Wall clock time and date at job start Sat Apr 11 2020 05:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47529 * 2 1 4 4 C 1.52997 * 109.47299 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46933 * 304.99918 * 4 3 2 6 6 C 1.52995 * 109.47421 * 64.99861 * 4 3 2 7 7 C 1.52995 * 109.47252 * 184.48363 * 6 4 3 8 8 C 1.50704 * 109.46893 * 184.99985 * 4 3 2 9 9 O 1.21273 * 119.99880 * 272.72323 * 8 4 3 10 10 N 1.34773 * 119.99767 * 92.72939 * 8 4 3 11 11 C 1.46507 * 120.00053 * 184.34284 * 10 8 4 12 12 H 1.09000 * 109.50246 * 34.99167 * 11 10 8 13 13 C 1.53118 * 109.49846 * 274.91874 * 11 10 8 14 14 C 1.53129 * 109.15800 * 182.44116 * 13 11 10 15 15 C 1.53031 * 109.30796 * 57.59219 * 14 13 11 16 16 N 1.46850 * 109.52643 * 300.84255 * 15 14 13 17 17 C 1.46904 * 110.99941 * 185.83687 * 16 15 14 18 18 C 1.50699 * 109.46936 * 171.59698 * 17 16 15 19 19 O 1.21294 * 119.99800 * 353.83806 * 18 17 16 20 20 N 1.34777 * 120.00146 * 173.84141 * 18 17 16 21 21 C 1.37089 * 119.99950 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00583 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00190 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99637 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00190 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47555 * 60.00000 * 25 23 21 27 27 H 1.48505 * 109.46997 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47254 * 299.99430 * 25 23 21 29 29 C 1.46850 * 111.19755 * 61.74312 * 16 15 14 30 30 H 1.09001 * 109.46769 * 299.99837 * 1 2 3 31 31 H 1.09004 * 109.46853 * 59.99736 * 1 2 3 32 32 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47095 * 239.99771 * 2 1 3 34 34 H 1.08999 * 109.47300 * 120.00247 * 2 1 3 35 35 H 1.08997 * 109.46874 * 59.99532 * 3 2 1 36 36 H 1.08999 * 109.47031 * 300.00412 * 3 2 1 37 37 H 1.09007 * 109.47181 * 304.48514 * 6 4 3 38 38 H 1.09002 * 109.47154 * 64.48309 * 6 4 3 39 39 H 1.09001 * 109.47106 * 303.75534 * 7 6 4 40 40 H 1.08993 * 109.47305 * 63.75927 * 7 6 4 41 41 H 1.09006 * 109.47435 * 183.76074 * 7 6 4 42 42 H 0.97002 * 120.00636 * 4.32869 * 10 8 4 43 43 H 1.09005 * 109.52354 * 302.30428 * 13 11 10 44 44 H 1.09001 * 109.52539 * 62.49824 * 13 11 10 45 45 H 1.08999 * 109.46705 * 297.65424 * 14 13 11 46 46 H 1.08998 * 109.53773 * 177.57597 * 14 13 11 47 47 H 1.09003 * 109.46687 * 180.82507 * 15 14 13 48 48 H 1.09006 * 109.45779 * 60.85329 * 15 14 13 49 49 H 1.08997 * 109.47452 * 291.59669 * 17 16 15 50 50 H 1.09005 * 109.46690 * 51.60133 * 17 16 15 51 51 H 0.96994 * 119.99662 * 359.97438 * 20 18 17 52 52 H 0.97003 * 120.00189 * 179.97438 * 24 23 21 53 53 H 1.09002 * 109.46086 * 178.24317 * 29 16 15 54 54 H 1.09004 * 109.45093 * 58.27180 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8528 0.8410 6 6 4.0796 0.8330 -1.3082 7 6 5.6054 0.7301 -1.2625 8 6 4.0725 2.8578 0.1232 9 8 4.2271 3.5355 -0.8706 10 7 4.3500 3.3704 1.3383 11 6 4.7470 4.7748 1.4677 12 1 4.2120 5.3735 0.7306 13 6 6.2547 4.9033 1.2337 14 6 6.6711 6.3637 1.4307 15 6 6.2770 6.8167 2.8383 16 7 4.8256 6.6752 3.0112 17 6 4.3925 7.2297 4.3007 18 6 2.8867 7.2559 4.3559 19 8 2.2387 6.9583 3.3748 20 7 2.2602 7.6100 5.4955 21 6 0.8904 7.6333 5.5458 22 1 0.3133 7.3682 4.6723 23 6 0.2444 7.9978 6.7208 24 7 0.9466 8.3198 7.7839 25 14 -1.6220 8.0288 6.7896 26 1 -2.1509 6.6727 6.4954 27 1 -2.0605 8.4472 8.1454 28 1 -2.1386 8.9907 5.7831 29 6 4.4087 5.2738 2.8743 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9563 -0.8899 37 1 3.6520 -0.1615 -1.4364 38 1 3.7830 1.4665 -2.1442 39 1 6.0302 1.7148 -1.0677 40 1 5.8996 0.0438 -0.4685 41 1 5.9733 0.3584 -2.2189 42 1 4.2867 2.8097 2.1274 43 1 6.7888 4.2737 1.9454 44 1 6.4937 4.5897 0.2175 45 1 6.1669 6.9879 0.6930 46 1 7.7503 6.4548 1.3078 47 1 6.5591 7.8605 2.9763 48 1 6.7923 6.2009 3.5755 49 1 4.7750 6.6083 5.1104 50 1 4.7777 8.2438 4.4079 51 1 2.7785 7.8476 6.2801 52 1 0.4957 8.5747 8.6041 53 1 3.3338 5.1971 3.0382 54 1 4.9328 4.6655 3.6114 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714922354.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:09 Heat of formation + Delta-G solvation = -123.216640 kcal Electronic energy + Delta-G solvation = -30636.082800 eV Core-core repulsion = 26605.496129 eV Total energy + Delta-G solvation = -4030.586671 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.41484 -40.50391 -39.17489 -37.21893 -36.08310 -35.70171 -33.91924 -33.70651 -33.22345 -31.07484 -29.78399 -28.95030 -26.51354 -25.70162 -24.23835 -24.20380 -23.07585 -21.90408 -21.23712 -21.02044 -20.46172 -19.86144 -18.28818 -17.74126 -17.45378 -16.56132 -16.48005 -16.27128 -16.19403 -16.02489 -15.74873 -15.46242 -15.31816 -14.90860 -14.80527 -14.75916 -14.41779 -14.11237 -14.06685 -13.80312 -13.64887 -13.54203 -13.23728 -13.05586 -12.99143 -12.74197 -12.61331 -12.43618 -12.38373 -12.27193 -12.13480 -12.02671 -11.92289 -11.78715 -11.73963 -11.67854 -11.58670 -11.43136 -11.31738 -10.64182 -10.30260 -10.07101 -9.97810 -9.20865 -8.46485 -5.94730 1.38658 1.40812 1.51279 1.62561 2.06081 2.08322 2.28798 2.83716 3.20640 3.39518 3.59161 3.71639 3.79942 3.86687 3.92739 4.03714 4.15163 4.21149 4.24329 4.28349 4.31913 4.35454 4.44479 4.48117 4.55678 4.56266 4.63214 4.69529 4.70528 4.71954 4.80361 4.87541 4.93045 4.94389 4.99178 5.03553 5.04818 5.14033 5.21671 5.24826 5.30520 5.32180 5.35416 5.39284 5.40999 5.46705 5.48764 5.88618 6.07212 6.22839 6.55678 6.61713 7.13715 7.26833 7.57413 8.13890 8.70697 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009230 B = 0.002952 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.722275 B = 9483.973878 C =12138.257685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C -0.109 4.109 4 C -0.098 4.098 5 H 0.117 0.883 6 C -0.107 4.107 7 C -0.151 4.151 8 C 0.516 3.484 9 O -0.582 6.582 10 N -0.717 5.717 11 C 0.159 3.841 12 H 0.051 0.949 13 C -0.118 4.118 14 C -0.109 4.109 15 C 0.054 3.946 16 N -0.537 5.537 17 C 0.061 3.939 18 C 0.439 3.561 19 O -0.615 6.615 20 N -0.573 5.573 21 C -0.332 4.332 22 H 0.076 0.924 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.989 3.011 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.274 1.274 29 C 0.058 3.942 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.050 0.950 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.411 0.589 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.099 0.901 47 H 0.090 0.910 48 H 0.052 0.948 49 H 0.071 0.929 50 H 0.114 0.886 51 H 0.396 0.604 52 H 0.278 0.722 53 H 0.062 0.938 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.160 -16.722 -9.479 22.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.153 4.153 3 C -0.147 4.147 4 C -0.119 4.119 5 H 0.135 0.865 6 C -0.145 4.145 7 C -0.208 4.208 8 C 0.304 3.696 9 O -0.461 6.461 10 N -0.369 5.369 11 C 0.053 3.947 12 H 0.069 0.931 13 C -0.156 4.156 14 C -0.147 4.147 15 C -0.073 4.073 16 N -0.262 5.262 17 C -0.070 4.070 18 C 0.227 3.773 19 O -0.501 6.501 20 N -0.211 5.211 21 C -0.461 4.461 22 H 0.094 0.906 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.813 3.187 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.200 1.200 29 C -0.070 4.070 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.115 0.885 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.247 0.753 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.117 0.883 47 H 0.108 0.892 48 H 0.070 0.930 49 H 0.089 0.911 50 H 0.132 0.868 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.080 0.920 54 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.546 -16.090 -10.994 22.651 hybrid contribution -0.677 0.122 1.469 1.622 sum 10.869 -15.968 -9.526 21.537 Atomic orbital electron populations 1.21808 0.96014 1.02219 1.01436 1.21543 0.95707 0.94549 1.03460 1.21534 0.92257 0.99112 1.01826 1.21454 0.97031 0.91213 1.02187 0.86544 1.21477 0.96412 1.01479 0.95084 1.21781 0.95370 1.00983 1.02712 1.21268 0.75657 0.90241 0.82401 1.90658 1.54230 1.63094 1.38127 1.46034 1.69375 1.11860 1.09586 1.20676 0.95879 0.81678 0.96423 0.93092 1.21875 0.93955 0.97948 1.01864 1.21531 1.01992 0.94954 0.96233 1.22273 0.85199 1.02491 0.97336 1.61305 1.15033 1.17970 1.31939 1.21731 0.91384 1.02660 0.91264 1.20817 0.90938 0.82402 0.83165 1.90496 1.68629 1.54383 1.36634 1.41923 1.06725 1.60274 1.12171 1.19579 0.82871 1.45100 0.98580 0.90560 1.25981 1.04687 0.96155 0.94264 1.69658 1.37960 1.45873 1.02589 0.85046 0.77150 0.78817 0.77686 1.19674 1.19393 1.19959 1.22178 1.01224 0.88334 0.95290 0.93507 0.93286 0.91349 0.90326 0.90394 0.92522 0.93028 0.88454 0.93106 0.94950 0.91025 0.91841 0.75300 0.90192 0.92474 0.92768 0.88261 0.89201 0.92997 0.91088 0.86844 0.76989 0.91299 0.91973 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.91 71.98 0.71 -1.68 16 2 C -0.12 -1.59 5.69 30.59 0.17 -1.42 16 3 C -0.11 -2.12 4.66 30.59 0.14 -1.98 16 4 C -0.10 -1.80 2.20 -11.54 -0.03 -1.83 16 5 H 0.12 1.48 8.12 -2.38 -0.02 1.46 16 6 C -0.11 -1.83 4.99 30.59 0.15 -1.68 16 7 C -0.15 -2.46 9.77 71.98 0.70 -1.75 16 8 C 0.52 13.86 5.83 87.66 0.51 14.37 16 9 O -0.58 -20.71 15.52 -3.01 -0.05 -20.76 16 10 N -0.72 -17.85 5.08 -442.29 -2.25 -20.09 16 11 C 0.16 4.70 2.58 45.04 0.12 4.82 16 12 H 0.05 1.98 7.65 -2.39 -0.02 1.96 16 13 C -0.12 -2.78 5.58 30.68 0.17 -2.61 16 14 C -0.11 -2.38 6.09 30.65 0.19 -2.19 16 15 C 0.05 1.23 5.46 86.32 0.47 1.70 16 16 N -0.54 -17.30 4.39 -900.90 -3.95 -21.25 16 17 C 0.06 2.05 5.45 85.56 0.47 2.52 16 18 C 0.44 20.80 7.31 87.66 0.64 21.44 16 19 O -0.62 -34.27 14.09 -3.07 -0.04 -34.31 16 20 N -0.57 -29.20 5.29 -306.98 -1.62 -30.82 16 21 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 22 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 24 N -0.92 -49.35 13.05 21.66 0.28 -49.06 16 25 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 28 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 29 C 0.06 1.85 4.58 86.32 0.40 2.25 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 0.90 6.47 -2.38 -0.02 0.88 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 37 H 0.10 1.17 6.37 -2.38 -0.02 1.15 16 38 H 0.05 1.13 7.69 -2.39 -0.02 1.11 16 39 H 0.03 0.68 7.01 -2.39 -0.02 0.67 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.41 7.79 8.59 -92.71 -0.80 7.00 16 43 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 45 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.09 1.84 8.03 -2.39 -0.02 1.82 16 48 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 49 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.11 3.37 8.02 -2.38 -0.02 3.35 16 51 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 52 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 53 H 0.06 2.54 5.85 -2.39 -0.01 2.53 16 54 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -73.93 422.88 -0.15 -74.08 By element: Atomic # 1 Polarization: 44.00 SS G_CDS: -0.65 Total: 43.35 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 6.10 Total: 13.85 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -7.54 Total: -121.23 kcal Atomic # 8 Polarization: -54.98 SS G_CDS: -0.09 Total: -55.07 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -73.93 -0.15 -74.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714922354.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.139 kcal (2) G-P(sol) polarization free energy of solvation -73.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds