Wall clock time and date at job start Sat Apr 11 2020 05:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47425 * 2 1 4 4 C 1.53000 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46720 * 304.99803 * 4 3 2 6 6 C 1.52996 * 109.47203 * 65.00064 * 4 3 2 7 7 C 1.52996 * 109.47029 * 185.75863 * 6 4 3 8 8 C 1.50704 * 109.46886 * 184.99716 * 4 3 2 9 9 O 1.21273 * 120.00364 * 275.02111 * 8 4 3 10 10 N 1.34782 * 119.99632 * 95.01607 * 8 4 3 11 11 C 1.47428 * 125.64585 * 4.91891 * 10 8 4 12 12 C 1.54914 * 104.82914 * 155.91116 * 11 10 8 13 13 C 1.55158 * 101.58237 * 37.00541 * 12 11 10 14 14 C 1.47013 * 125.64753 * 184.96150 * 10 8 4 15 15 H 1.09001 * 109.88616 * 300.43609 * 14 10 8 16 16 C 1.53000 * 109.88210 * 61.60383 * 14 10 8 17 17 N 1.46905 * 109.46969 * 180.87308 * 16 14 10 18 18 C 1.46903 * 110.99494 * 185.04684 * 17 16 14 19 19 C 1.50703 * 109.46789 * 179.97438 * 18 17 16 20 20 O 1.21295 * 120.00159 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99788 * 179.97438 * 19 18 17 22 22 C 1.37105 * 120.00060 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99666 * 0.02562 * 22 21 19 24 24 C 1.38945 * 120.00385 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99665 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00084 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46918 * 90.00610 * 26 24 22 28 28 H 1.48501 * 109.47002 * 210.00150 * 26 24 22 29 29 H 1.48500 * 109.47238 * 330.00360 * 26 24 22 30 30 H 1.08996 * 109.47248 * 59.99749 * 1 2 3 31 31 H 1.08998 * 109.47227 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46830 * 299.99776 * 1 2 3 33 33 H 1.09003 * 109.46638 * 239.99725 * 2 1 3 34 34 H 1.08996 * 109.47248 * 120.00251 * 2 1 3 35 35 H 1.08993 * 109.46999 * 59.99953 * 3 2 1 36 36 H 1.09004 * 109.46880 * 300.00122 * 3 2 1 37 37 H 1.09001 * 109.47154 * 305.76119 * 6 4 3 38 38 H 1.08997 * 109.47470 * 65.75878 * 6 4 3 39 39 H 1.08998 * 109.47314 * 304.84345 * 7 6 4 40 40 H 1.08995 * 109.47286 * 64.84871 * 7 6 4 41 41 H 1.08999 * 109.47128 * 184.84442 * 7 6 4 42 42 H 1.08995 * 110.36841 * 37.07215 * 11 10 8 43 43 H 1.08998 * 110.36111 * 274.74451 * 11 10 8 44 44 H 1.08992 * 111.00371 * 278.93440 * 12 11 10 45 45 H 1.09002 * 111.03505 * 155.09026 * 12 11 10 46 46 H 1.08994 * 110.72007 * 206.13569 * 13 12 11 47 47 H 1.09003 * 110.71957 * 82.86237 * 13 12 11 48 48 H 1.09005 * 109.46793 * 300.86369 * 16 14 10 49 49 H 1.08995 * 109.47135 * 60.86656 * 16 14 10 50 50 H 1.00897 * 111.00188 * 61.09067 * 17 16 14 51 51 H 1.09001 * 109.46954 * 299.99236 * 18 17 16 52 52 H 1.08999 * 109.47785 * 59.99764 * 18 17 16 53 53 H 0.96998 * 120.00636 * 359.97438 * 21 19 18 54 54 H 0.97006 * 119.99817 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8528 0.8410 6 6 4.0795 0.8329 -1.3083 7 6 5.6026 0.7007 -1.2499 8 6 4.0726 2.8578 0.1231 9 8 4.1876 3.5492 -0.8666 10 7 4.3939 3.3553 1.3338 11 6 4.4000 2.5991 2.5994 12 6 5.3836 3.3685 3.5162 13 6 5.0895 4.8403 3.1230 14 6 4.7955 4.7421 1.6112 15 1 5.6919 4.9893 1.0425 16 6 3.6597 5.6971 1.2388 17 7 4.0781 7.0809 1.4999 18 6 2.9711 8.0182 1.2671 19 6 3.4368 9.4243 1.5450 20 8 4.5783 9.6257 1.9022 21 7 2.5849 10.4580 1.3965 22 6 3.0083 11.7372 1.6498 23 1 4.0247 11.9165 1.9678 24 6 2.1302 12.8030 1.4962 25 7 0.8936 12.5848 1.1087 26 14 2.7070 14.5457 1.8420 27 1 3.2559 15.1415 0.5974 28 1 1.5607 15.3613 2.3174 29 1 3.7628 14.5197 2.8859 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6768 1.9563 0.8899 36 1 1.6768 1.9563 -0.8900 37 1 3.6343 -0.1522 -1.4477 38 1 3.8026 1.4781 -2.1420 39 1 6.0434 1.6718 -1.0249 40 1 5.8759 -0.0116 -0.4714 41 1 5.9738 0.3474 -2.2120 42 1 4.7542 1.5820 2.4319 43 1 3.4026 2.5870 3.0387 44 1 6.4164 3.1030 3.2911 45 1 5.1573 3.1924 4.5678 46 1 5.9601 5.4698 3.3065 47 1 4.2197 5.2169 3.6613 48 1 3.4211 5.5831 0.1813 49 1 2.7788 5.4648 1.8372 50 1 4.8830 7.3264 0.9432 51 1 2.6425 7.9421 0.2306 52 1 2.1416 7.7729 1.9303 53 1 1.6721 10.2971 1.1105 54 1 0.2804 13.3289 1.0019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714353528.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:17 Heat of formation + Delta-G solvation = -118.970484 kcal Electronic energy + Delta-G solvation = -30181.386517 eV Core-core repulsion = 26150.983973 eV Total energy + Delta-G solvation = -4030.402544 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.52965 -40.19844 -39.02358 -37.10826 -36.63410 -35.80729 -33.92583 -33.30942 -32.64356 -31.39229 -29.98569 -28.28779 -26.43552 -25.86377 -24.72680 -23.91920 -22.98962 -22.08829 -21.41269 -21.05247 -19.98462 -19.57782 -18.43165 -17.95162 -17.22697 -17.02842 -16.54822 -16.31494 -16.06533 -15.96610 -15.74127 -15.36205 -15.16487 -14.95663 -14.83021 -14.49552 -14.11685 -14.06154 -14.03360 -13.80018 -13.68885 -13.49994 -13.25815 -13.23664 -12.94007 -12.87585 -12.63839 -12.60737 -12.44117 -12.35385 -12.12801 -12.08135 -11.95449 -11.86397 -11.72546 -11.63620 -11.54937 -11.53141 -11.28884 -10.67174 -10.41644 -10.04945 -9.71630 -9.43950 -8.48860 -5.98193 1.36731 1.40414 1.53756 1.59197 1.90262 2.00496 2.27967 2.90000 3.17647 3.38039 3.51857 3.68256 3.69011 3.79463 3.92298 3.93657 4.15763 4.21994 4.22893 4.29496 4.30769 4.31477 4.38957 4.45191 4.47133 4.48467 4.55870 4.64795 4.68631 4.71266 4.81380 4.84404 4.87984 4.95043 5.03909 5.04873 5.06240 5.12026 5.17376 5.26432 5.29587 5.32298 5.35020 5.38670 5.41161 5.45355 5.49851 5.77884 6.01762 6.22116 6.55015 6.56372 7.09168 7.17094 7.51761 8.06550 8.68694 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015535 B = 0.002061 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.986871 B =13585.285373 C =14297.711155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.104 4.104 4 C -0.094 4.094 5 H 0.117 0.883 6 C -0.110 4.110 7 C -0.151 4.151 8 C 0.526 3.474 9 O -0.586 6.586 10 N -0.614 5.614 11 C 0.095 3.905 12 C -0.126 4.126 13 C -0.110 4.110 14 C 0.141 3.859 15 H 0.052 0.948 16 C 0.062 3.938 17 N -0.666 5.666 18 C 0.066 3.934 19 C 0.440 3.560 20 O -0.620 6.620 21 N -0.572 5.572 22 C -0.334 4.334 23 H 0.080 0.920 24 C -0.015 4.015 25 N -0.921 5.921 26 Si 0.996 3.004 27 H -0.271 1.271 28 H -0.269 1.269 29 H -0.271 1.271 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.099 0.901 38 H 0.047 0.953 39 H 0.026 0.974 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.108 0.892 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.017 0.983 49 H 0.079 0.921 50 H 0.341 0.659 51 H 0.055 0.945 52 H 0.107 0.893 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.395 -31.896 2.232 32.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.142 4.142 4 C -0.115 4.115 5 H 0.135 0.865 6 C -0.148 4.148 7 C -0.208 4.208 8 C 0.316 3.684 9 O -0.466 6.466 10 N -0.347 5.347 11 C -0.027 4.027 12 C -0.164 4.164 13 C -0.148 4.148 14 C 0.037 3.963 15 H 0.070 0.930 16 C -0.068 4.068 17 N -0.297 5.297 18 C -0.067 4.067 19 C 0.227 3.773 20 O -0.506 6.506 21 N -0.209 5.209 22 C -0.464 4.464 23 H 0.098 0.902 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.819 3.181 27 H -0.197 1.197 28 H -0.194 1.194 29 H -0.196 1.196 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.117 0.883 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.120 0.880 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.126 0.874 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.036 0.964 49 H 0.098 0.902 50 H 0.159 0.841 51 H 0.073 0.927 52 H 0.125 0.875 53 H 0.230 0.770 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.908 -31.353 2.525 31.512 hybrid contribution -0.335 1.535 -1.407 2.109 sum 1.573 -29.818 1.118 29.880 Atomic orbital electron populations 1.21793 0.95790 1.02171 1.01580 1.21548 0.95840 0.94610 1.03374 1.21496 0.91631 0.99084 1.02034 1.21466 0.97500 0.90806 1.01750 0.86487 1.21517 0.96253 1.01596 0.95437 1.21778 0.95602 1.00752 1.02711 1.21089 0.76017 0.90275 0.81004 1.90686 1.55377 1.62595 1.37930 1.48766 1.67062 1.10740 1.08145 1.22657 1.01078 0.96521 0.82403 1.22843 0.99652 0.93036 1.00865 1.22491 1.02862 0.97920 0.91515 1.21370 0.95409 0.81435 0.98125 0.92986 1.22190 0.98532 0.87624 0.98478 1.60043 1.06919 1.00858 1.61922 1.21517 0.95126 0.89165 1.00854 1.20705 0.86135 0.87409 0.83021 1.90484 1.20967 1.86063 1.53118 1.41930 1.13284 1.05724 1.60003 1.19690 0.98483 0.83393 1.44819 0.90176 1.26097 0.95078 1.03899 0.96346 1.69683 1.05252 1.34399 1.46848 0.84889 0.77951 0.76560 0.78693 1.19669 1.19389 1.19616 0.93578 0.91631 0.92796 0.90972 0.90081 0.91575 0.93293 0.88281 0.93387 0.95484 0.90681 0.92095 0.87983 0.89703 0.90328 0.87385 0.90640 0.90415 0.96436 0.90220 0.84071 0.92687 0.87545 0.77030 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.91 71.98 0.71 -0.81 16 2 C -0.12 -1.03 5.70 30.60 0.17 -0.85 16 3 C -0.10 -1.44 4.67 30.59 0.14 -1.30 16 4 C -0.09 -1.39 1.90 -11.54 -0.02 -1.41 16 5 H 0.12 1.04 6.36 -2.39 -0.02 1.02 16 6 C -0.11 -1.67 5.05 30.59 0.15 -1.52 16 7 C -0.15 -2.28 9.81 71.98 0.71 -1.58 16 8 C 0.53 12.33 5.57 87.66 0.49 12.82 16 9 O -0.59 -19.66 15.24 -3.01 -0.05 -19.70 16 10 N -0.61 -12.41 3.07 -788.06 -2.42 -14.83 16 11 C 0.09 1.07 6.55 86.86 0.57 1.64 16 12 C -0.13 -1.47 7.09 31.99 0.23 -1.25 16 13 C -0.11 -2.18 6.19 31.78 0.20 -1.98 16 14 C 0.14 3.49 3.10 45.34 0.14 3.63 16 15 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 16 C 0.06 1.80 5.03 86.30 0.43 2.24 16 17 N -0.67 -23.24 5.79 -517.91 -3.00 -26.24 16 18 C 0.07 2.49 6.16 85.56 0.53 3.02 16 19 C 0.44 21.96 7.82 87.66 0.69 22.65 16 20 O -0.62 -35.48 15.78 -3.07 -0.05 -35.53 16 21 N -0.57 -30.54 5.29 -306.98 -1.62 -32.16 16 22 C -0.33 -19.49 9.68 84.04 0.81 -18.68 16 23 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 24 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 25 N -0.92 -50.83 13.05 21.66 0.28 -50.55 16 26 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 29 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.58 6.45 -2.39 -0.02 0.56 16 34 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.10 0.97 6.31 -2.39 -0.02 0.96 16 38 H 0.05 1.01 7.65 -2.39 -0.02 0.99 16 39 H 0.03 0.56 7.17 -2.39 -0.02 0.54 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.10 0.64 6.86 -2.39 -0.02 0.62 16 43 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.11 0.81 8.14 -2.39 -0.02 0.80 16 46 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.08 1.64 7.83 -2.39 -0.02 1.62 16 48 H 0.02 0.59 6.99 -2.38 -0.02 0.57 16 49 H 0.08 2.14 8.10 -2.39 -0.02 2.12 16 50 H 0.34 12.90 8.49 -89.70 -0.76 12.14 16 51 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 52 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 53 H 0.40 20.14 7.90 -92.71 -0.73 19.41 16 54 H 0.28 14.32 8.31 -92.70 -0.77 13.55 16 Total: -1.00 -75.02 426.50 0.99 -74.04 By element: Atomic # 1 Polarization: 43.53 SS G_CDS: -0.61 Total: 42.92 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 6.42 Total: 16.29 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -6.76 Total: -123.78 kcal Atomic # 8 Polarization: -55.14 SS G_CDS: -0.09 Total: -55.23 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -75.02 0.99 -74.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714353528.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.933 kcal (2) G-P(sol) polarization free energy of solvation -75.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds