Wall clock time and date at job start Sat Apr 11 2020 05:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47099 * 2 1 4 4 C 1.53002 * 109.47150 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47289 * 305.00024 * 4 3 2 6 6 C 1.53004 * 109.47151 * 65.00217 * 4 3 2 7 7 C 1.53003 * 109.47037 * 185.00085 * 4 3 2 8 8 C 1.50700 * 109.47347 * 175.00171 * 7 4 3 9 9 O 1.21286 * 119.99547 * 359.97438 * 8 7 4 10 10 N 1.34768 * 120.00470 * 180.02562 * 8 7 4 11 11 C 1.47425 * 125.64649 * 354.62452 * 10 8 7 12 12 C 1.54695 * 104.94069 * 204.07569 * 11 10 8 13 13 C 1.55153 * 101.67585 * 323.27569 * 12 11 10 14 14 C 1.47019 * 125.65223 * 174.93234 * 10 8 7 15 15 H 1.09002 * 109.87906 * 59.48655 * 14 10 8 16 16 C 1.52999 * 109.88278 * 298.47827 * 14 10 8 17 17 N 1.46904 * 109.46826 * 175.62968 * 16 14 10 18 18 C 1.46900 * 110.99767 * 184.82268 * 17 16 14 19 19 C 1.50699 * 109.47288 * 179.97438 * 18 17 16 20 20 O 1.21292 * 120.00058 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00181 * 180.02562 * 19 18 17 22 22 C 1.37090 * 120.00268 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00196 * 359.97438 * 22 21 19 24 24 C 1.38954 * 120.00144 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00254 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99894 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47032 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47131 * 119.99663 * 26 24 22 29 29 H 1.48494 * 109.46851 * 239.99628 * 26 24 22 30 30 H 1.08997 * 109.47281 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47662 * 299.99865 * 1 2 3 32 32 H 1.09006 * 109.47646 * 59.99794 * 1 2 3 33 33 H 1.09004 * 109.46807 * 240.00219 * 2 1 3 34 34 H 1.08996 * 109.47645 * 120.00155 * 2 1 3 35 35 H 1.09002 * 109.47386 * 59.99952 * 3 2 1 36 36 H 1.09006 * 109.47285 * 300.00085 * 3 2 1 37 37 H 1.08995 * 109.47182 * 59.99742 * 6 4 3 38 38 H 1.09001 * 109.46564 * 179.97438 * 6 4 3 39 39 H 1.08995 * 109.46599 * 300.00045 * 6 4 3 40 40 H 1.09007 * 109.47287 * 294.99900 * 7 4 3 41 41 H 1.08998 * 109.47525 * 55.00062 * 7 4 3 42 42 H 1.09005 * 110.36738 * 323.00562 * 11 10 8 43 43 H 1.09005 * 110.36837 * 85.32821 * 11 10 8 44 44 H 1.09003 * 111.10147 * 205.10345 * 12 11 10 45 45 H 1.08997 * 110.85036 * 81.33983 * 12 11 10 46 46 H 1.08999 * 110.71938 * 276.97118 * 13 12 11 47 47 H 1.08998 * 110.71893 * 153.69962 * 13 12 11 48 48 H 1.08998 * 109.46990 * 295.62750 * 16 14 10 49 49 H 1.08995 * 109.47122 * 55.63023 * 16 14 10 50 50 H 1.00895 * 111.00403 * 308.77550 * 17 16 14 51 51 H 1.09003 * 109.47184 * 300.00435 * 18 17 16 52 52 H 1.09009 * 109.47154 * 60.00179 * 18 17 16 53 53 H 0.97007 * 120.00077 * 359.97438 * 21 19 18 54 54 H 0.96994 * 120.00136 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9336 0.8530 0.8409 6 6 4.0794 0.8331 -1.3084 7 6 4.0800 2.8795 0.1251 8 6 5.5819 2.8706 0.2479 9 8 6.1850 1.8184 0.2366 10 7 6.2549 4.0317 0.3715 11 6 5.6643 5.3800 0.2895 12 6 6.8341 6.3031 -0.1259 13 6 8.0219 5.6724 0.6477 14 6 7.7006 4.1636 0.6041 15 1 8.2515 3.6907 -0.2090 16 6 8.0752 3.5097 1.9356 17 7 9.5332 3.5540 2.1097 18 6 9.9406 2.8338 3.3235 19 6 11.4391 2.9002 3.4680 20 8 12.1026 3.4900 2.6415 21 7 12.0422 2.3043 4.5157 22 6 13.4054 2.3652 4.6475 23 1 13.9962 2.8903 3.9115 24 6 14.0271 1.7504 5.7274 25 7 13.3085 1.1110 6.6227 26 14 15.8848 1.8328 5.9065 27 1 16.4574 2.6050 4.7748 28 1 16.2295 2.5011 7.1871 29 1 16.4441 0.4572 5.8999 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8932 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.7157 1.4226 -2.1499 38 1 5.1694 0.8336 -1.3089 39 1 3.7160 -0.1906 -1.3979 40 1 3.7912 3.4464 -0.7601 41 1 3.6458 3.3430 1.0109 42 1 4.8761 5.4037 -0.4630 43 1 5.2721 5.6821 1.2606 44 1 6.6580 7.3292 0.1972 45 1 7.0006 6.2579 -1.2022 46 1 8.0464 6.0319 1.6764 47 1 8.9651 5.8806 0.1427 48 1 7.5952 4.0484 2.7526 49 1 7.7404 2.4725 1.9379 50 1 10.0058 3.1885 1.2967 51 1 9.4705 3.2928 4.1933 52 1 9.6289 1.7918 3.2496 53 1 11.5116 1.8330 5.1770 54 1 13.7425 0.6821 7.3767 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716773474.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:00 Heat of formation + Delta-G solvation = -119.246985 kcal Electronic energy + Delta-G solvation = -29584.552722 eV Core-core repulsion = 25554.138188 eV Total energy + Delta-G solvation = -4030.414534 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.37993 -40.19083 -39.04550 -37.41854 -36.64854 -35.81522 -33.65495 -33.30671 -32.62717 -31.37101 -28.84352 -28.19133 -27.45007 -26.39749 -24.88266 -23.68379 -22.74925 -21.81752 -21.23874 -20.84470 -20.02238 -19.69179 -18.14959 -17.96713 -17.23110 -17.00621 -16.63412 -16.54704 -16.07577 -15.95365 -15.64572 -15.31274 -15.14380 -14.94790 -14.78573 -14.66100 -14.29445 -14.06740 -14.03268 -13.63744 -13.52662 -13.34701 -13.22034 -13.12999 -12.95269 -12.87122 -12.65661 -12.52588 -12.42996 -12.36331 -12.12086 -12.05086 -11.83658 -11.81663 -11.66763 -11.57466 -11.53975 -11.46229 -11.27214 -10.67730 -10.40872 -10.04985 -9.65794 -9.44619 -8.49084 -5.98471 1.35413 1.40550 1.55455 1.64610 1.93190 2.00299 2.28073 2.91520 3.17448 3.41700 3.54606 3.69864 3.79294 3.83559 3.89929 3.96751 4.22055 4.22326 4.24470 4.29073 4.31490 4.38883 4.43073 4.46620 4.50433 4.55067 4.66195 4.68043 4.72872 4.74894 4.80967 4.87288 4.93385 4.97899 5.05193 5.05412 5.07551 5.17871 5.18435 5.25737 5.31079 5.36144 5.38804 5.43390 5.44455 5.55003 5.58340 5.78437 6.01937 6.23514 6.56122 6.58571 7.09073 7.21206 7.51571 8.06321 8.68727 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013941 B = 0.001923 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.052141 B =14554.590594 C =16077.708180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.106 4.106 4 C -0.076 4.076 5 H 0.051 0.949 6 C -0.150 4.150 7 C -0.122 4.122 8 C 0.516 3.484 9 O -0.580 6.580 10 N -0.616 5.616 11 C 0.096 3.904 12 C -0.127 4.127 13 C -0.112 4.112 14 C 0.140 3.860 15 H 0.052 0.948 16 C 0.061 3.939 17 N -0.666 5.666 18 C 0.066 3.934 19 C 0.440 3.560 20 O -0.620 6.620 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.081 0.919 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.997 3.003 27 H -0.272 1.272 28 H -0.269 1.269 29 H -0.271 1.271 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.041 0.959 39 H 0.054 0.946 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.019 0.981 50 H 0.341 0.659 51 H 0.106 0.894 52 H 0.054 0.946 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.897 7.079 -13.397 32.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.143 4.143 4 C -0.095 4.095 5 H 0.070 0.930 6 C -0.207 4.207 7 C -0.162 4.162 8 C 0.307 3.693 9 O -0.460 6.460 10 N -0.351 5.351 11 C -0.025 4.025 12 C -0.165 4.165 13 C -0.151 4.151 14 C 0.035 3.965 15 H 0.070 0.930 16 C -0.069 4.069 17 N -0.298 5.298 18 C -0.067 4.067 19 C 0.227 3.773 20 O -0.506 6.506 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.099 0.901 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.820 3.180 27 H -0.197 1.197 28 H -0.194 1.194 29 H -0.196 1.196 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.121 0.879 43 H 0.103 0.897 44 H 0.126 0.874 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.098 0.902 49 H 0.038 0.962 50 H 0.159 0.841 51 H 0.124 0.876 52 H 0.072 0.928 53 H 0.230 0.770 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -28.162 7.361 -13.479 32.078 hybrid contribution 1.042 -1.681 0.435 2.025 sum -27.121 5.680 -13.044 30.626 Atomic orbital electron populations 1.21757 0.95078 1.01747 1.02176 1.21589 0.96392 0.97144 1.01632 1.21610 0.92662 0.96999 1.03047 1.20887 0.95968 0.94325 0.98291 0.93036 1.21930 1.00953 1.00816 0.97022 1.21787 0.88612 0.99617 1.06144 1.21204 0.91434 0.81717 0.74918 1.90688 1.71500 1.32048 1.51797 1.48757 1.07992 1.07239 1.71069 1.22591 0.97103 0.79674 1.03162 1.22801 0.93014 0.99959 1.00681 1.22528 0.99508 0.90897 1.02129 1.21395 0.81949 0.98125 0.95007 0.93026 1.22231 0.87495 0.98820 0.98338 1.60114 1.05844 1.59034 1.04799 1.21516 0.91613 0.97763 0.95780 1.20706 0.90673 0.82833 0.83070 1.90481 1.67314 1.48131 1.44673 1.41933 1.07491 1.48340 1.23182 1.19743 0.83267 1.33897 1.09550 0.90142 1.26104 1.05115 0.95494 0.94675 1.69684 1.38055 1.35143 1.13321 0.84822 0.76526 0.78314 0.78353 1.19679 1.19399 1.19629 0.92912 0.92433 0.92154 0.92207 0.93078 0.90947 0.90554 0.91965 0.93973 0.92739 0.86483 0.86776 0.87875 0.89660 0.87407 0.90442 0.90298 0.90618 0.90209 0.96234 0.84105 0.87641 0.92780 0.77050 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.13 -1.57 5.69 30.59 0.17 -1.39 16 3 C -0.11 -1.11 4.68 30.59 0.14 -0.97 16 4 C -0.08 -1.18 2.04 -10.79 -0.02 -1.21 16 5 H 0.05 1.09 7.95 -2.39 -0.02 1.07 16 6 C -0.15 -2.73 8.69 71.98 0.63 -2.10 16 7 C -0.12 -1.57 4.27 29.85 0.13 -1.45 16 8 C 0.52 11.42 7.29 87.66 0.64 12.06 16 9 O -0.58 -18.52 13.14 -3.05 -0.04 -18.56 16 10 N -0.62 -11.81 3.07 -788.48 -2.42 -14.23 16 11 C 0.10 0.97 6.64 86.78 0.58 1.55 16 12 C -0.13 -1.38 7.07 31.91 0.23 -1.16 16 13 C -0.11 -2.14 6.28 31.78 0.20 -1.94 16 14 C 0.14 3.35 2.98 45.34 0.14 3.48 16 15 H 0.05 1.47 8.13 -2.39 -0.02 1.45 16 16 C 0.06 1.76 5.10 86.30 0.44 2.20 16 17 N -0.67 -23.28 5.95 -517.92 -3.08 -26.36 16 18 C 0.07 2.52 6.16 85.56 0.53 3.04 16 19 C 0.44 22.10 7.82 87.66 0.69 22.79 16 20 O -0.62 -35.58 15.78 -3.07 -0.05 -35.63 16 21 N -0.57 -30.72 5.29 -306.99 -1.62 -32.35 16 22 C -0.34 -19.63 9.68 84.04 0.81 -18.81 16 23 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 24 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 25 N -0.92 -51.01 13.05 21.66 0.28 -50.73 16 26 Si 1.00 43.85 29.55 68.60 2.03 45.87 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 28 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 29 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.06 0.77 6.56 -2.38 -0.02 0.76 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.04 1.06 5.95 -2.39 -0.01 1.04 16 39 H 0.05 0.95 6.56 -2.39 -0.02 0.94 16 40 H 0.12 0.91 7.76 -2.38 -0.02 0.89 16 41 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.10 0.51 7.51 -2.38 -0.02 0.50 16 43 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.08 1.58 7.79 -2.39 -0.02 1.57 16 47 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.08 2.12 8.05 -2.39 -0.02 2.10 16 49 H 0.02 0.65 6.88 -2.39 -0.02 0.63 16 50 H 0.34 12.83 8.36 -89.70 -0.75 12.09 16 51 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 52 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 53 H 0.40 20.28 7.90 -92.70 -0.73 19.55 16 54 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -74.93 425.80 0.97 -73.96 By element: Atomic # 1 Polarization: 43.58 SS G_CDS: -0.60 Total: 42.98 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 6.47 Total: 15.05 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -6.84 Total: -123.67 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -0.09 Total: -54.20 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -74.93 0.97 -73.96 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716773474.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.291 kcal (2) G-P(sol) polarization free energy of solvation -74.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds