Wall clock time and date at job start Sat Apr 11 2020 05:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47473 * 2 1 4 4 C 1.52999 * 109.47430 * 184.46776 * 3 2 1 5 5 H 1.08999 * 109.46954 * 55.56420 * 4 3 2 6 6 C 1.52996 * 109.47094 * 295.56558 * 4 3 2 7 7 C 1.53007 * 109.47106 * 302.43297 * 6 4 3 8 8 C 1.50693 * 109.47025 * 175.56255 * 4 3 2 9 9 O 1.21280 * 120.00391 * 25.46405 * 8 4 3 10 10 N 1.34779 * 120.00071 * 205.46035 * 8 4 3 11 11 C 1.47319 * 125.61494 * 354.74615 * 10 8 4 12 12 C 1.54321 * 107.12111 * 178.89026 * 11 10 8 13 13 C 1.55156 * 103.10125 * 338.02560 * 12 11 10 14 14 H 1.09005 * 111.00190 * 277.33569 * 13 12 11 15 15 C 1.53003 * 111.00537 * 153.52667 * 13 12 11 16 16 N 1.46900 * 109.47183 * 66.45183 * 15 13 12 17 17 C 1.46895 * 111.00100 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.47330 * 180.02562 * 17 16 15 19 19 O 1.21285 * 119.99833 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00127 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99995 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00156 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99851 * 179.97438 * 21 20 18 24 24 N 1.31415 * 120.00419 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99861 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47002 * 90.00159 * 25 23 21 27 27 H 1.48497 * 109.47500 * 209.99995 * 25 23 21 28 28 H 1.48497 * 109.47257 * 330.00311 * 25 23 21 29 29 C 1.47421 * 125.64803 * 174.97019 * 10 8 4 30 30 H 1.09003 * 109.46784 * 300.00287 * 1 2 3 31 31 H 1.09008 * 109.46880 * 59.99687 * 1 2 3 32 32 H 1.08996 * 109.47414 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46950 * 240.00238 * 2 1 3 34 34 H 1.09000 * 109.47512 * 120.00322 * 2 1 3 35 35 H 1.08998 * 109.46720 * 64.46615 * 3 2 1 36 36 H 1.09001 * 109.47141 * 304.46924 * 3 2 1 37 37 H 1.08996 * 109.47034 * 62.43079 * 6 4 3 38 38 H 1.08997 * 109.46908 * 182.43566 * 6 4 3 39 39 H 1.08997 * 109.46993 * 185.10197 * 7 6 4 40 40 H 1.08995 * 109.46692 * 305.10466 * 7 6 4 41 41 H 1.08995 * 109.46820 * 65.10558 * 7 6 4 42 42 H 1.09005 * 109.84561 * 59.58099 * 11 10 8 43 43 H 1.08998 * 110.06149 * 298.32077 * 11 10 8 44 44 H 1.08999 * 110.71814 * 219.57670 * 12 11 10 45 45 H 1.08994 * 110.71737 * 96.47703 * 12 11 10 46 46 H 1.08995 * 109.47570 * 186.45274 * 15 13 12 47 47 H 1.08997 * 109.46870 * 306.45520 * 15 13 12 48 48 H 1.00904 * 111.00168 * 303.95460 * 16 15 13 49 49 H 1.09003 * 109.46920 * 299.99870 * 17 16 15 50 50 H 1.09002 * 109.47387 * 59.99723 * 17 16 15 51 51 H 0.97004 * 119.99871 * 359.97438 * 20 18 17 52 52 H 0.96994 * 120.00185 * 179.97438 * 24 23 21 53 53 H 1.09001 * 110.36638 * 85.25849 * 29 10 8 54 54 H 1.08994 * 110.46753 * 322.97700 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5659 1.4439 -0.1124 5 1 3.8654 0.8854 -0.9991 6 6 4.1695 0.7883 1.1313 7 6 3.6999 1.5361 2.3808 8 6 4.0601 2.8633 -0.2221 9 8 3.3990 3.7725 0.2330 10 7 5.2370 3.1223 -0.8258 11 6 6.1872 2.1120 -1.3222 12 6 7.3696 2.8736 -1.9573 13 6 6.7585 4.2616 -2.2850 14 1 6.2170 4.2367 -3.2307 15 6 7.8381 5.3457 -2.3031 16 7 8.7560 5.1040 -3.4242 17 6 9.8086 6.1275 -3.4727 18 6 10.7284 5.8474 -4.6332 19 8 10.5272 4.8893 -5.3490 20 7 11.7753 6.6611 -4.8749 21 6 12.6124 6.4061 -5.9303 22 1 12.4332 5.5529 -6.5678 23 6 13.6913 7.2453 -6.1799 24 7 13.9098 8.2832 -5.4040 25 14 14.8323 6.8973 -7.6174 26 1 14.3291 7.5940 -8.8286 27 1 16.1970 7.3867 -7.2961 28 1 14.8777 5.4348 -7.8706 29 6 5.7880 4.4630 -1.0945 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.7435 1.9326 0.9273 36 1 1.6128 1.9789 -0.8472 37 1 3.8464 -0.2511 1.1871 38 1 5.2571 0.8281 1.0714 39 1 4.2001 1.1270 3.2586 40 1 3.9433 2.5941 2.2839 41 1 2.6216 1.4198 2.4900 42 1 5.7037 1.4861 -2.0723 43 1 6.5436 1.4963 -0.4964 44 1 7.7051 2.3756 -2.8670 45 1 8.1909 2.9717 -1.2476 46 1 7.3698 6.3229 -2.4211 47 1 8.3943 5.3202 -1.3661 48 1 9.1543 4.1784 -3.3724 49 1 9.3543 7.1103 -3.5987 50 1 10.3785 6.1070 -2.5438 51 1 11.9365 7.4273 -4.3022 52 1 14.6632 8.8688 -5.5780 53 1 6.3283 4.8327 -0.2230 54 1 4.9912 5.1549 -1.3675 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713357998.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:46 Heat of formation + Delta-G solvation = -120.293450 kcal Electronic energy + Delta-G solvation = -29287.056460 eV Core-core repulsion = 25256.596548 eV Total energy + Delta-G solvation = -4030.459912 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.44174 -40.17093 -39.19498 -37.26473 -36.60774 -35.80061 -33.85927 -33.28930 -32.73872 -30.50388 -29.89153 -28.65353 -26.84472 -25.85426 -24.64881 -24.13492 -23.29764 -21.40975 -21.30886 -20.94428 -19.89222 -19.60177 -18.14959 -18.04486 -17.33188 -16.85092 -16.77442 -16.43687 -16.17316 -16.06372 -15.84343 -15.22808 -15.11231 -14.91579 -14.72650 -14.45442 -14.30866 -14.08241 -13.89202 -13.73319 -13.54131 -13.44409 -13.34724 -13.23201 -12.97363 -12.94969 -12.72522 -12.69176 -12.41085 -12.20034 -12.12119 -12.06002 -11.92625 -11.84968 -11.68477 -11.64067 -11.52327 -11.49414 -11.31532 -10.66664 -10.33741 -10.00660 -9.67116 -9.31583 -8.45871 -5.94672 1.38983 1.42918 1.55456 1.60196 1.94943 2.06403 2.30039 2.90097 3.21670 3.36828 3.52853 3.60713 3.72119 3.80790 3.86780 4.00796 4.19910 4.25253 4.29031 4.32415 4.33118 4.36069 4.38374 4.41523 4.49117 4.56915 4.60708 4.65065 4.69596 4.73684 4.77088 4.79205 4.90318 4.91711 4.94865 4.99034 5.07128 5.14388 5.15600 5.18033 5.24036 5.27760 5.35731 5.39217 5.41405 5.41862 5.55225 5.88820 6.10390 6.44276 6.50773 6.60914 7.13431 7.13772 7.57338 8.12324 8.71469 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.032822 B = 0.001521 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.879674 B =18406.986759 C =18654.100462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.101 4.101 4 C -0.099 4.099 5 H 0.110 0.890 6 C -0.108 4.108 7 C -0.156 4.156 8 C 0.527 3.473 9 O -0.584 6.584 10 N -0.621 5.621 11 C 0.101 3.899 12 C -0.129 4.129 13 C -0.088 4.088 14 H 0.083 0.917 15 C 0.074 3.926 16 N -0.681 5.681 17 C 0.064 3.936 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.574 5.574 21 C -0.335 4.335 22 H 0.080 0.920 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.272 1.272 29 C 0.113 3.887 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.031 0.969 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.045 0.955 48 H 0.347 0.653 49 H 0.102 0.898 50 H 0.068 0.932 51 H 0.396 0.604 52 H 0.277 0.723 53 H 0.070 0.930 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.257 -15.952 15.827 30.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.139 4.139 4 C -0.120 4.120 5 H 0.128 0.872 6 C -0.146 4.146 7 C -0.214 4.214 8 C 0.318 3.682 9 O -0.464 6.464 10 N -0.354 5.354 11 C -0.021 4.021 12 C -0.167 4.167 13 C -0.107 4.107 14 H 0.102 0.898 15 C -0.055 4.055 16 N -0.314 5.314 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.098 0.902 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.197 1.197 29 C -0.010 4.010 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.096 0.904 47 H 0.064 0.936 48 H 0.166 0.834 49 H 0.120 0.880 50 H 0.086 0.914 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.088 0.912 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.053 -15.663 15.173 30.311 hybrid contribution 1.276 0.685 0.180 1.460 sum -19.777 -14.978 15.353 29.175 Atomic orbital electron populations 1.21782 0.95817 1.02074 1.01531 1.21543 0.95929 0.95025 1.03072 1.21470 0.92311 0.98089 1.02075 1.21434 0.97453 0.91047 1.02050 0.87248 1.21496 1.00641 1.00587 0.91831 1.21850 1.01870 0.99478 0.98165 1.20979 0.78984 0.92311 0.75932 1.90670 1.57509 1.49031 1.49189 1.48732 1.19477 1.08542 1.58670 1.22306 0.89249 0.91036 0.99474 1.22735 0.97212 0.94816 1.01909 1.22204 0.95444 0.95194 0.97896 0.89816 1.21873 0.93085 0.99069 0.91488 1.60021 1.19570 1.05863 1.45910 1.21531 0.92301 0.97830 0.95154 1.20879 0.83327 0.84510 0.88751 1.90484 1.75014 1.32576 1.52801 1.41942 1.24558 1.26521 1.28069 1.19683 1.07115 1.11990 1.07641 0.90232 1.26031 0.99001 0.95018 1.01160 1.69671 1.31232 1.15617 1.39628 0.84929 0.77280 0.78505 0.77635 1.19774 1.19581 1.19655 1.22131 0.96360 0.85071 0.97461 0.93112 0.93296 0.91688 0.91022 0.90569 0.91995 0.93397 0.88210 0.91001 0.91596 0.95029 0.92148 0.89714 0.89308 0.89099 0.89948 0.90431 0.93640 0.83384 0.87997 0.91430 0.76991 0.91329 0.91158 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 71.98 0.71 -0.83 16 2 C -0.12 -1.13 5.56 30.59 0.17 -0.96 16 3 C -0.10 -1.49 3.87 30.59 0.12 -1.37 16 4 C -0.10 -1.35 1.98 -11.54 -0.02 -1.37 16 5 H 0.11 1.08 7.26 -2.39 -0.02 1.06 16 6 C -0.11 -1.13 5.38 30.60 0.16 -0.96 16 7 C -0.16 -2.20 9.19 71.98 0.66 -1.54 16 8 C 0.53 11.18 6.06 87.65 0.53 11.71 16 9 O -0.58 -17.27 15.71 -3.03 -0.05 -17.32 16 10 N -0.62 -11.40 3.33 -811.05 -2.70 -14.10 16 11 C 0.10 1.26 6.34 86.67 0.55 1.80 16 12 C -0.13 -1.89 5.62 31.78 0.18 -1.71 16 13 C -0.09 -1.62 3.29 -9.40 -0.03 -1.65 16 14 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 15 C 0.07 1.55 5.19 86.30 0.45 2.00 16 16 N -0.68 -19.87 6.13 -517.94 -3.17 -23.05 16 17 C 0.06 2.11 6.17 85.56 0.53 2.64 16 18 C 0.44 20.41 7.82 87.66 0.69 21.10 16 19 O -0.62 -33.78 15.78 -3.04 -0.05 -33.83 16 20 N -0.57 -29.10 5.29 -306.99 -1.62 -30.73 16 21 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 24 N -0.92 -49.37 13.05 21.66 0.28 -49.08 16 25 Si 0.99 42.56 29.55 68.60 2.03 44.59 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 27 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 28 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 29 C 0.11 2.20 6.36 86.86 0.55 2.75 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 0.57 6.83 -2.39 -0.02 0.56 16 35 H 0.06 1.11 6.13 -2.39 -0.01 1.09 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.10 0.63 6.77 -2.39 -0.02 0.61 16 38 H 0.07 0.67 7.14 -2.39 -0.02 0.66 16 39 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.03 0.63 6.59 -2.39 -0.02 0.61 16 41 H 0.06 0.84 6.58 -2.39 -0.02 0.82 16 42 H 0.08 0.85 7.69 -2.38 -0.02 0.83 16 43 H 0.09 0.80 7.15 -2.39 -0.02 0.79 16 44 H 0.09 1.38 8.12 -2.39 -0.02 1.36 16 45 H 0.08 1.14 8.01 -2.39 -0.02 1.12 16 46 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.05 0.84 8.11 -2.39 -0.02 0.82 16 48 H 0.35 10.32 7.65 -89.69 -0.69 9.64 16 49 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 50 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 51 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 52 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 53 H 0.07 1.32 8.04 -2.39 -0.02 1.31 16 54 H 0.06 1.43 8.09 -2.39 -0.02 1.41 16 Total: -1.00 -71.88 422.99 0.71 -71.16 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -0.53 Total: 38.99 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 6.53 Total: 13.35 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -7.22 Total: -116.95 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: -0.10 Total: -51.14 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -71.88 0.71 -71.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713357998.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.129 kcal (2) G-P(sol) polarization free energy of solvation -71.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds