Wall clock time and date at job start Sat Apr 11 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36931 * 119.99882 * 2 1 4 4 H 1.07998 * 120.00103 * 187.96253 * 3 2 1 5 5 C 1.38814 * 119.99864 * 7.97339 * 3 2 1 6 6 N 1.31612 * 120.00400 * 30.50238 * 5 3 2 7 7 Si 1.86807 * 119.99610 * 210.50426 * 5 3 2 8 8 H 1.48501 * 109.46952 * 94.99635 * 7 5 3 9 9 H 1.48502 * 109.46981 * 214.99249 * 7 5 3 10 10 H 1.48495 * 109.47210 * 334.99913 * 7 5 3 11 11 C 1.46499 * 119.99688 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47270 * 269.99546 * 11 2 1 13 13 N 1.46494 * 109.47449 * 180.02562 * 12 11 2 14 14 C 1.46496 * 120.00023 * 270.00511 * 13 12 11 15 15 C 1.34774 * 119.99720 * 90.00062 * 13 12 11 16 16 O 1.21277 * 120.00597 * 354.55667 * 15 13 12 17 17 C 1.50701 * 119.99838 * 174.55374 * 15 13 12 18 18 H 1.09002 * 109.33364 * 329.25668 * 17 15 13 19 19 C 1.53075 * 109.40306 * 89.04316 * 17 15 13 20 20 C 1.53340 * 108.42697 * 169.02938 * 19 17 15 21 21 C 1.52923 * 108.80972 * 292.38682 * 20 19 17 22 22 N 1.46117 * 110.28842 * 50.70005 * 21 20 19 23 23 C 1.46493 * 117.88075 * 160.98781 * 22 21 20 24 24 C 1.53001 * 109.47381 * 237.48196 * 23 22 21 25 25 C 1.53007 * 109.47273 * 357.48208 * 23 22 21 26 26 C 1.52998 * 109.47516 * 117.48084 * 23 22 21 27 27 C 1.33356 * 124.17591 * 341.02912 * 22 21 20 28 28 O 1.21286 * 118.24878 * 182.15998 * 27 22 21 29 29 H 1.09001 * 109.47253 * 274.48431 * 1 2 3 30 30 H 1.08994 * 109.47520 * 34.48975 * 1 2 3 31 31 H 1.09000 * 109.46959 * 154.48508 * 1 2 3 32 32 H 0.97004 * 120.00091 * 180.02562 * 6 5 3 33 33 H 1.09008 * 109.47181 * 150.00232 * 11 2 1 34 34 H 1.08996 * 109.47665 * 29.99958 * 11 2 1 35 35 H 1.08998 * 109.46418 * 60.00391 * 12 11 2 36 36 H 1.09005 * 109.47089 * 300.00805 * 12 11 2 37 37 H 1.09004 * 109.47208 * 274.43475 * 14 13 12 38 38 H 1.09000 * 109.47438 * 34.44189 * 14 13 12 39 39 H 1.09006 * 109.47374 * 154.44169 * 14 13 12 40 40 H 1.08997 * 109.66720 * 49.29507 * 19 17 15 41 41 H 1.09000 * 109.69788 * 288.78157 * 19 17 15 42 42 H 1.09001 * 109.60403 * 52.22211 * 20 19 17 43 43 H 1.08998 * 109.60505 * 172.54920 * 20 19 17 44 44 H 1.09004 * 109.29939 * 171.14564 * 21 20 19 45 45 H 1.08996 * 109.30224 * 290.52607 * 21 20 19 46 46 H 1.09008 * 109.46754 * 64.45597 * 24 23 22 47 47 H 1.09004 * 109.47285 * 184.45377 * 24 23 22 48 48 H 1.08997 * 109.47036 * 304.46020 * 24 23 22 49 49 H 1.09001 * 109.46417 * 59.99460 * 25 23 22 50 50 H 1.08993 * 109.47596 * 179.97438 * 25 23 22 51 51 H 1.09001 * 109.46569 * 300.00463 * 25 23 22 52 52 H 1.09008 * 109.47174 * 60.00304 * 26 23 22 53 53 H 1.09007 * 109.47287 * 180.02562 * 26 23 22 54 54 H 1.08998 * 109.47161 * 300.00083 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2218 1.1904 -0.1296 5 6 1.4656 2.3822 0.1668 6 7 0.3645 2.4159 0.8868 7 14 2.1080 3.9444 -0.6310 8 1 1.4301 4.1484 -1.9364 9 1 1.8323 5.1028 0.2563 10 1 3.5722 3.8238 -0.8472 11 6 2.1975 -1.2688 -0.0006 12 6 2.4526 -1.7111 1.4418 13 7 3.1855 -2.9795 1.4412 14 6 2.4535 -4.2484 1.4405 15 6 4.5332 -2.9789 1.4413 16 8 5.1393 -1.9331 1.3423 17 6 5.2872 -4.2779 1.5647 18 1 4.7023 -4.9796 2.1593 19 6 5.5210 -4.8646 0.1703 20 6 6.5154 -6.0253 0.2933 21 6 7.8817 -5.4641 0.6893 22 7 7.7513 -4.5834 1.8479 23 6 8.9574 -4.2933 2.6271 24 6 8.7361 -4.7085 4.0830 25 6 10.1389 -5.0743 2.0481 26 6 9.2570 -2.7943 2.5642 27 6 6.6045 -4.0279 2.2412 28 8 6.6264 -3.2810 3.1965 29 1 -0.3634 0.0803 1.0245 30 1 -0.3634 0.8470 -0.5819 31 1 -0.3633 -0.9274 -0.4427 32 1 -0.1137 3.2518 1.0030 33 1 3.1500 -1.1382 -0.5143 34 1 1.6084 -2.0282 -0.5147 35 1 1.5001 -1.8416 1.9555 36 1 3.0416 -0.9516 1.9559 37 1 2.2029 -4.5240 2.4649 38 1 1.5379 -4.1395 0.8592 39 1 3.0751 -5.0263 0.9968 40 1 5.9315 -4.0976 -0.4863 41 1 4.5785 -5.2304 -0.2371 42 1 6.1712 -6.7225 1.0571 43 1 6.5954 -6.5413 -0.6635 44 1 8.5530 -6.2879 0.9320 45 1 8.2957 -4.9004 -0.1467 46 1 8.6012 -5.7889 4.1362 47 1 9.6025 -4.4208 4.6786 48 1 7.8470 -4.2118 4.4713 49 1 10.2964 -4.7785 1.0108 50 1 11.0363 -4.8581 2.6275 51 1 9.9253 -6.1422 2.0929 52 1 8.4153 -2.2379 2.9768 53 1 10.1547 -2.5786 3.1437 54 1 9.4147 -2.4985 1.5271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715932216.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:39 Heat of formation + Delta-G solvation = -56.318777 kcal Electronic energy + Delta-G solvation = -31826.954319 eV Core-core repulsion = 27799.268557 eV Total energy + Delta-G solvation = -4027.685762 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.33923 -40.63702 -38.01732 -37.70691 -36.93745 -36.41205 -33.65491 -32.71632 -31.13922 -30.03667 -28.60193 -28.26767 -27.95921 -27.52065 -25.94931 -25.03702 -23.68270 -22.47067 -21.65295 -20.24831 -19.25973 -18.85590 -18.23383 -17.95415 -17.27434 -17.18085 -16.70400 -16.31584 -16.05104 -15.63498 -15.51397 -15.30626 -15.16190 -14.76981 -14.63739 -14.48732 -14.36184 -14.23035 -13.95961 -13.88578 -13.33011 -13.30712 -13.23341 -13.05700 -13.03610 -12.86713 -12.79525 -12.78028 -12.57325 -12.44555 -12.38142 -12.15537 -12.11400 -12.03601 -11.98222 -11.85929 -11.75432 -11.66872 -10.80488 -10.59586 -10.41774 -9.79725 -9.61142 -8.94278 -7.98566 -5.22911 1.40592 1.40839 1.42300 1.52431 1.56480 1.95431 2.18191 2.49840 3.13049 3.29761 3.49914 3.70093 3.75188 3.77707 3.93435 3.97451 4.01563 4.10547 4.17649 4.20501 4.32261 4.41613 4.46394 4.56293 4.58861 4.64336 4.66830 4.73322 4.77297 4.78826 4.81164 4.82702 4.86061 4.93391 4.94636 4.99687 5.04934 5.08978 5.11919 5.21102 5.30259 5.30694 5.31374 5.39958 5.48027 5.58713 5.67235 5.72469 6.20363 6.39504 6.52161 7.06864 7.13638 7.25282 7.81990 8.19419 9.08708 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.002835 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.506679 B = 9873.152083 C =10810.174505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.170 3.830 2 N -0.616 5.616 3 C -0.271 4.271 4 H 0.056 0.944 5 C -0.044 4.044 6 N -0.922 5.922 7 Si 0.952 3.048 8 H -0.279 1.279 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.152 3.848 12 C 0.112 3.888 13 N -0.610 5.610 14 C 0.065 3.935 15 C 0.517 3.483 16 O -0.583 6.583 17 C -0.115 4.115 18 H 0.149 0.851 19 C -0.112 4.112 20 C -0.123 4.123 21 C 0.093 3.907 22 N -0.591 5.591 23 C 0.159 3.841 24 C -0.160 4.160 25 C -0.145 4.145 26 C -0.162 4.162 27 C 0.523 3.477 28 O -0.575 6.575 29 H 0.000 1.000 30 H 0.024 0.976 31 H 0.046 0.954 32 H 0.252 0.748 33 H 0.024 0.976 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.026 0.974 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.054 0.946 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.122 0.878 44 H 0.114 0.886 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.047 0.953 49 H 0.069 0.931 50 H 0.081 0.919 51 H 0.086 0.914 52 H 0.036 0.964 53 H 0.077 0.923 54 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.726 -29.680 -1.351 33.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.340 5.340 3 C -0.401 4.401 4 H 0.074 0.926 5 C -0.241 4.241 6 N -0.567 5.567 7 Si 0.780 3.220 8 H -0.205 1.205 9 H -0.219 1.219 10 H -0.205 1.205 11 C 0.025 3.975 12 C -0.014 4.014 13 N -0.343 5.343 14 C -0.076 4.076 15 C 0.305 3.695 16 O -0.461 6.461 17 C -0.139 4.139 18 H 0.166 0.834 19 C -0.149 4.149 20 C -0.160 4.160 21 C -0.028 4.028 22 N -0.323 5.323 23 C 0.075 3.925 24 C -0.218 4.218 25 C -0.202 4.202 26 C -0.220 4.220 27 C 0.311 3.689 28 O -0.455 6.455 29 H 0.018 0.982 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.123 0.877 40 H 0.073 0.927 41 H 0.130 0.870 42 H 0.111 0.889 43 H 0.140 0.860 44 H 0.132 0.868 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.066 0.934 49 H 0.088 0.912 50 H 0.099 0.901 51 H 0.104 0.896 52 H 0.056 0.944 53 H 0.095 0.905 54 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.917 -28.652 -0.911 32.315 hybrid contribution -0.020 2.059 0.218 2.071 sum 14.897 -26.593 -0.693 30.489 Atomic orbital electron populations 1.20673 0.81672 0.97338 0.97730 1.44336 1.02657 1.01408 1.85557 1.19352 0.91905 0.85056 1.43751 0.92570 1.25365 0.98574 1.00120 0.99997 1.70360 1.21637 1.26613 1.38131 0.85482 0.77933 0.79765 0.78847 1.20535 1.21869 1.20476 1.21098 0.95160 0.87135 0.94105 1.22017 0.95071 0.84248 1.00057 1.47995 1.05192 1.08414 1.72712 1.22250 0.98347 0.83522 1.03485 1.20673 0.82608 0.90638 0.75598 1.90746 1.68918 1.35899 1.50570 1.21484 0.94148 0.95999 1.02236 0.83381 1.21749 1.03228 0.98688 0.91276 1.21936 0.92127 0.96543 1.05416 1.21993 1.00015 0.94094 0.86649 1.47609 1.06877 1.48030 1.29828 1.20579 0.85248 0.94657 0.91995 1.22189 1.02832 1.01605 0.95198 1.22143 0.95720 1.00542 1.01804 1.22190 1.01713 0.96777 1.01325 1.19672 0.85903 0.79556 0.83798 1.90660 1.87054 1.37258 1.30518 0.98174 0.95717 0.93527 0.93897 0.95738 0.90617 0.90338 0.95520 0.91296 0.89392 0.87668 0.92699 0.87023 0.88890 0.85953 0.86822 0.91588 0.91194 0.90927 0.93358 0.91208 0.90060 0.89557 0.94446 0.90462 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.49 9.12 127.77 1.17 9.65 16 2 N -0.62 -32.96 2.93 -726.93 -2.13 -35.09 16 3 C -0.27 -16.49 9.65 84.03 0.81 -15.68 16 4 H 0.06 3.57 7.98 -2.91 -0.02 3.55 16 5 C -0.04 -2.67 4.76 84.86 0.40 -2.27 16 6 N -0.92 -56.92 11.04 21.65 0.24 -56.68 16 7 Si 0.95 48.45 29.65 68.60 2.03 50.48 16 8 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 9 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 10 H -0.28 -14.14 7.11 99.48 0.71 -13.44 16 11 C 0.15 6.67 6.03 86.38 0.52 7.19 16 12 C 0.11 4.64 5.71 86.38 0.49 5.14 16 13 N -0.61 -19.31 2.87 -846.76 -2.43 -21.74 16 14 C 0.06 1.13 9.87 127.77 1.26 2.39 16 15 C 0.52 18.42 6.38 87.66 0.56 18.98 16 16 O -0.58 -28.67 15.56 11.92 0.19 -28.48 16 17 C -0.11 -2.69 1.91 -12.42 -0.02 -2.71 16 18 H 0.15 2.48 6.84 -2.39 -0.02 2.46 16 19 C -0.11 -1.62 5.17 30.73 0.16 -1.46 16 20 C -0.12 -0.82 6.01 30.68 0.18 -0.64 16 21 C 0.09 0.98 5.26 86.43 0.45 1.44 16 22 N -0.59 -12.15 2.80 -778.66 -2.18 -14.33 16 23 C 0.16 3.15 1.03 3.61 0.00 3.15 16 24 C -0.16 -3.27 8.38 71.98 0.60 -2.66 16 25 C -0.14 -1.50 7.27 71.98 0.52 -0.98 16 26 C -0.16 -4.25 8.40 71.98 0.60 -3.65 16 27 C 0.52 15.14 6.05 87.71 0.53 15.67 16 28 O -0.57 -22.64 11.45 11.90 0.14 -22.50 16 29 H 0.00 0.00 7.77 -2.39 -0.02 -0.02 16 30 H 0.02 1.33 6.76 -2.39 -0.02 1.31 16 31 H 0.05 1.86 7.84 -2.39 -0.02 1.85 16 32 H 0.25 14.94 8.31 -92.70 -0.77 14.17 16 33 H 0.02 1.18 8.03 -2.38 -0.02 1.16 16 34 H 0.08 2.71 7.86 -2.39 -0.02 2.69 16 35 H 0.08 3.06 8.07 -2.39 -0.02 3.04 16 36 H 0.03 1.40 7.50 -2.38 -0.02 1.38 16 37 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.09 1.36 8.11 -2.39 -0.02 1.34 16 39 H 0.10 1.05 5.14 -2.38 -0.01 1.04 16 40 H 0.05 1.11 8.09 -2.39 -0.02 1.09 16 41 H 0.11 1.00 6.82 -2.39 -0.02 0.98 16 42 H 0.09 0.37 8.12 -2.39 -0.02 0.35 16 43 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.11 0.52 6.00 -2.38 -0.01 0.50 16 45 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 46 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 47 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 48 H 0.05 1.39 5.70 -2.39 -0.01 1.37 16 49 H 0.07 0.67 7.59 -2.39 -0.02 0.65 16 50 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.09 0.52 6.84 -2.39 -0.02 0.51 16 52 H 0.04 1.35 6.04 -2.38 -0.01 1.34 16 53 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 54 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -91.65 409.10 4.97 -86.68 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.86 Total: 8.10 kcal Atomic # 6 Polarization: 25.31 SS G_CDS: 8.26 Total: 33.57 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -6.50 Total: -127.84 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: 0.32 Total: -50.98 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.48 kcal Total: -91.65 4.97 -86.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715932216.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.363 kcal (2) G-P(sol) polarization free energy of solvation -91.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds