Wall clock time and date at job start Sat Apr 11 2020 05:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47469 * 2 1 4 4 C 1.52999 * 109.46990 * 120.00036 * 2 1 3 5 5 H 1.08995 * 109.47393 * 299.99431 * 4 2 1 6 6 C 1.53002 * 109.46954 * 179.97438 * 4 2 1 7 7 N 1.46496 * 109.47425 * 185.00296 * 6 4 2 8 8 C 1.34777 * 120.00266 * 180.02562 * 7 6 4 9 9 O 1.21274 * 120.00135 * 0.27234 * 8 7 6 10 10 C 1.50706 * 119.99766 * 179.97438 * 8 7 6 11 11 H 1.08993 * 110.85681 * 300.69525 * 10 8 7 12 12 C 1.54623 * 110.96910 * 64.49187 * 10 8 7 13 13 C 1.51381 * 104.15220 * 93.33098 * 12 10 8 14 14 O 1.21282 * 124.93699 * 196.22242 * 13 12 10 15 15 N 1.34421 * 110.12280 * 16.25098 * 13 12 10 16 16 C 1.46494 * 124.34867 * 180.38069 * 15 13 12 17 17 C 1.53005 * 109.47164 * 240.02774 * 16 15 13 18 18 C 1.52998 * 109.47381 * 0.02836 * 16 15 13 19 19 C 1.53003 * 109.47172 * 120.02848 * 16 15 13 20 20 C 1.46758 * 111.29992 * 0.40980 * 15 13 12 21 21 N 1.46501 * 109.47155 * 59.99920 * 4 2 1 22 22 C 1.36928 * 120.00163 * 274.99942 * 21 4 2 23 23 H 1.08002 * 120.00018 * 359.97438 * 22 21 4 24 24 C 1.38816 * 120.00590 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99301 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00322 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47319 * 89.99765 * 26 24 22 28 28 H 1.48507 * 109.46974 * 209.99848 * 26 24 22 29 29 H 1.48500 * 109.47125 * 329.99283 * 26 24 22 30 30 H 1.09008 * 109.46873 * 300.00094 * 1 2 3 31 31 H 1.08997 * 109.47047 * 59.99783 * 1 2 3 32 32 H 1.08997 * 109.47298 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46873 * 239.99906 * 2 1 3 34 34 H 1.08998 * 109.47714 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46918 * 300.00649 * 3 2 1 36 36 H 1.08997 * 109.47151 * 59.99590 * 3 2 1 37 37 H 1.09004 * 109.46930 * 65.00118 * 6 4 2 38 38 H 1.09000 * 109.47312 * 305.00062 * 6 4 2 39 39 H 0.96999 * 119.99691 * 359.97438 * 7 6 4 40 40 H 1.09005 * 110.48456 * 211.99486 * 12 10 8 41 41 H 1.08998 * 110.48845 * 334.63484 * 12 10 8 42 42 H 1.09002 * 109.47004 * 60.00331 * 17 16 15 43 43 H 1.09002 * 109.47099 * 180.02562 * 17 16 15 44 44 H 1.08995 * 109.46821 * 300.00281 * 17 16 15 45 45 H 1.09004 * 109.47006 * 60.00132 * 18 16 15 46 46 H 1.09002 * 109.47148 * 179.97438 * 18 16 15 47 47 H 1.09002 * 109.47271 * 299.99965 * 18 16 15 48 48 H 1.09004 * 109.46573 * 59.99876 * 19 16 15 49 49 H 1.08993 * 109.47324 * 180.02562 * 19 16 15 50 50 H 1.08992 * 109.47132 * 300.00278 * 19 16 15 51 51 H 1.09002 * 110.24403 * 223.97948 * 20 15 13 52 52 H 1.09002 * 110.24998 * 101.98039 * 20 15 13 53 53 H 0.97003 * 119.99709 * 94.99812 * 21 4 2 54 54 H 0.97001 * 119.99205 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 3.5700 -0.7218 1.2489 7 7 4.0584 -1.5141 2.3802 8 6 5.3834 -1.6554 2.5820 9 8 6.1715 -1.1226 1.8299 10 6 5.8857 -2.4700 3.7462 11 1 5.5249 -2.0614 4.6901 12 6 5.4838 -3.9555 3.5965 13 6 6.6734 -4.5935 2.9114 14 8 6.6613 -5.6752 2.3630 15 7 7.7452 -3.7872 2.9998 16 6 9.0611 -4.0966 2.4352 17 6 10.1018 -4.1312 3.5562 18 6 9.0114 -5.4602 1.7431 19 6 9.4446 -3.0213 1.4164 20 6 7.4280 -2.5574 3.7352 21 7 1.5516 -2.1025 1.2492 22 6 0.3101 -2.3897 1.7504 23 1 -0.3089 -1.5981 2.1461 24 6 -0.1525 -3.6985 1.7509 25 7 0.6022 -4.6634 1.2692 26 14 -1.8464 -4.0902 2.4339 27 1 -2.8525 -3.9975 1.3457 28 1 -1.8483 -5.4656 2.9941 29 1 -2.1849 -3.1191 3.5052 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9563 0.8899 37 1 3.9337 0.3019 1.3383 38 1 3.9330 -1.1564 0.3175 39 1 3.4280 -1.9364 2.9846 40 1 5.3196 -4.4068 4.5751 41 1 4.5912 -4.0488 2.9778 42 1 9.8287 -4.8973 4.2820 43 1 11.0810 -4.3610 3.1360 44 1 10.1372 -3.1598 4.0492 45 1 8.2700 -5.4355 0.9444 46 1 9.9904 -5.6901 1.3226 47 1 8.7383 -6.2262 2.4689 48 1 9.4800 -2.0499 1.9095 49 1 10.4234 -3.2517 0.9960 50 1 8.7032 -2.9966 0.6178 51 1 7.8512 -1.6926 3.2242 52 1 7.8096 -2.6182 4.7544 53 1 2.1078 -2.8135 0.8942 54 1 0.2788 -5.5779 1.2692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715490476.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:06 Heat of formation + Delta-G solvation = -91.045890 kcal Electronic energy + Delta-G solvation = -31678.703350 eV Core-core repulsion = 27649.511707 eV Total energy + Delta-G solvation = -4029.191643 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -42.10395 -40.42197 -38.76793 -37.75446 -36.50993 -35.26445 -34.89935 -32.25704 -31.58625 -29.46325 -28.93259 -28.22063 -28.05569 -27.45849 -25.80479 -24.38154 -22.92689 -22.49482 -21.26042 -20.56549 -19.64389 -19.23038 -18.41089 -17.60382 -17.08243 -16.92471 -16.65088 -16.26942 -15.94464 -15.64507 -15.29375 -15.10862 -14.93868 -14.93081 -14.76706 -14.71333 -14.39722 -14.06161 -13.92436 -13.58587 -13.41567 -13.14666 -13.01820 -12.92828 -12.89675 -12.83001 -12.73737 -12.64823 -12.61483 -12.46172 -12.39469 -12.24086 -12.11307 -11.97441 -11.94974 -11.75396 -11.43663 -11.27604 -10.90658 -10.72973 -10.47253 -9.96772 -9.64137 -8.94397 -7.85220 -5.12763 1.50513 1.52324 1.54964 1.59266 1.62590 2.00239 2.27626 2.61295 3.31038 3.36365 3.47994 3.72264 3.83067 3.88772 3.92829 3.94855 3.96266 4.09183 4.30731 4.32784 4.37865 4.47982 4.55884 4.59413 4.65143 4.66133 4.70299 4.77186 4.78900 4.81363 4.85472 4.89369 4.93321 4.93835 4.93921 4.99340 5.08287 5.16589 5.17586 5.27522 5.28394 5.34443 5.38158 5.55502 5.62832 5.66237 5.73404 5.77934 6.16942 6.33599 6.62207 7.18773 7.26529 7.41885 8.13657 8.38146 9.37182 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012107 B = 0.003315 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.239299 B = 8444.583883 C = 9978.345245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 C -0.139 4.139 4 C 0.173 3.827 5 H 0.062 0.938 6 C 0.124 3.876 7 N -0.709 5.709 8 C 0.512 3.488 9 O -0.576 6.576 10 C -0.112 4.112 11 H 0.168 0.832 12 C -0.143 4.143 13 C 0.503 3.497 14 O -0.575 6.575 15 N -0.603 5.603 16 C 0.165 3.835 17 C -0.146 4.146 18 C -0.134 4.134 19 C -0.148 4.148 20 C 0.117 3.883 21 N -0.727 5.727 22 C -0.212 4.212 23 H 0.081 0.919 24 C -0.070 4.070 25 N -0.967 5.967 26 Si 0.956 3.044 27 H -0.298 1.298 28 H -0.305 1.305 29 H -0.266 1.266 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.038 0.962 39 H 0.412 0.588 40 H 0.143 0.857 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.031 0.969 46 H 0.080 0.920 47 H 0.051 0.949 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.028 0.972 51 H 0.091 0.909 52 H 0.118 0.882 53 H 0.370 0.630 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.755 9.760 8.520 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 C -0.197 4.197 4 C 0.064 3.936 5 H 0.080 0.920 6 C -0.001 4.001 7 N -0.360 5.360 8 C 0.299 3.701 9 O -0.456 6.456 10 C -0.134 4.134 11 H 0.185 0.815 12 C -0.184 4.184 13 C 0.292 3.708 14 O -0.455 6.455 15 N -0.336 5.336 16 C 0.082 3.918 17 C -0.203 4.203 18 C -0.192 4.192 19 C -0.206 4.206 20 C -0.006 4.006 21 N -0.367 5.367 22 C -0.344 4.344 23 H 0.099 0.901 24 C -0.263 4.263 25 N -0.618 5.618 26 Si 0.787 3.213 27 H -0.226 1.226 28 H -0.232 1.232 29 H -0.190 1.190 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.248 0.752 40 H 0.160 0.840 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.050 0.950 46 H 0.098 0.902 47 H 0.070 0.930 48 H 0.088 0.912 49 H 0.105 0.895 50 H 0.047 0.953 51 H 0.109 0.891 52 H 0.136 0.864 53 H 0.202 0.798 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.209 9.620 7.771 21.191 hybrid contribution -1.593 -1.314 -0.314 2.089 sum 15.616 8.305 7.457 19.195 Atomic orbital electron populations 1.21733 0.95443 1.01695 1.00338 1.21643 0.96398 0.96410 0.98499 1.21839 1.00867 0.94806 1.02211 1.20688 0.90184 0.85957 0.96739 0.92032 1.21578 0.94490 0.95659 0.88365 1.45962 1.07005 1.52510 1.30483 1.20801 0.82167 0.80603 0.86507 1.90649 1.55962 1.50356 1.48658 1.22382 0.97144 0.93999 0.99830 0.81506 1.22406 0.96885 0.94462 1.04618 1.21318 0.86266 0.84242 0.79010 1.90707 1.85044 1.23139 1.46607 1.48500 1.10172 1.20227 1.54750 1.20660 0.81631 0.95216 0.94288 1.22104 0.97968 1.03125 0.97150 1.21996 1.01376 0.95574 1.00218 1.22094 1.01709 0.98716 0.98054 1.22171 0.92591 0.87256 0.98546 1.42595 1.17254 1.03375 1.73467 1.19458 0.93216 0.91988 1.29744 0.90098 1.25342 1.01058 0.96252 1.03623 1.69822 1.38307 0.99681 1.54027 0.85389 0.81165 0.76697 0.78022 1.22555 1.23204 1.19026 0.93147 0.93253 0.93344 0.93723 0.92344 0.92322 0.91904 0.89709 0.94319 0.75194 0.83967 0.89720 0.92573 0.89669 0.90546 0.94964 0.90159 0.93004 0.91229 0.89453 0.95274 0.89055 0.86417 0.79838 0.94617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 8.26 71.98 0.59 -3.97 16 2 C -0.11 -3.46 2.69 -10.79 -0.03 -3.49 16 3 C -0.14 -3.41 8.84 71.98 0.64 -2.77 16 4 C 0.17 5.94 2.18 44.99 0.10 6.03 16 5 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 6 C 0.12 3.92 4.73 86.38 0.41 4.32 16 7 N -0.71 -21.09 5.20 -463.06 -2.41 -23.50 16 8 C 0.51 14.55 7.12 87.66 0.62 15.17 16 9 O -0.58 -19.75 15.51 -3.01 -0.05 -19.80 16 10 C -0.11 -2.21 3.54 -10.48 -0.04 -2.25 16 11 H 0.17 1.84 8.14 -2.39 -0.02 1.82 16 12 C -0.14 -3.60 6.40 30.62 0.20 -3.40 16 13 C 0.50 15.81 7.85 87.93 0.69 16.50 16 14 O -0.57 -23.22 13.99 -3.04 -0.04 -23.26 16 15 N -0.60 -14.69 2.76 -770.90 -2.13 -16.81 16 16 C 0.16 3.59 1.20 3.61 0.00 3.60 16 17 C -0.15 -2.09 8.54 71.98 0.61 -1.47 16 18 C -0.13 -3.51 7.00 71.98 0.50 -3.01 16 19 C -0.15 -3.09 8.49 71.98 0.61 -2.48 16 20 C 0.12 2.08 5.95 86.83 0.52 2.60 16 21 N -0.73 -32.28 4.44 -322.94 -1.43 -33.71 16 22 C -0.21 -10.42 7.57 84.04 0.64 -9.78 16 23 H 0.08 3.80 7.40 -2.91 -0.02 3.78 16 24 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 25 N -0.97 -57.06 13.06 21.65 0.28 -56.78 16 26 Si 0.96 44.19 29.55 68.60 2.03 46.21 16 27 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 28 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 29 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 30 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 2.01 6.01 -2.39 -0.01 2.00 16 33 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.06 1.35 6.55 -2.39 -0.02 1.33 16 35 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 2.39 6.71 -2.38 -0.02 2.38 16 38 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.41 12.29 8.14 -92.71 -0.75 11.54 16 40 H 0.14 2.68 8.14 -2.38 -0.02 2.66 16 41 H 0.08 2.71 7.75 -2.39 -0.02 2.70 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 43 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.08 0.85 7.90 -2.39 -0.02 0.84 16 45 H 0.03 1.06 7.08 -2.38 -0.02 1.05 16 46 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.05 1.51 7.06 -2.39 -0.02 1.50 16 48 H 0.07 1.33 7.21 -2.38 -0.02 1.31 16 49 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 50 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.09 1.81 5.96 -2.39 -0.01 1.79 16 52 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 53 H 0.37 18.75 7.80 -92.71 -0.72 18.02 16 54 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -71.58 417.63 2.20 -69.38 By element: Atomic # 1 Polarization: 46.56 SS G_CDS: -0.59 Total: 45.97 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 6.54 Total: 12.29 kcal Atomic # 7 Polarization: -125.12 SS G_CDS: -5.69 Total: -130.80 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -0.09 Total: -43.06 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -71.58 2.20 -69.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715490476.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.661 kcal (2) G-P(sol) polarization free energy of solvation -71.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds