Wall clock time and date at job start Sat Apr 11 2020 05:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47143 * 2 1 4 4 C 1.52991 * 109.47381 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.47262 * 305.00266 * 4 3 2 6 6 C 1.52999 * 109.47130 * 65.00080 * 4 3 2 7 7 C 1.53001 * 109.47246 * 185.68556 * 6 4 3 8 8 C 1.50703 * 109.47499 * 185.00293 * 4 3 2 9 9 O 1.21277 * 119.99849 * 265.48430 * 8 4 3 10 10 N 1.34770 * 119.99946 * 85.48077 * 8 4 3 11 11 C 1.47422 * 125.65119 * 2.94448 * 10 8 4 12 12 C 1.54686 * 104.94462 * 204.07529 * 11 10 8 13 13 C 1.55154 * 101.68043 * 323.27683 * 12 11 10 14 14 C 1.47019 * 125.64946 * 183.25507 * 10 8 4 15 15 H 1.09008 * 109.88640 * 59.33156 * 14 10 8 16 16 C 1.53002 * 109.88464 * 298.32105 * 14 10 8 17 17 N 1.46903 * 109.46913 * 54.99899 * 16 14 10 18 18 C 1.46893 * 111.00145 * 180.02562 * 17 16 14 19 19 C 1.50695 * 109.47263 * 179.97438 * 18 17 16 20 20 O 1.21291 * 120.00206 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00085 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00060 * 179.97438 * 21 19 18 23 23 H 1.07996 * 120.00249 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99808 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00013 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99617 * 180.02562 * 24 22 21 27 27 H 1.48491 * 109.47511 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47205 * 119.99977 * 26 24 22 29 29 H 1.48501 * 109.46979 * 239.99829 * 26 24 22 30 30 H 1.09004 * 109.47350 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47084 * 299.99374 * 1 2 3 32 32 H 1.08998 * 109.47726 * 59.99574 * 1 2 3 33 33 H 1.09004 * 109.47084 * 240.00626 * 2 1 3 34 34 H 1.08998 * 109.47726 * 120.00426 * 2 1 3 35 35 H 1.08998 * 109.47157 * 300.00775 * 3 2 1 36 36 H 1.09004 * 109.46619 * 60.00341 * 3 2 1 37 37 H 1.09000 * 109.47750 * 305.69155 * 6 4 3 38 38 H 1.09008 * 109.46997 * 65.68855 * 6 4 3 39 39 H 1.08997 * 109.47702 * 294.97592 * 7 6 4 40 40 H 1.08998 * 109.46829 * 54.97962 * 7 6 4 41 41 H 1.09004 * 109.47165 * 174.97405 * 7 6 4 42 42 H 1.09006 * 110.37018 * 323.00813 * 11 10 8 43 43 H 1.09002 * 110.36945 * 85.32714 * 11 10 8 44 44 H 1.09010 * 111.10111 * 205.10749 * 12 11 10 45 45 H 1.09000 * 110.81778 * 81.32717 * 12 11 10 46 46 H 1.09008 * 110.72039 * 276.97654 * 13 12 11 47 47 H 1.08991 * 110.72603 * 153.69758 * 13 12 11 48 48 H 1.08993 * 109.47284 * 174.99722 * 16 14 10 49 49 H 1.09002 * 109.47202 * 295.00127 * 16 14 10 50 50 H 1.00895 * 110.99777 * 56.04493 * 17 16 14 51 51 H 1.08997 * 109.46970 * 299.99870 * 18 17 16 52 52 H 1.09003 * 109.47336 * 59.99826 * 18 17 16 53 53 H 0.97001 * 119.99914 * 0.02562 * 21 19 18 54 54 H 0.97001 * 119.99518 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9336 0.8529 0.8409 6 6 4.0794 0.8332 -1.3083 7 6 5.6027 0.7027 -1.2507 8 6 4.0723 2.8579 0.1233 9 8 4.3520 3.4914 -0.8724 10 7 4.2108 3.4197 1.3404 11 6 3.9673 2.7476 2.6297 12 6 3.6531 3.8912 3.6227 13 6 4.6147 5.0059 3.1326 14 6 4.6235 4.8063 1.6023 15 1 3.9230 5.4967 1.1322 16 6 6.0326 5.0420 1.0549 17 7 6.0709 4.6841 -0.3693 18 6 7.4117 4.8975 -0.9300 19 6 7.4122 4.5198 -2.3888 20 8 6.3957 4.1124 -2.9102 21 7 8.5425 4.6337 -3.1141 22 6 8.5431 4.2895 -4.4411 23 1 7.6379 3.9268 -4.9053 24 6 9.7086 4.4065 -5.1887 25 7 10.8100 4.8474 -4.6237 26 14 9.7091 3.9383 -6.9971 27 1 8.3538 3.4750 -7.3889 28 1 10.0842 5.1201 -7.8143 29 1 10.6899 2.8470 -7.2255 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6765 1.9564 -0.8899 36 1 1.6766 1.9562 0.8901 37 1 3.6352 -0.1525 -1.4472 38 1 3.8012 1.4778 -2.1422 39 1 6.0509 1.6950 -1.2017 40 1 5.8853 0.1323 -0.3660 41 1 5.9573 0.1876 -2.1436 42 1 3.1173 2.0698 2.5497 43 1 4.8572 2.2051 2.9488 44 1 3.8854 3.5971 4.6464 45 1 2.6132 4.2058 3.5348 46 1 5.6132 4.8630 3.5458 47 1 4.2267 5.9911 3.3908 48 1 6.2970 6.0928 1.1726 49 1 6.7437 4.4247 1.6039 50 1 5.3751 5.1969 -0.8898 51 1 7.6862 5.9472 -0.8260 52 1 8.1321 4.2788 -0.3946 53 1 9.3558 4.9584 -2.6969 54 1 11.6237 4.9286 -5.1455 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716787070.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:15 Heat of formation + Delta-G solvation = -90.768630 kcal Electronic energy + Delta-G solvation = -31785.916829 eV Core-core repulsion = 27756.737210 eV Total energy + Delta-G solvation = -4029.179620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 4.49 seconds Orbital eigenvalues (eV) -41.22881 -39.98963 -38.73017 -36.92378 -36.33694 -35.62444 -33.78561 -33.21159 -32.44551 -31.23652 -29.84978 -28.22033 -26.31565 -25.62428 -24.58406 -23.87553 -22.65271 -22.06045 -21.20865 -20.88383 -19.88069 -19.36364 -18.26187 -17.71326 -17.34313 -16.76361 -16.33602 -16.05962 -15.94824 -15.79981 -15.57306 -15.08987 -14.88809 -14.71889 -14.63440 -14.38660 -14.06771 -13.97462 -13.87087 -13.76290 -13.49558 -13.37355 -13.04486 -13.02571 -12.82984 -12.68892 -12.53554 -12.43438 -12.39838 -12.19772 -12.14437 -11.97398 -11.88159 -11.82650 -11.59971 -11.58501 -11.52771 -11.46934 -11.22140 -10.19650 -10.06438 -9.95797 -9.42223 -8.74290 -8.44969 -5.92498 1.34715 1.37875 1.53235 2.13065 2.15375 2.28981 2.32102 3.03966 3.22095 3.58318 3.65288 3.79555 3.85200 3.96205 4.01157 4.07946 4.25690 4.31094 4.32630 4.36162 4.39881 4.44622 4.52190 4.55824 4.58155 4.62983 4.63801 4.70466 4.73016 4.78104 4.87296 4.89972 4.94364 5.00684 5.03359 5.11352 5.15886 5.17833 5.20904 5.31898 5.37358 5.41309 5.43212 5.46898 5.50893 5.54253 5.72627 5.96673 6.25742 6.62970 6.65656 6.94798 7.17267 7.61688 7.80254 8.20509 8.73578 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.003214 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.614609 B = 8709.545577 C =10583.416627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.098 4.098 4 C -0.089 4.089 5 H 0.102 0.898 6 C -0.096 4.096 7 C -0.143 4.143 8 C 0.510 3.490 9 O -0.505 6.505 10 N -0.618 5.618 11 C 0.093 3.907 12 C -0.121 4.121 13 C -0.117 4.117 14 C 0.138 3.862 15 H 0.052 0.948 16 C 0.047 3.953 17 N -0.641 5.641 18 C 0.060 3.940 19 C 0.441 3.559 20 O -0.596 6.596 21 N -0.583 5.583 22 C -0.325 4.325 23 H 0.073 0.927 24 C -0.017 4.017 25 N -0.925 5.925 26 Si 0.992 3.008 27 H -0.276 1.276 28 H -0.269 1.269 29 H -0.269 1.269 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.036 0.964 39 H 0.032 0.968 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.039 0.961 49 H 0.070 0.930 50 H 0.344 0.656 51 H 0.050 0.950 52 H 0.087 0.913 53 H 0.392 0.608 54 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.191 -5.895 22.705 28.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.136 4.136 4 C -0.111 4.111 5 H 0.120 0.880 6 C -0.134 4.134 7 C -0.201 4.201 8 C 0.297 3.703 9 O -0.377 6.377 10 N -0.355 5.355 11 C -0.029 4.029 12 C -0.159 4.159 13 C -0.155 4.155 14 C 0.034 3.966 15 H 0.070 0.930 16 C -0.083 4.083 17 N -0.278 5.278 18 C -0.073 4.073 19 C 0.228 3.772 20 O -0.479 6.479 21 N -0.222 5.222 22 C -0.455 4.455 23 H 0.091 0.909 24 C -0.216 4.216 25 N -0.567 5.567 26 Si 0.816 3.184 27 H -0.201 1.201 28 H -0.195 1.195 29 H -0.194 1.194 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.105 0.895 43 H 0.085 0.915 44 H 0.125 0.875 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.112 0.888 48 H 0.057 0.943 49 H 0.088 0.912 50 H 0.166 0.834 51 H 0.068 0.932 52 H 0.106 0.894 53 H 0.226 0.774 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.471 -6.497 21.733 28.033 hybrid contribution 1.088 1.224 -1.274 2.074 sum -15.384 -5.274 20.459 26.135 Atomic orbital electron populations 1.21761 0.95195 1.02114 1.01770 1.21565 0.96283 0.95124 1.02809 1.21457 0.91537 0.98585 1.02015 1.21298 0.97439 0.92679 0.99647 0.88017 1.21313 0.95165 1.00524 0.96403 1.21656 0.96914 1.00850 1.00665 1.20605 0.78108 0.89300 0.82260 1.90846 1.46062 1.63956 1.36825 1.48489 1.68993 1.12280 1.05720 1.22460 1.01424 0.96447 0.82607 1.22719 0.99855 0.93845 0.99467 1.22637 1.01581 1.00868 0.90417 1.21614 0.93558 0.84282 0.97195 0.92990 1.22576 0.97980 0.98522 0.89212 1.60792 1.02160 1.62762 1.02060 1.21554 0.94601 0.99399 0.91722 1.20859 0.83693 0.83011 0.89642 1.90565 1.33651 1.50405 1.73317 1.41955 1.10990 1.59545 1.09738 1.19634 0.97318 1.42018 0.86522 0.90853 1.26014 0.94134 0.97048 1.04378 1.69691 1.01194 1.47141 1.38706 0.84891 0.78131 0.78313 0.77105 1.20074 1.19452 1.19444 0.91838 0.92040 0.93661 0.92148 0.90299 0.93671 0.90578 0.89505 0.94496 0.94875 0.91688 0.94500 0.89517 0.91475 0.87539 0.90334 0.89629 0.88776 0.94331 0.91161 0.83373 0.93243 0.89442 0.77442 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.27 16 2 C -0.12 -1.80 5.70 30.59 0.17 -1.63 16 3 C -0.10 -1.91 4.58 30.59 0.14 -1.77 16 4 C -0.09 -2.16 1.48 -11.54 -0.02 -2.17 16 5 H 0.10 1.97 7.30 -2.38 -0.02 1.95 16 6 C -0.10 -2.89 4.97 30.59 0.15 -2.74 16 7 C -0.14 -4.99 9.63 71.98 0.69 -4.29 16 8 C 0.51 15.54 5.88 87.66 0.52 16.06 16 9 O -0.51 -21.01 10.80 -3.01 -0.03 -21.04 16 10 N -0.62 -14.22 3.07 -788.48 -2.42 -16.64 16 11 C 0.09 1.27 6.33 86.78 0.55 1.82 16 12 C -0.12 -1.09 7.07 31.91 0.23 -0.86 16 13 C -0.12 -1.42 6.48 31.78 0.21 -1.22 16 14 C 0.14 3.00 3.32 45.34 0.15 3.15 16 15 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 16 C 0.05 1.25 5.30 86.30 0.46 1.71 16 17 N -0.64 -24.01 2.86 -517.95 -1.48 -25.49 16 18 C 0.06 2.42 6.17 85.56 0.53 2.95 16 19 C 0.44 23.45 7.82 87.66 0.69 24.13 16 20 O -0.60 -36.43 15.36 -3.06 -0.05 -36.47 16 21 N -0.58 -32.78 5.29 -306.99 -1.62 -34.40 16 22 C -0.33 -19.88 9.68 84.04 0.81 -19.07 16 23 H 0.07 4.82 7.16 -2.91 -0.02 4.80 16 24 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 25 N -0.93 -52.98 13.05 21.66 0.28 -52.70 16 26 Si 0.99 45.80 29.55 68.60 2.03 47.82 16 27 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 29 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 30 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 1.00 6.45 -2.39 -0.02 0.99 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.08 1.25 7.43 -2.39 -0.02 1.23 16 37 H 0.09 2.08 6.32 -2.39 -0.02 2.07 16 38 H 0.04 1.40 7.66 -2.38 -0.02 1.38 16 39 H 0.03 1.45 7.08 -2.39 -0.02 1.43 16 40 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.09 0.94 6.72 -2.38 -0.02 0.93 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 45 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.09 0.95 7.77 -2.38 -0.02 0.93 16 47 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.07 1.80 8.02 -2.39 -0.02 1.78 16 50 H 0.34 14.72 6.96 -89.70 -0.62 14.10 16 51 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 52 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 53 H 0.39 21.07 7.90 -92.71 -0.73 20.34 16 54 H 0.28 14.70 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -78.65 418.32 2.69 -75.96 By element: Atomic # 1 Polarization: 49.13 SS G_CDS: -0.47 Total: 48.66 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 6.45 Total: 14.29 kcal Atomic # 7 Polarization: -123.98 SS G_CDS: -5.24 Total: -129.22 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: -0.08 Total: -57.51 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -78.65 2.69 -75.96 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716787070.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.805 kcal (2) G-P(sol) polarization free energy of solvation -78.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.49 seconds