Wall clock time and date at job start Sat Apr 11 2020 05:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46915 * 2 1 4 4 C 1.52999 * 109.46664 * 175.30442 * 3 2 1 5 5 H 1.09005 * 109.47358 * 55.81485 * 4 3 2 6 6 C 1.52997 * 109.47208 * 295.81307 * 4 3 2 7 7 C 1.52998 * 109.47442 * 304.21752 * 6 4 3 8 8 C 1.50698 * 109.47179 * 175.81304 * 4 3 2 9 9 O 1.21290 * 119.99939 * 0.02562 * 8 4 3 10 10 N 1.34774 * 120.00197 * 179.97438 * 8 4 3 11 11 C 1.47425 * 125.65021 * 4.84118 * 10 8 4 12 12 C 1.55132 * 104.72301 * 155.81304 * 11 10 8 13 13 C 1.55163 * 101.48373 * 37.30113 * 12 11 10 14 14 C 1.47027 * 125.64807 * 185.14784 * 10 8 4 15 15 H 1.08996 * 109.88215 * 300.44382 * 14 10 8 16 16 C 1.53005 * 109.87991 * 61.60878 * 14 10 8 17 17 N 1.46899 * 109.46651 * 184.83138 * 16 14 10 18 18 C 1.46906 * 111.00001 * 185.02970 * 17 16 14 19 19 C 1.50697 * 109.47399 * 180.02562 * 18 17 16 20 20 O 1.21291 * 120.00230 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00106 * 180.02562 * 19 18 17 22 22 C 1.37099 * 120.00332 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99755 * 0.02562 * 22 21 19 24 24 C 1.38943 * 120.00214 * 180.02562 * 22 21 19 25 25 N 1.31409 * 119.99906 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99979 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46720 * 60.00241 * 26 24 22 28 28 H 1.48503 * 109.46848 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47155 * 300.00064 * 26 24 22 30 30 H 1.09002 * 109.46957 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47027 * 300.00119 * 1 2 3 32 32 H 1.08997 * 109.47119 * 60.00043 * 1 2 3 33 33 H 1.08993 * 109.46851 * 239.99870 * 2 1 3 34 34 H 1.08999 * 109.46736 * 119.99587 * 2 1 3 35 35 H 1.08997 * 109.47197 * 55.31222 * 3 2 1 36 36 H 1.08997 * 109.47126 * 295.30161 * 3 2 1 37 37 H 1.09011 * 109.47144 * 184.21525 * 6 4 3 38 38 H 1.08997 * 109.47255 * 64.22148 * 6 4 3 39 39 H 1.08994 * 109.47281 * 295.56478 * 7 6 4 40 40 H 1.09002 * 109.46811 * 55.56683 * 7 6 4 41 41 H 1.09000 * 109.47106 * 175.56678 * 7 6 4 42 42 H 1.08999 * 110.36722 * 274.74776 * 11 10 8 43 43 H 1.09002 * 110.36519 * 37.07272 * 11 10 8 44 44 H 1.08997 * 111.19772 * 279.19311 * 12 11 10 45 45 H 1.09002 * 110.93844 * 155.29108 * 12 11 10 46 46 H 1.09005 * 110.71741 * 205.96681 * 13 12 11 47 47 H 1.08990 * 110.72149 * 82.69308 * 13 12 11 48 48 H 1.08989 * 109.47144 * 304.82916 * 16 14 10 49 49 H 1.09001 * 109.47139 * 64.83617 * 16 14 10 50 50 H 1.00904 * 111.00148 * 61.08407 * 17 16 14 51 51 H 1.09003 * 109.47080 * 300.00727 * 18 17 16 52 52 H 1.09005 * 109.46504 * 59.99924 * 18 17 16 53 53 H 0.97003 * 119.99829 * 0.02562 * 21 19 18 54 54 H 0.97007 * 119.99663 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5654 1.4441 0.1181 5 1 3.9927 0.8440 -0.6854 6 6 3.9730 0.8521 1.4688 7 6 3.2886 1.6305 2.5942 8 6 4.0758 2.8582 0.0148 9 8 3.2962 3.7747 -0.1377 10 7 5.3986 3.1047 0.0930 11 6 6.4592 2.0842 0.1770 12 6 7.7279 2.7881 -0.3723 13 6 7.5495 4.2252 0.1849 14 6 6.0223 4.4359 0.1150 15 1 5.7645 4.9811 -0.7929 16 6 5.5474 5.2127 1.3447 17 7 6.0836 6.5795 1.2974 18 6 5.7472 7.3196 2.5210 19 6 6.3120 8.7141 2.4360 20 8 6.9333 9.0580 1.4527 21 7 6.1268 9.5793 3.4527 22 6 6.6411 10.8479 3.3756 23 1 7.1943 11.1540 2.5000 24 6 6.4506 11.7396 4.4239 25 7 5.7780 11.3670 5.4895 26 14 7.1520 13.4678 4.3192 27 1 6.5727 14.1667 3.1439 28 1 6.8122 14.2157 5.5563 29 1 8.6281 13.3950 4.1738 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6097 1.9800 0.8450 36 1 1.7470 1.9314 -0.9291 37 1 5.0547 0.9217 1.5845 38 1 3.6695 -0.1938 1.5136 39 1 3.6520 2.6581 2.5985 40 1 2.2103 1.6271 2.4347 41 1 3.5158 1.1608 3.5512 42 1 6.6103 1.7784 1.2122 43 1 6.2065 1.2226 -0.4410 44 1 7.7369 2.7900 -1.4622 45 1 8.6321 2.3253 0.0230 46 1 8.0679 4.9495 -0.4434 47 1 7.9004 4.2857 1.2150 48 1 4.4582 5.2498 1.3526 49 1 5.9006 4.7149 2.2477 50 1 5.7561 7.0683 0.4777 51 1 4.6636 7.3726 2.6273 52 1 6.1722 6.8070 3.3841 53 1 5.6303 9.3043 4.2393 54 1 5.6453 11.9895 6.2216 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714353527.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:13 Heat of formation + Delta-G solvation = -113.994111 kcal Electronic energy + Delta-G solvation = -30359.688379 eV Core-core repulsion = 26329.501627 eV Total energy + Delta-G solvation = -4030.186752 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.59275 -40.20023 -39.00421 -37.31757 -36.64011 -35.81138 -33.92127 -33.30542 -32.34418 -31.34973 -29.72683 -28.30797 -26.43878 -26.24243 -24.93699 -23.94508 -23.05528 -22.03250 -21.28826 -20.84104 -19.98127 -19.54616 -18.04085 -17.95555 -17.15938 -16.95850 -16.81217 -16.57166 -16.47678 -16.00114 -15.48544 -15.28982 -15.11616 -14.93258 -14.76185 -14.55313 -14.28021 -14.05401 -14.02685 -13.69858 -13.61791 -13.49026 -13.25070 -13.20128 -12.87438 -12.85791 -12.73414 -12.64437 -12.45564 -12.21745 -12.13418 -12.00505 -11.87851 -11.83521 -11.79194 -11.63192 -11.52700 -11.43547 -11.22616 -10.67803 -10.41599 -10.05114 -9.69325 -9.43609 -8.48677 -5.98147 1.38595 1.40256 1.51801 1.62051 1.92374 2.00463 2.28004 2.90555 3.17669 3.39343 3.52787 3.67291 3.74277 3.81601 3.86766 3.95146 4.18787 4.22356 4.24600 4.26642 4.31653 4.33501 4.37600 4.43336 4.47647 4.48636 4.62469 4.64846 4.68382 4.74585 4.78208 4.86088 4.92161 4.99230 5.04708 5.05111 5.10176 5.16825 5.17843 5.21565 5.26247 5.33693 5.38197 5.39284 5.42919 5.44596 5.59039 5.78206 6.01746 6.21631 6.56247 6.57180 7.08992 7.18049 7.51584 8.06468 8.68569 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.002092 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.377624 B =13379.431242 C =14409.115350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.102 4.102 4 C -0.096 4.096 5 H 0.120 0.880 6 C -0.115 4.115 7 C -0.159 4.159 8 C 0.524 3.476 9 O -0.589 6.589 10 N -0.612 5.612 11 C 0.094 3.906 12 C -0.127 4.127 13 C -0.111 4.111 14 C 0.141 3.859 15 H 0.051 0.949 16 C 0.063 3.937 17 N -0.666 5.666 18 C 0.067 3.933 19 C 0.439 3.561 20 O -0.620 6.620 21 N -0.572 5.572 22 C -0.336 4.336 23 H 0.080 0.920 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.996 3.004 27 H -0.272 1.272 28 H -0.269 1.269 29 H -0.270 1.270 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.024 0.976 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.108 0.892 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.017 0.983 49 H 0.080 0.920 50 H 0.341 0.659 51 H 0.054 0.946 52 H 0.107 0.893 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.929 -30.914 -7.688 31.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.140 4.140 4 C -0.117 4.117 5 H 0.138 0.862 6 C -0.152 4.152 7 C -0.216 4.216 8 C 0.315 3.685 9 O -0.469 6.469 10 N -0.346 5.346 11 C -0.027 4.027 12 C -0.164 4.164 13 C -0.149 4.149 14 C 0.037 3.963 15 H 0.069 0.931 16 C -0.067 4.067 17 N -0.298 5.298 18 C -0.066 4.066 19 C 0.227 3.773 20 O -0.507 6.507 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.098 0.902 24 C -0.214 4.214 25 N -0.561 5.561 26 Si 0.819 3.181 27 H -0.197 1.197 28 H -0.194 1.194 29 H -0.195 1.195 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.120 0.880 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.121 0.879 44 H 0.096 0.904 45 H 0.126 0.874 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.035 0.965 49 H 0.098 0.902 50 H 0.159 0.841 51 H 0.072 0.928 52 H 0.125 0.875 53 H 0.230 0.770 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.441 -30.318 -8.015 31.454 hybrid contribution -1.243 1.731 0.308 2.153 sum -3.684 -28.587 -7.707 29.836 Atomic orbital electron populations 1.21790 0.96079 1.02069 1.01357 1.21555 0.95757 0.94897 1.03256 1.21469 0.92910 0.98038 1.01628 1.21408 0.97444 0.91079 1.01759 0.86234 1.21679 1.01818 1.00829 0.90837 1.21884 1.01112 0.99130 0.99496 1.21142 0.80345 0.92459 0.74555 1.90698 1.56320 1.48594 1.51285 1.48682 1.05743 1.07780 1.72367 1.22781 0.86006 0.91256 1.02658 1.22894 0.98170 0.93982 1.01400 1.22510 0.91449 0.98139 1.02793 1.21368 0.94635 0.84048 0.96263 0.93067 1.22197 0.96336 0.88949 0.99268 1.60053 1.63586 1.02429 1.03726 1.21511 0.98579 0.91261 0.95260 1.20706 0.84671 0.87971 0.83977 1.90482 1.46614 1.79618 1.33935 1.41922 1.49318 1.11651 1.17999 1.19657 1.33264 0.89175 1.04419 0.90169 1.26102 0.97064 1.03903 0.94349 1.69677 1.40751 1.38337 1.07354 0.84947 0.78639 0.76576 0.77909 1.19743 1.19387 1.19497 0.91489 0.93374 0.93514 0.90842 0.90214 0.92662 0.93536 0.89731 0.88029 0.95665 0.92508 0.91179 0.89385 0.87892 0.90356 0.87356 0.90679 0.90355 0.96519 0.90153 0.84142 0.92794 0.87522 0.77032 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.91 71.98 0.71 -1.10 16 2 C -0.12 -1.23 5.78 30.60 0.18 -1.06 16 3 C -0.10 -1.71 3.70 30.59 0.11 -1.60 16 4 C -0.10 -1.38 1.90 -11.54 -0.02 -1.40 16 5 H 0.12 1.11 7.77 -2.38 -0.02 1.09 16 6 C -0.11 -1.17 5.23 30.59 0.16 -1.01 16 7 C -0.16 -2.43 9.32 71.98 0.67 -1.76 16 8 C 0.52 12.22 5.94 87.66 0.52 12.75 16 9 O -0.59 -19.87 15.11 -3.06 -0.05 -19.92 16 10 N -0.61 -12.11 3.05 -787.59 -2.40 -14.51 16 11 C 0.09 0.99 5.31 86.93 0.46 1.46 16 12 C -0.13 -1.41 7.10 32.07 0.23 -1.19 16 13 C -0.11 -2.15 6.28 31.79 0.20 -1.95 16 14 C 0.14 3.47 3.07 45.34 0.14 3.61 16 15 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 16 C 0.06 1.82 5.08 86.31 0.44 2.26 16 17 N -0.67 -23.44 5.90 -517.92 -3.05 -26.49 16 18 C 0.07 2.53 6.16 85.55 0.53 3.05 16 19 C 0.44 22.04 7.82 87.66 0.69 22.72 16 20 O -0.62 -35.64 15.78 -3.07 -0.05 -35.68 16 21 N -0.57 -30.61 5.29 -306.99 -1.62 -32.23 16 22 C -0.34 -19.61 9.68 84.04 0.81 -18.80 16 23 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 24 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 25 N -0.92 -50.85 13.05 21.66 0.28 -50.57 16 26 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 28 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 29 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 0.63 6.42 -2.39 -0.02 0.61 16 35 H 0.05 1.14 6.02 -2.39 -0.01 1.12 16 36 H 0.05 0.97 7.98 -2.39 -0.02 0.95 16 37 H 0.08 0.68 5.10 -2.38 -0.01 0.66 16 38 H 0.10 0.57 6.65 -2.39 -0.02 0.55 16 39 H 0.02 0.52 7.50 -2.39 -0.02 0.50 16 40 H 0.06 0.93 6.01 -2.39 -0.01 0.92 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.09 0.71 6.85 -2.39 -0.02 0.69 16 43 H 0.10 0.57 7.51 -2.39 -0.02 0.55 16 44 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 47 H 0.08 1.59 7.77 -2.39 -0.02 1.57 16 48 H 0.02 0.56 6.89 -2.39 -0.02 0.55 16 49 H 0.08 2.14 8.01 -2.39 -0.02 2.13 16 50 H 0.34 13.05 8.48 -89.69 -0.76 12.29 16 51 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 52 H 0.11 3.60 8.14 -2.38 -0.02 3.58 16 53 H 0.40 20.20 7.90 -92.71 -0.73 19.46 16 54 H 0.28 14.38 8.31 -92.70 -0.77 13.61 16 Total: -1.00 -75.67 418.72 0.84 -74.83 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: -0.59 Total: 43.09 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 6.29 Total: 15.68 kcal Atomic # 7 Polarization: -117.01 SS G_CDS: -6.80 Total: -123.80 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -0.09 Total: -55.60 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -75.67 0.84 -74.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714353527.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.166 kcal (2) G-P(sol) polarization free energy of solvation -75.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds