 sum 7.679 -23.670 16.759 30.001 Atomic orbital electron populations 1.20552 0.82789 0.96109 0.97517 1.44288 1.02229 1.01890 1.85879 1.19576 0.96338 0.85750 1.37505 0.90820 1.25721 0.98757 1.01596 0.99156 1.70283 1.20810 1.26902 1.40540 0.85237 0.78354 0.79665 0.77040 1.21348 1.22273 1.19238 1.20887 0.96173 0.86796 0.93563 1.22186 0.98971 0.94780 1.00907 1.21228 0.99731 0.95479 0.82697 1.46192 1.56243 1.23883 1.09622 1.20417 0.77237 0.80517 0.90990 1.90668 1.53124 1.54907 1.46890 1.21546 0.96656 1.03620 0.92754 0.83582 1.21513 1.00762 0.92816 0.98774 1.21945 0.96064 1.03680 0.94733 1.21879 0.88408 0.88558 1.03622 1.47535 1.17035 1.23201 1.43970 1.20590 0.81916 0.97449 0.92376 1.22201 0.98673 1.01860 0.99161 1.22159 1.04126 0.94997 0.99218 1.22170 1.02536 0.97859 0.99193 1.19653 0.88549 0.81696 0.79447 1.90687 1.46723 1.43405 1.63742 0.98118 0.96218 0.95081 0.94353 0.92328 0.92752 0.93217 0.93681 0.92265 0.91418 0.75258 0.91812 0.89429 0.89845 0.86531 0.87270 0.90878 0.93412 0.90674 0.93177 0.90000 0.90168 0.91033 0.93078 0.90925 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.14 9.03 127.77 1.15 10.29 16 2 N -0.62 -32.43 2.93 -726.92 -2.13 -34.56 16 3 C -0.26 -14.79 9.68 84.03 0.81 -13.98 16 4 H 0.07 4.02 7.87 -2.91 -0.02 4.00 16 5 C -0.06 -3.32 5.00 84.86 0.42 -2.89 16 6 N -0.94 -57.26 10.73 21.65 0.23 -57.03 16 7 Si 0.97 46.24 29.59 68.60 2.03 48.27 16 8 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 9 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 C 0.15 6.39 5.71 86.38 0.49 6.88 16 12 C -0.13 -4.97 5.65 30.60 0.17 -4.80 16 13 C 0.13 4.43 5.67 86.38 0.49 4.92 16 14 N -0.71 -22.12 5.04 -463.05 -2.33 -24.46 16 15 C 0.52 15.39 7.06 87.66 0.62 16.01 16 16 O -0.58 -20.16 15.79 -3.03 -0.05 -20.21 16 17 C -0.12 -2.50 2.78 -12.43 -0.03 -2.54 16 18 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 19 C -0.10 -1.51 4.78 30.73 0.15 -1.36 16 20 C -0.13 -0.89 6.02 30.69 0.18 -0.71 16 21 C 0.10 0.80 5.24 86.50 0.45 1.25 16 22 N -0.59 -9.45 2.79 -779.58 -2.17 -11.62 16 23 C 0.16 2.53 1.03 3.61 0.00 2.53 16 24 C -0.16 -3.29 8.24 71.98 0.59 -2.70 16 25 C -0.15 -1.19 7.31 71.98 0.53 -0.66 16 26 C -0.16 -2.80 8.36 71.98 0.60 -2.20 16 27 C 0.52 11.75 6.45 87.71 0.57 12.31 16 28 O -0.57 -16.81 10.32 -3.05 -0.03 -16.84 16 29 H 0.00 0.03 7.46 -2.39 -0.02 0.01 16 30 H 0.02 1.08 7.13 -2.39 -0.02 1.06 16 31 H 0.03 1.38 7.84 -2.38 -0.02 1.36 16 32 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.06 2.22 7.86 -2.39 -0.02 2.20 16 34 H 0.05 2.18 8.03 -2.39 -0.02 2.16 16 35 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.41 12.76 7.14 -92.71 -0.66 12.10 16 40 H 0.06 1.21 7.72 -2.39 -0.02 1.19 16 41 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.08 0.48 8.12 -2.39 -0.02 0.47 16 43 H 0.12 0.27 8.14 -2.38 -0.02 0.25 16 44 H 0.11 0.37 6.01 -2.39 -0.01 0.36 16 45 H 0.07 0.56 8.04 -2.39 -0.02 0.54 16 46 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.05 1.41 6.06 -2.39 -0.01 1.39 16 49 H 0.08 0.39 6.74 -2.38 -0.02 0.37 16 50 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.07 0.49 7.63 -2.39 -0.02 0.47 16 52 H 0.05 1.27 6.01 -2.39 -0.01 1.25 16 53 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 54 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -75.18 412.19 2.96 -72.23 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.21 Total: 21.85 kcal Atomic # 6 Polarization: 15.17 SS G_CDS: 7.21 Total: 22.37 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -6.40 Total: -127.67 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -0.08 Total: -37.05 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -75.18 2.96 -72.23 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707399507.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.377 kcal (2) G-P(sol) polarization free energy of solvation -75.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds