Wall clock time and date at job start Sat Apr 11 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47136 * 2 1 4 4 C 1.53000 * 109.47045 * 119.99801 * 2 1 3 5 5 N 1.46500 * 109.46918 * 175.00306 * 4 2 1 6 6 C 1.46759 * 124.35000 * 90.00486 * 5 4 2 7 7 C 1.54479 * 105.47361 * 162.95804 * 6 5 4 8 8 H 1.09002 * 110.97302 * 267.25629 * 7 6 5 9 9 C 1.50702 * 110.96927 * 143.52937 * 7 6 5 10 10 O 1.21283 * 120.00262 * 3.09251 * 9 7 6 11 11 N 1.34777 * 119.99928 * 182.81157 * 9 7 6 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 7 13 13 C 1.52997 * 109.47555 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.46716 * 64.99947 * 13 12 11 15 15 N 1.46496 * 109.47141 * 305.00435 * 13 12 11 16 16 C 1.36944 * 120.00042 * 154.99672 * 15 13 12 17 17 H 1.07996 * 119.99561 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99744 * 180.02562 * 16 15 13 19 19 N 1.31626 * 119.99832 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00397 * 359.97438 * 18 16 15 21 21 H 1.48490 * 109.47108 * 89.99989 * 20 18 16 22 22 H 1.48505 * 109.46909 * 210.00383 * 20 18 16 23 23 H 1.48502 * 109.46750 * 329.99846 * 20 18 16 24 24 C 1.53002 * 109.47339 * 185.00128 * 13 12 11 25 25 C 1.53004 * 109.47023 * 180.02562 * 24 13 12 26 26 C 1.52998 * 109.47032 * 299.99848 * 24 13 12 27 27 C 1.54629 * 101.79998 * 25.39737 * 7 6 5 28 28 C 1.34415 * 124.34746 * 269.97058 * 5 4 2 29 29 O 1.21281 * 124.94507 * 0.44216 * 28 5 4 30 30 H 1.08998 * 109.47840 * 300.00577 * 1 2 3 31 31 H 1.09008 * 109.46934 * 60.00555 * 1 2 3 32 32 H 1.09000 * 109.47313 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47097 * 239.99975 * 2 1 3 34 34 H 1.08991 * 109.47089 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47028 * 299.99816 * 3 2 1 36 36 H 1.08995 * 109.46828 * 59.99353 * 3 2 1 37 37 H 1.08995 * 109.46882 * 54.99950 * 4 2 1 38 38 H 1.09003 * 109.47101 * 294.99967 * 4 2 1 39 39 H 1.09001 * 110.24921 * 43.95746 * 6 5 4 40 40 H 1.09008 * 110.31593 * 281.99305 * 6 5 4 41 41 H 0.97000 * 120.00317 * 0.28382 * 11 9 7 42 42 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 43 43 H 1.09002 * 109.46857 * 59.99862 * 12 11 9 44 44 H 0.96998 * 120.00378 * 334.99902 * 15 13 12 45 45 H 0.96992 * 119.99933 * 179.97438 * 19 18 16 46 46 H 1.08997 * 109.46706 * 60.00439 * 24 13 12 47 47 H 1.09002 * 109.47174 * 59.99732 * 25 24 13 48 48 H 1.09002 * 109.46946 * 180.02562 * 25 24 13 49 49 H 1.09000 * 109.46819 * 299.99919 * 25 24 13 50 50 H 1.09008 * 109.46810 * 60.00581 * 26 24 13 51 51 H 1.09002 * 109.46841 * 179.97438 * 26 24 13 52 52 H 1.08997 * 109.47793 * 300.00439 * 26 24 13 53 53 H 1.08996 * 110.48912 * 93.89564 * 27 7 6 54 54 H 1.09000 * 110.48718 * 216.54749 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.4248 0.1773 1.7306 7 6 5.7903 -0.5369 1.8393 8 1 5.9249 -0.9727 2.8293 9 6 6.9194 0.4053 1.5098 10 8 6.6855 1.5699 1.2648 11 7 8.1896 -0.0450 1.4929 12 6 9.2878 0.8722 1.1784 13 6 10.6156 0.1135 1.2262 14 1 10.6329 -0.6383 0.4372 15 7 10.7568 -0.5421 2.5286 16 6 11.5485 -1.6524 2.6540 17 1 12.0685 -2.0449 1.7926 18 6 11.6819 -2.2740 3.8880 19 7 12.4425 -3.3414 4.0084 20 14 10.7820 -1.5955 5.3777 21 1 9.4443 -2.2319 5.4801 22 1 11.5650 -1.8888 6.6049 23 1 10.6214 -0.1264 5.2322 24 6 11.7714 1.0949 1.0212 25 6 13.0991 0.3360 1.0683 26 6 11.6239 1.7795 -0.3391 27 6 5.6573 -1.6390 0.7628 28 6 4.1647 -1.8545 0.6359 29 8 3.6441 -2.8156 0.1103 30 1 -0.3635 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6765 1.9563 0.8899 37 1 1.6053 -1.7197 1.2952 38 1 1.7516 -0.1582 2.1370 39 1 4.0917 0.5062 2.7149 40 1 4.4971 1.0284 1.0534 41 1 8.3767 -0.9764 1.6887 42 1 9.1416 1.2856 0.1805 43 1 9.3051 1.6819 1.9080 44 1 10.2895 -0.1899 3.3022 45 1 12.5359 -3.7755 4.8707 46 1 11.7539 1.8466 1.8103 47 1 13.1163 -0.4156 0.2791 48 1 13.9226 1.0352 0.9227 49 1 13.2044 -0.1521 2.0372 50 1 10.6779 2.3202 -0.3730 51 1 12.4471 2.4790 -0.4849 52 1 11.6412 1.0278 -1.1281 53 1 6.0755 -1.2993 -0.1847 54 1 6.1489 -2.5546 1.0915 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715492520.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:21 Heat of formation + Delta-G solvation = -97.953230 kcal Electronic energy + Delta-G solvation = -30814.617453 eV Core-core repulsion = 26785.126286 eV Total energy + Delta-G solvation = -4029.491167 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.95257 -40.46385 -38.86528 -37.81086 -36.56906 -35.30950 -34.91276 -33.04294 -32.59828 -29.80560 -28.86928 -28.01221 -27.60118 -27.28669 -25.45890 -24.08254 -22.92147 -21.67808 -21.34029 -20.80494 -20.30585 -19.53052 -18.53504 -17.84249 -17.13357 -17.04245 -16.89993 -16.37823 -16.07515 -15.82628 -15.65974 -15.22117 -15.07437 -15.00572 -14.77010 -14.55018 -14.46991 -14.21221 -14.01131 -13.81378 -13.70761 -13.43025 -13.11262 -12.91819 -12.90571 -12.82569 -12.71299 -12.53632 -12.48094 -12.43187 -12.29425 -12.26260 -11.90891 -11.76694 -11.72920 -11.66194 -11.48514 -11.30402 -11.17868 -10.87351 -10.72385 -10.01676 -9.72837 -9.24113 -7.91951 -5.24431 1.42359 1.44423 1.45180 1.52052 1.56791 1.87511 2.25729 2.55305 3.17537 3.31664 3.38570 3.61111 3.74595 3.80487 3.89168 3.90239 3.94218 4.11959 4.17752 4.28456 4.30795 4.45293 4.47929 4.49021 4.55208 4.60940 4.64010 4.74001 4.75979 4.78676 4.81088 4.87508 4.93237 4.97947 4.99145 5.03856 5.08687 5.18793 5.22087 5.26763 5.30867 5.33974 5.40888 5.52755 5.56693 5.64558 5.77597 5.90967 6.01229 6.30209 6.56137 7.04924 7.16763 7.20116 7.90971 8.09847 9.29123 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.002785 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.210374 B =10052.376400 C =11182.483436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 C -0.147 4.147 4 C 0.126 3.874 5 N -0.609 5.609 6 C 0.118 3.882 7 C -0.118 4.118 8 H 0.138 0.862 9 C 0.528 3.472 10 O -0.570 6.570 11 N -0.713 5.713 12 C 0.119 3.881 13 C 0.174 3.826 14 H 0.058 0.942 15 N -0.744 5.744 16 C -0.201 4.201 17 H 0.066 0.934 18 C -0.062 4.062 19 N -0.985 5.985 20 Si 0.942 3.058 21 H -0.275 1.275 22 H -0.311 1.311 23 H -0.258 1.258 24 C -0.105 4.105 25 C -0.135 4.135 26 C -0.141 4.141 27 C -0.140 4.140 28 C 0.514 3.486 29 O -0.575 6.575 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.412 0.588 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.364 0.636 45 H 0.253 0.747 46 H 0.061 0.939 47 H 0.037 0.963 48 H 0.049 0.951 49 H 0.047 0.953 50 H 0.065 0.935 51 H 0.059 0.941 52 H 0.054 0.946 53 H 0.111 0.889 54 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.685 11.972 -6.230 23.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 C -0.204 4.204 4 C 0.004 3.996 5 N -0.341 5.341 6 C -0.004 4.004 7 C -0.140 4.140 8 H 0.155 0.845 9 C 0.314 3.686 10 O -0.450 6.450 11 N -0.363 5.363 12 C -0.005 4.005 13 C 0.066 3.934 14 H 0.076 0.924 15 N -0.387 5.387 16 C -0.332 4.332 17 H 0.084 0.916 18 C -0.253 4.253 19 N -0.636 5.636 20 Si 0.771 3.229 21 H -0.201 1.201 22 H -0.238 1.238 23 H -0.183 1.183 24 C -0.127 4.127 25 C -0.192 4.192 26 C -0.199 4.199 27 C -0.180 4.180 28 C 0.303 3.697 29 O -0.455 6.455 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.249 0.751 42 H 0.104 0.896 43 H 0.080 0.920 44 H 0.197 0.803 45 H 0.062 0.938 46 H 0.079 0.921 47 H 0.057 0.943 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.084 0.916 51 H 0.078 0.922 52 H 0.073 0.927 53 H 0.129 0.871 54 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.066 12.156 -6.728 24.406 hybrid contribution 0.307 -0.632 1.207 1.397 sum -19.759 11.523 -5.520 23.530 Atomic orbital electron populations 1.21737 0.93028 1.02118 1.02939 1.21489 0.97206 0.96875 0.97570 1.21912 1.00847 0.95053 1.02580 1.21680 0.76970 1.01614 0.99287 1.48373 1.07066 1.21175 1.57495 1.22153 0.85864 0.90698 1.01719 1.22239 0.93542 0.95608 1.02584 0.84462 1.20287 0.83865 0.88169 0.76318 1.90684 1.84451 1.19078 1.50771 1.46025 1.05715 1.14742 1.69844 1.21680 0.85065 0.92137 1.01615 1.20676 0.91753 0.93313 0.87667 0.92424 1.42797 1.56998 1.31952 1.06991 1.18909 1.18665 1.00801 0.94869 0.91631 1.25324 1.01528 0.98270 1.00197 1.69865 1.45269 1.24013 1.24457 0.85614 0.78466 0.78947 0.79884 1.20080 1.23848 1.18254 1.21612 0.95678 0.97311 0.98060 1.21728 0.96609 0.99193 1.01687 1.21856 1.02138 1.00224 0.95699 1.22340 0.93662 1.01035 1.01008 1.21113 0.90443 0.81524 0.76659 1.90703 1.75214 1.33062 1.46519 0.90983 0.92033 0.92744 0.93492 0.93326 0.92511 0.91186 0.90962 0.87591 0.87525 0.89391 0.75120 0.89583 0.91959 0.80283 0.93821 0.92064 0.94339 0.93153 0.93400 0.91642 0.92225 0.92654 0.87100 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.19 71.98 0.66 -0.95 16 2 C -0.11 -1.71 3.13 -10.79 -0.03 -1.74 16 3 C -0.15 -2.04 8.87 71.98 0.64 -1.40 16 4 C 0.13 1.96 5.35 86.38 0.46 2.42 16 5 N -0.61 -11.39 2.71 -817.91 -2.21 -13.60 16 6 C 0.12 1.93 6.02 86.83 0.52 2.45 16 7 C -0.12 -2.09 3.54 -10.48 -0.04 -2.13 16 8 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 9 C 0.53 12.22 7.06 87.66 0.62 12.84 16 10 O -0.57 -16.21 15.53 -3.04 -0.05 -16.26 16 11 N -0.71 -17.32 5.38 -463.06 -2.49 -19.81 16 12 C 0.12 3.08 4.73 86.38 0.41 3.49 16 13 C 0.17 5.36 2.18 44.99 0.10 5.46 16 14 H 0.06 1.88 8.08 -2.39 -0.02 1.86 16 15 N -0.74 -28.83 4.24 -322.95 -1.37 -30.20 16 16 C -0.20 -9.92 8.05 84.03 0.68 -9.25 16 17 H 0.07 3.60 7.63 -2.91 -0.02 3.57 16 18 C -0.06 -3.34 5.50 84.86 0.47 -2.88 16 19 N -0.98 -59.52 13.97 21.65 0.30 -59.22 16 20 Si 0.94 42.10 27.74 68.60 1.90 44.01 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.31 -14.80 7.11 99.48 0.71 -14.10 16 23 H -0.26 -10.48 6.52 99.48 0.65 -9.83 16 24 C -0.11 -3.05 2.69 -10.79 -0.03 -3.08 16 25 C -0.13 -4.57 8.26 71.98 0.59 -3.98 16 26 C -0.14 -3.16 8.84 71.98 0.64 -2.53 16 27 C -0.14 -2.71 6.41 30.61 0.20 -2.51 16 28 C 0.51 12.45 8.02 87.92 0.71 13.15 16 29 O -0.57 -18.72 17.60 -3.03 -0.05 -18.77 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 0.81 5.44 -2.39 -0.01 0.80 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 1.30 7.93 -2.39 -0.02 1.28 16 38 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.09 1.64 5.05 -2.38 -0.01 1.63 16 41 H 0.41 10.18 8.14 -92.71 -0.75 9.43 16 42 H 0.09 2.03 6.71 -2.39 -0.02 2.01 16 43 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.36 13.98 5.66 -92.71 -0.52 13.45 16 45 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 46 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.05 2.01 6.01 -2.39 -0.01 2.00 16 50 H 0.06 1.30 6.55 -2.38 -0.02 1.28 16 51 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 53 H 0.11 2.12 7.89 -2.39 -0.02 2.10 16 54 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -68.66 419.40 2.17 -66.49 By element: Atomic # 1 Polarization: 38.45 SS G_CDS: -0.45 Total: 38.01 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 6.59 Total: 9.37 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -5.77 Total: -122.84 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.10 Total: -35.04 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.90 Total: 44.01 kcal Total: -68.66 2.17 -66.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715492520.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.459 kcal (2) G-P(sol) polarization free energy of solvation -68.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds